Wall clock time and date at job start Mon Mar 30 2020 06:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.45879 * 2 1 4 4 C 1.54485 * 110.50960 * 237.39840 * 2 1 3 5 5 O 1.44426 * 104.80249 * 265.19405 * 4 2 1 6 6 C 1.44428 * 105.27491 * 319.49035 * 5 4 2 7 7 C 1.54475 * 104.80522 * 40.50979 * 6 5 4 8 8 H 1.09005 * 110.50912 * 94.66456 * 7 6 5 9 9 N 1.46896 * 110.51336 * 217.37416 * 7 6 5 10 10 C 1.46900 * 111.00211 * 269.64466 * 9 7 6 11 11 H 1.09006 * 109.46816 * 324.99661 * 10 9 7 12 12 C 1.50700 * 109.47049 * 85.00055 * 10 9 7 13 13 H 1.07998 * 120.00205 * 34.77161 * 12 10 9 14 14 C 1.37886 * 119.99636 * 214.77653 * 12 10 9 15 15 N 1.31510 * 119.99683 * 1.51106 * 14 12 10 16 16 Si 1.86799 * 119.99691 * 181.51546 * 14 12 10 17 17 H 1.48497 * 109.47144 * 89.99894 * 16 14 12 18 18 H 1.48502 * 109.46695 * 210.00070 * 16 14 12 19 19 H 1.48495 * 109.47263 * 329.99395 * 16 14 12 20 20 C 1.50695 * 109.46926 * 204.99932 * 10 9 7 21 21 C 1.38234 * 120.00410 * 313.77733 * 20 10 9 22 22 C 1.38236 * 120.00477 * 179.76755 * 21 20 10 23 23 C 1.38240 * 119.99612 * 0.49064 * 22 21 20 24 24 C 1.38226 * 119.99960 * 359.78430 * 23 22 21 25 25 C 1.38237 * 120.00080 * 134.05498 * 20 10 9 26 26 H 1.08995 * 109.46907 * 179.29501 * 1 2 3 27 27 H 1.09000 * 109.46616 * 299.29685 * 1 2 3 28 28 H 1.08995 * 109.46766 * 59.29536 * 1 2 3 29 29 H 1.08997 * 110.37297 * 24.02956 * 4 2 1 30 30 H 1.09002 * 110.36837 * 146.36594 * 4 2 1 31 31 H 1.08998 * 110.37067 * 159.34271 * 6 5 4 32 32 H 1.09001 * 110.36837 * 281.56758 * 6 5 4 33 33 H 1.00900 * 111.00132 * 33.59702 * 9 7 6 34 34 H 0.97002 * 119.99611 * 179.97438 * 15 14 12 35 35 H 1.08000 * 119.99834 * 0.02562 * 21 20 10 36 36 H 1.08000 * 120.00419 * 180.25633 * 22 21 20 37 37 H 1.07998 * 119.99500 * 179.77080 * 23 22 21 38 38 H 1.08006 * 120.00114 * 179.97438 * 24 23 22 39 39 H 1.07999 * 120.00147 * 0.02562 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0713 -0.7796 -1.2189 5 8 2.3101 -2.1159 -0.7259 6 6 2.8802 -1.9399 0.5894 7 6 2.0745 -0.7809 1.2170 8 1 1.2535 -1.1691 1.8200 9 7 2.9505 0.0751 2.0279 10 6 2.9980 -0.3895 3.4207 11 1 2.0233 -0.7863 3.7048 12 6 4.0391 -1.4709 3.5543 13 1 4.9425 -1.4267 2.9641 14 6 3.8381 -2.5169 4.4300 15 7 2.7249 -2.5865 5.1266 16 14 5.1472 -3.8348 4.6268 17 1 6.0893 -3.4397 5.7045 18 1 4.5019 -5.1243 4.9815 19 1 5.8911 -3.9881 3.3507 20 6 3.3532 0.7639 4.3231 21 6 4.3957 1.6078 3.9885 22 6 4.7184 2.6688 4.8138 23 6 4.0052 2.8798 5.9790 24 6 2.9665 2.0326 6.3165 25 6 2.6403 0.9748 5.4885 26 1 -0.3633 -1.0275 -0.0126 27 1 -0.3632 0.5029 0.8963 28 1 -0.3633 0.5247 -0.8836 29 1 1.3302 -0.7967 -2.0180 30 1 3.0011 -0.3336 -1.5721 31 1 2.7604 -2.8485 1.1795 32 1 3.9345 -1.6739 0.5135 33 1 3.8770 0.1234 1.6311 34 1 2.5834 -3.3225 5.7424 35 1 4.9553 1.4408 3.0800 36 1 5.5302 3.3305 4.5502 37 1 4.2598 3.7065 6.6257 38 1 2.4094 2.1972 7.2271 39 1 1.8290 0.3126 5.7525 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699761076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:31 Heat of formation + Delta-G solvation = -28.722019 kcal Electronic energy + Delta-G solvation = -19997.445702 eV Core-core repulsion = 17097.264072 eV Total energy + Delta-G solvation = -2900.181630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.27193 -38.25224 -35.19760 -33.01700 -31.92778 -30.32414 -29.96349 -27.41571 -26.19449 -25.45854 -22.81620 -21.94317 -21.38690 -19.90198 -19.64964 -16.82991 -16.19672 -15.76562 -15.49222 -14.82008 -14.57947 -14.19800 -14.02235 -13.43930 -13.38130 -12.90894 -12.52726 -12.45431 -12.14105 -11.98458 -11.79984 -11.57908 -11.30445 -11.05279 -10.88195 -10.81218 -10.43484 -10.32768 -10.26682 -10.10086 -9.88383 -9.55923 -9.24642 -8.66556 -8.01923 -7.75950 -7.37295 -6.19024 -4.30007 2.31935 2.37751 3.20008 3.27482 3.29566 4.27080 4.43090 4.75000 5.02909 5.13473 5.20488 5.24772 5.55811 5.67726 5.69987 5.74217 5.77097 5.84343 5.87147 6.01344 6.08824 6.19462 6.32591 6.39207 6.43945 6.44855 6.55483 6.61126 6.68476 6.86907 7.01281 7.15510 7.26137 7.33555 7.45191 7.64428 7.70854 7.94078 8.01283 8.08679 8.48369 8.82535 9.37189 10.83128 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.008608 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.508960 B = 3251.971935 C = 4643.610766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 H 0.088 0.912 4 C 0.047 3.953 5 O -0.387 6.387 6 C 0.030 3.970 7 C 0.080 3.920 8 H 0.086 0.914 9 N -0.677 5.677 10 C 0.228 3.772 11 H 0.075 0.925 12 C -0.539 4.539 13 H 0.057 0.943 14 C 0.076 3.924 15 N -0.879 5.879 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.010 4.010 21 C -0.112 4.112 22 C -0.133 4.133 23 C -0.155 4.155 24 C -0.129 4.129 25 C -0.114 4.114 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.328 0.672 34 H 0.265 0.735 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 6.095 -5.502 8.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 H 0.107 0.893 4 C -0.030 4.030 5 O -0.305 6.305 6 C -0.048 4.048 7 C -0.031 4.031 8 H 0.104 0.896 9 N -0.306 5.306 10 C 0.120 3.880 11 H 0.093 0.907 12 C -0.578 4.578 13 H 0.075 0.925 14 C -0.129 4.129 15 N -0.516 5.516 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.011 4.011 21 C -0.130 4.130 22 C -0.151 4.151 23 C -0.174 4.174 24 C -0.147 4.147 25 C -0.133 4.133 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.010 6.238 -5.350 8.460 hybrid contribution 1.528 -1.415 0.469 2.134 sum -0.483 4.823 -4.880 6.879 Atomic orbital electron populations 1.21736 0.94687 1.01636 1.01295 1.22583 0.96235 1.00642 0.94836 0.89320 1.23438 0.99226 0.83751 0.96580 1.89062 1.83304 1.25714 1.32438 1.24226 0.96704 1.01285 0.82565 1.22747 0.96358 0.90453 0.93580 0.89572 1.60941 1.14645 1.50983 1.04036 1.18477 0.99076 0.88071 0.82350 0.90743 1.21597 1.05309 1.06316 1.24569 0.92456 1.24946 0.95193 0.97662 0.95115 1.69872 1.24163 1.31967 1.25559 0.86652 0.81972 0.81110 0.78735 1.20482 1.21052 1.19753 1.20446 0.92319 0.93300 0.95036 1.20808 0.97923 0.95130 0.99189 1.20945 0.99867 0.98636 0.95625 1.20781 0.98233 1.00437 0.97908 1.20971 0.98144 0.96346 0.99267 1.21050 1.00514 0.96760 0.94964 0.92682 0.92316 0.93237 0.90006 0.93053 0.88743 0.92514 0.85489 0.92495 0.87359 0.87756 0.87855 0.87660 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.95 37.16 0.33 -1.52 16 2 C -0.12 -1.86 3.50 -89.05 -0.31 -2.17 16 3 H 0.09 1.32 7.97 -51.93 -0.41 0.90 16 4 C 0.05 0.68 7.18 37.94 0.27 0.96 16 5 O -0.39 -6.93 11.65 -35.23 -0.41 -7.34 16 6 C 0.03 0.56 6.55 37.93 0.25 0.81 16 7 C 0.08 1.46 3.07 -66.15 -0.20 1.26 16 8 H 0.09 1.74 7.04 -51.93 -0.37 1.38 16 9 N -0.68 -13.15 5.62 -100.54 -0.57 -13.71 16 10 C 0.23 5.16 2.30 -70.02 -0.16 5.00 16 11 H 0.07 1.91 6.38 -51.93 -0.33 1.57 16 12 C -0.54 -13.28 7.48 -34.44 -0.26 -13.53 16 13 H 0.06 1.42 7.75 -52.49 -0.41 1.01 16 14 C 0.08 1.95 5.46 -17.82 -0.10 1.85 16 15 N -0.88 -23.43 12.78 55.43 0.71 -22.72 16 16 Si 0.89 20.40 29.54 -169.99 -5.02 15.37 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.01 -0.21 4.93 -104.63 -0.52 -0.73 16 21 C -0.11 -2.25 9.27 -39.58 -0.37 -2.61 16 22 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 23 C -0.16 -2.74 10.05 -39.58 -0.40 -3.14 16 24 C -0.13 -2.43 10.05 -39.59 -0.40 -2.83 16 25 C -0.11 -2.46 9.67 -39.58 -0.38 -2.84 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.03 7.87 -51.93 -0.41 0.62 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 32 H 0.06 1.05 7.55 -51.93 -0.39 0.66 16 33 H 0.33 6.21 7.24 -39.29 -0.28 5.93 16 34 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.11 2.06 7.47 -52.49 -0.39 1.67 16 36 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.12 2.61 8.00 -52.49 -0.42 2.19 16 LS Contribution 319.89 15.07 4.82 4.82 Total: -1.00 -26.23 319.89 -9.04 -35.26 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.93 Total: 10.59 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -2.64 Total: -22.28 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.14 Total: -36.43 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.41 Total: -7.34 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.23 -9.04 -35.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699761076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.542 kcal (2) G-P(sol) polarization free energy of solvation -26.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds