Wall clock time and date at job start Mon Mar 30 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.56444 * 2 1 4 4 C 1.54479 * 110.51273 * 237.31674 * 2 1 3 5 5 O 1.44426 * 104.80305 * 265.33423 * 4 2 1 6 6 C 1.44649 * 105.36843 * 319.56521 * 5 4 2 7 7 C 1.54476 * 104.69407 * 40.34641 * 6 5 4 8 8 H 1.09003 * 110.51210 * 94.90215 * 7 6 5 9 9 N 1.46901 * 110.51043 * 217.47528 * 7 6 5 10 10 C 1.46905 * 110.99957 * 271.69568 * 9 7 6 11 11 H 1.09000 * 109.46707 * 35.00035 * 10 9 7 12 12 C 1.50703 * 109.46910 * 274.99968 * 10 9 7 13 13 H 1.07994 * 120.00316 * 333.95771 * 12 10 9 14 14 C 1.37884 * 119.99727 * 153.68249 * 12 10 9 15 15 N 1.31517 * 120.00014 * 354.78894 * 14 12 10 16 16 Si 1.86793 * 120.00027 * 174.78657 * 14 12 10 17 17 H 1.48500 * 109.47197 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46989 * 119.99634 * 16 14 12 19 19 H 1.48491 * 109.47291 * 240.00032 * 16 14 12 20 20 C 1.50699 * 109.47270 * 154.99797 * 10 9 7 21 21 C 1.38239 * 119.99757 * 45.96402 * 20 10 9 22 22 C 1.38232 * 119.99841 * 179.76693 * 21 20 10 23 23 C 1.38238 * 120.00124 * 0.48175 * 22 21 20 24 24 C 1.38234 * 119.99730 * 359.79387 * 23 22 21 25 25 C 1.38229 * 120.00088 * 359.95273 * 24 23 22 26 26 H 1.08998 * 109.47293 * 297.32524 * 1 2 3 27 27 H 1.09000 * 109.47089 * 57.32143 * 1 2 3 28 28 H 1.09000 * 109.47319 * 177.32372 * 1 2 3 29 29 H 1.08995 * 110.36938 * 24.17035 * 4 2 1 30 30 H 1.09002 * 110.37065 * 146.50436 * 4 2 1 31 31 H 1.08997 * 110.33932 * 281.59167 * 6 5 4 32 32 H 1.09000 * 110.50756 * 159.18697 * 6 5 4 33 33 H 1.00898 * 111.00036 * 147.74306 * 9 7 6 34 34 H 0.96999 * 120.00068 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.00260 * 359.97438 * 21 20 10 36 36 H 1.08004 * 120.00384 * 180.24964 * 22 21 20 37 37 H 1.08000 * 120.00157 * 179.76440 * 23 22 21 38 38 H 1.08007 * 119.99848 * 179.97438 * 24 23 22 39 39 H 1.08005 * 120.00086 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0713 -0.7813 -1.2178 5 8 2.3070 -2.1178 -0.7236 6 6 2.8750 -1.9442 0.5953 7 6 2.0714 -0.7813 1.2181 8 1 1.2490 -1.1654 1.8216 9 7 2.9481 0.0736 2.0296 10 6 3.0285 -0.4166 3.4121 11 1 2.9902 -1.5059 3.4141 12 6 1.8697 0.1283 4.2066 13 1 1.4020 1.0562 3.9123 14 6 1.4029 -0.5606 5.3059 15 7 1.8998 -1.7419 5.6014 16 14 0.0647 0.1838 6.3757 17 1 -0.3221 1.5108 5.8328 18 1 -1.1196 -0.7121 6.3820 19 1 0.5715 0.3443 7.7622 20 6 4.3230 0.0416 4.0331 21 6 4.7343 1.3530 3.8853 22 6 5.9192 1.7745 4.4589 23 6 6.6979 0.8821 5.1719 24 6 6.2893 -0.4307 5.3148 25 6 5.1018 -0.8509 4.7456 26 1 -0.3634 0.4717 0.9130 27 1 -0.3633 0.5549 -0.8650 28 1 -0.3634 -1.0265 -0.0480 29 1 1.3311 -0.7974 -2.0177 30 1 3.0024 -0.3373 -1.5701 31 1 3.9299 -1.6799 0.5217 32 1 2.7506 -2.8512 1.1870 33 1 2.6409 1.0344 2.0040 34 1 1.5711 -2.2268 6.3745 35 1 4.1282 2.0492 3.3245 36 1 6.2387 2.8002 4.3469 37 1 7.6255 1.2105 5.6169 38 1 6.8979 -1.1280 5.8716 39 1 4.7824 -1.8765 4.8577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699761078.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:33 Heat of formation + Delta-G solvation = -28.720189 kcal Electronic energy + Delta-G solvation = -19964.537508 eV Core-core repulsion = 17064.355957 eV Total energy + Delta-G solvation = -2900.181550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.26510 -38.23537 -35.23406 -33.06842 -31.90376 -30.20720 -29.93823 -27.64543 -26.21106 -25.46441 -23.09838 -21.69482 -21.29436 -19.85963 -19.70125 -16.73950 -16.09168 -15.81054 -15.53495 -14.73228 -14.65011 -14.33974 -14.05515 -13.80698 -13.18434 -12.97766 -12.62413 -12.48548 -12.13245 -11.98579 -11.77181 -11.53227 -11.30145 -11.08515 -11.00473 -10.65809 -10.52718 -10.33952 -10.24780 -10.04853 -9.88647 -9.53249 -9.32479 -8.62764 -7.98621 -7.73357 -7.39125 -6.17957 -4.28394 2.35330 2.40818 3.18917 3.28134 3.30292 4.28245 4.36942 4.77100 4.94106 5.07965 5.14524 5.23750 5.35028 5.70031 5.74170 5.77028 5.79075 5.87210 5.90122 5.93898 6.05921 6.14367 6.29790 6.37681 6.39957 6.46644 6.47219 6.64496 6.70443 6.85589 7.02853 7.08197 7.24738 7.36486 7.47357 7.66761 7.73048 7.95915 8.03679 8.08575 8.47231 8.82993 9.38828 10.84530 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.008334 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.459152 B = 3358.967761 C = 4630.356443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 H 0.083 0.917 4 C 0.054 3.946 5 O -0.385 6.385 6 C 0.054 3.946 7 C 0.070 3.930 8 H 0.069 0.931 9 N -0.679 5.679 10 C 0.231 3.769 11 H 0.068 0.932 12 C -0.541 4.541 13 H 0.058 0.942 14 C 0.075 3.925 15 N -0.877 5.877 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C -0.009 4.009 21 C -0.111 4.111 22 C -0.134 4.134 23 C -0.155 4.155 24 C -0.130 4.130 25 C -0.110 4.110 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.330 0.670 34 H 0.264 0.736 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 3.125 -7.149 8.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 H 0.102 0.898 4 C -0.023 4.023 5 O -0.303 6.303 6 C -0.023 4.023 7 C -0.041 4.041 8 H 0.087 0.913 9 N -0.309 5.309 10 C 0.123 3.877 11 H 0.086 0.914 12 C -0.579 4.579 13 H 0.076 0.924 14 C -0.130 4.130 15 N -0.514 5.514 16 Si 0.716 3.284 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.010 4.010 21 C -0.130 4.130 22 C -0.152 4.152 23 C -0.173 4.173 24 C -0.149 4.149 25 C -0.129 4.129 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.148 0.852 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.798 2.430 -7.334 8.218 hybrid contribution -1.540 0.921 1.463 2.315 sum 1.258 3.352 -5.872 6.877 Atomic orbital electron populations 1.21792 0.94474 1.01975 1.01518 1.22668 0.96376 1.00203 0.95483 0.89845 1.23350 0.99360 0.83458 0.96142 1.89079 1.83604 1.25802 1.31846 1.23564 0.97510 0.98756 0.82457 1.22727 0.94604 0.93522 0.93270 0.91346 1.60938 1.51343 1.05077 1.13576 1.18397 0.88999 0.97458 0.82812 0.91404 1.21627 1.14717 1.08391 1.13208 0.92402 1.24946 0.96307 0.94384 0.97356 1.69894 1.42510 1.11786 1.27170 0.86594 0.81617 0.79461 0.80733 1.19721 1.20936 1.20786 1.20409 0.94148 0.92527 0.93937 1.20797 0.95851 0.96205 1.00117 1.20933 0.96114 0.98437 0.99717 1.20779 0.99934 0.94213 1.02408 1.20972 0.97325 0.95714 1.00839 1.21049 0.93563 1.00172 0.98096 0.92138 0.93124 0.92394 0.89948 0.92678 0.91551 0.89616 0.85243 0.92598 0.87381 0.87793 0.87895 0.87698 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.94 37.16 0.33 -1.60 16 2 C -0.13 -1.90 3.39 -89.05 -0.30 -2.21 16 3 H 0.08 1.18 7.58 -51.93 -0.39 0.78 16 4 C 0.05 0.76 7.19 37.93 0.27 1.04 16 5 O -0.38 -6.61 11.65 -35.23 -0.41 -7.02 16 6 C 0.05 0.96 7.29 37.93 0.28 1.24 16 7 C 0.07 1.27 2.84 -66.15 -0.19 1.08 16 8 H 0.07 1.44 7.30 -51.93 -0.38 1.06 16 9 N -0.68 -13.21 5.63 -100.53 -0.57 -13.78 16 10 C 0.23 5.29 2.07 -70.01 -0.14 5.15 16 11 H 0.07 1.74 6.95 -51.93 -0.36 1.38 16 12 C -0.54 -13.59 8.03 -34.44 -0.28 -13.87 16 13 H 0.06 1.46 7.70 -52.49 -0.40 1.05 16 14 C 0.07 1.95 5.45 -17.82 -0.10 1.86 16 15 N -0.88 -23.62 12.90 55.43 0.72 -22.90 16 16 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.01 -0.20 4.93 -104.62 -0.52 -0.72 16 21 C -0.11 -2.26 9.27 -39.58 -0.37 -2.63 16 22 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 23 C -0.16 -2.78 10.05 -39.58 -0.40 -3.18 16 24 C -0.13 -2.49 10.05 -39.59 -0.40 -2.89 16 25 C -0.11 -2.40 9.67 -39.59 -0.38 -2.78 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.00 7.87 -51.93 -0.41 0.59 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.18 8.06 -51.93 -0.42 0.77 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.33 6.23 7.23 -39.29 -0.28 5.95 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.11 2.08 7.46 -52.49 -0.39 1.68 16 36 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 37 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 39 H 0.12 2.66 7.99 -52.48 -0.42 2.25 16 LS Contribution 321.59 15.07 4.85 4.85 Total: -1.00 -26.75 321.59 -9.00 -35.75 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.98 Total: 9.94 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -2.59 Total: -22.36 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.15 Total: -36.68 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.41 Total: -7.02 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.75 -9.00 -35.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699761078.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.026 kcal (2) G-P(sol) polarization free energy of solvation -26.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds