Wall clock time and date at job start Mon Mar 30 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.56444 * 2 1 4 4 C 1.54479 * 110.51273 * 237.31674 * 2 1 3 5 5 O 1.44426 * 104.80305 * 265.33423 * 4 2 1 6 6 C 1.44649 * 105.36843 * 319.56521 * 5 4 2 7 7 C 1.54476 * 104.69407 * 40.34641 * 6 5 4 8 8 H 1.09003 * 110.51210 * 94.90215 * 7 6 5 9 9 N 1.46901 * 110.51043 * 217.47528 * 7 6 5 10 10 C 1.46905 * 110.99957 * 271.69568 * 9 7 6 11 11 H 1.09000 * 109.46707 * 35.00035 * 10 9 7 12 12 C 1.50703 * 109.46910 * 274.99968 * 10 9 7 13 13 H 1.07994 * 120.00316 * 333.95771 * 12 10 9 14 14 C 1.37884 * 119.99727 * 153.68249 * 12 10 9 15 15 N 1.31517 * 120.00014 * 354.78894 * 14 12 10 16 16 Si 1.86793 * 120.00027 * 174.78657 * 14 12 10 17 17 H 1.48500 * 109.47197 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46989 * 119.99634 * 16 14 12 19 19 H 1.48491 * 109.47291 * 240.00032 * 16 14 12 20 20 C 1.50699 * 109.47270 * 154.99797 * 10 9 7 21 21 C 1.38239 * 119.99757 * 45.96402 * 20 10 9 22 22 C 1.38232 * 119.99841 * 179.76693 * 21 20 10 23 23 C 1.38238 * 120.00124 * 0.48175 * 22 21 20 24 24 C 1.38234 * 119.99730 * 359.79387 * 23 22 21 25 25 C 1.38229 * 120.00088 * 359.95273 * 24 23 22 26 26 H 1.08998 * 109.47293 * 297.32524 * 1 2 3 27 27 H 1.09000 * 109.47089 * 57.32143 * 1 2 3 28 28 H 1.09000 * 109.47319 * 177.32372 * 1 2 3 29 29 H 1.08995 * 110.36938 * 24.17035 * 4 2 1 30 30 H 1.09002 * 110.37065 * 146.50436 * 4 2 1 31 31 H 1.08997 * 110.33932 * 281.59167 * 6 5 4 32 32 H 1.09000 * 110.50756 * 159.18697 * 6 5 4 33 33 H 1.00898 * 111.00036 * 147.74306 * 9 7 6 34 34 H 0.96999 * 120.00068 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.00260 * 359.97438 * 21 20 10 36 36 H 1.08004 * 120.00384 * 180.24964 * 22 21 20 37 37 H 1.08000 * 120.00157 * 179.76440 * 23 22 21 38 38 H 1.08007 * 119.99848 * 179.97438 * 24 23 22 39 39 H 1.08005 * 120.00086 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0713 -0.7813 -1.2178 5 8 2.3070 -2.1178 -0.7236 6 6 2.8750 -1.9442 0.5953 7 6 2.0714 -0.7813 1.2181 8 1 1.2490 -1.1654 1.8216 9 7 2.9481 0.0736 2.0296 10 6 3.0285 -0.4166 3.4121 11 1 2.9902 -1.5059 3.4141 12 6 1.8697 0.1283 4.2066 13 1 1.4020 1.0562 3.9123 14 6 1.4029 -0.5606 5.3059 15 7 1.8998 -1.7419 5.6014 16 14 0.0647 0.1838 6.3757 17 1 -0.3221 1.5108 5.8328 18 1 -1.1196 -0.7121 6.3820 19 1 0.5715 0.3443 7.7622 20 6 4.3230 0.0416 4.0331 21 6 4.7343 1.3530 3.8853 22 6 5.9192 1.7745 4.4589 23 6 6.6979 0.8821 5.1719 24 6 6.2893 -0.4307 5.3148 25 6 5.1018 -0.8509 4.7456 26 1 -0.3634 0.4717 0.9130 27 1 -0.3633 0.5549 -0.8650 28 1 -0.3634 -1.0265 -0.0480 29 1 1.3311 -0.7974 -2.0177 30 1 3.0024 -0.3373 -1.5701 31 1 3.9299 -1.6799 0.5217 32 1 2.7506 -2.8512 1.1870 33 1 2.6409 1.0344 2.0040 34 1 1.5711 -2.2268 6.3745 35 1 4.1282 2.0492 3.3245 36 1 6.2387 2.8002 4.3469 37 1 7.6255 1.2105 5.6169 38 1 6.8979 -1.1280 5.8716 39 1 4.7824 -1.8765 4.8577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699761078.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:33 Heat of formation + Delta-G solvation = -44.079365 kcal Electronic energy + Delta-G solvation = -19965.203532 eV Core-core repulsion = 17064.355957 eV Total energy + Delta-G solvation = -2900.847574 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.66105 -39.76232 -36.85224 -34.66723 -33.53352 -31.71374 -31.46627 -29.19367 -27.71907 -26.94956 -24.79522 -23.20800 -22.69697 -21.42243 -21.15826 -18.66688 -17.57599 -17.22541 -16.91320 -16.58747 -16.00683 -15.84617 -15.56363 -15.36875 -14.82774 -14.30189 -14.16183 -13.97627 -13.53807 -13.33074 -13.27580 -13.18636 -13.00422 -12.89866 -12.51554 -12.27233 -11.90734 -11.87138 -11.70797 -11.57697 -11.50404 -11.26090 -10.66157 -10.60758 -9.52710 -9.31872 -9.09030 -8.13186 -6.31013 0.80083 0.86672 1.33387 1.37157 1.45446 2.35638 3.03824 3.08994 3.28399 3.59897 3.65182 4.00608 4.10058 4.29828 4.34753 4.36566 4.44700 4.50962 4.58729 4.75535 4.76384 4.89218 4.89936 4.93481 4.99954 5.06921 5.11322 5.15845 5.16931 5.35222 5.46103 5.49870 5.63389 5.82500 5.84474 5.93087 6.00589 6.21669 6.32134 6.47842 6.81469 6.92097 7.38299 8.85873 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.008334 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.459152 B = 3358.967761 C = 4630.356443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 H 0.097 0.903 4 C 0.053 3.947 5 O -0.397 6.397 6 C 0.061 3.939 7 C 0.068 3.932 8 H 0.032 0.968 9 N -0.667 5.667 10 C 0.242 3.758 11 H 0.028 0.972 12 C -0.543 4.543 13 H 0.055 0.945 14 C 0.027 3.973 15 N -0.906 5.906 16 Si 0.943 3.057 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.036 4.036 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.137 4.137 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.335 0.665 34 H 0.262 0.738 35 H 0.115 0.885 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.128 0.872 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 5.441 -7.909 10.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.140 4.140 3 H 0.115 0.885 4 C -0.024 4.024 5 O -0.316 6.316 6 C -0.016 4.016 7 C -0.043 4.043 8 H 0.050 0.950 9 N -0.298 5.298 10 C 0.134 3.866 11 H 0.046 0.954 12 C -0.582 4.582 13 H 0.073 0.927 14 C -0.174 4.174 15 N -0.544 5.544 16 Si 0.769 3.231 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.211 1.211 20 C -0.037 4.037 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.166 4.166 24 C -0.151 4.151 25 C -0.156 4.156 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.066 0.934 29 H 0.128 0.872 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.153 0.847 34 H 0.071 0.929 35 H 0.133 0.867 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.146 0.854 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.640 4.759 -8.113 10.085 hybrid contribution -1.738 0.210 1.652 2.407 sum 1.902 4.969 -6.461 8.370 Atomic orbital electron populations 1.21764 0.93585 1.01760 1.02250 1.22655 0.97079 1.00411 0.93877 0.88464 1.23584 1.00863 0.81770 0.96161 1.89065 1.83563 1.27855 1.31111 1.23362 0.97361 0.97928 0.82960 1.22704 0.93436 0.94152 0.94040 0.95022 1.60903 1.51608 1.05358 1.11885 1.18074 0.89312 0.95026 0.84213 0.95364 1.21880 1.15292 1.07890 1.13111 0.92658 1.25614 0.98310 0.94798 0.98690 1.70023 1.43914 1.12886 1.27605 0.85742 0.79413 0.78949 0.79000 1.18971 1.20867 1.21053 1.20384 0.94310 0.93873 0.95113 1.20948 0.97090 0.95294 1.00800 1.21353 0.94862 1.00264 0.98219 1.21234 1.00975 0.93220 1.01193 1.21259 0.96341 0.97191 1.00308 1.21026 0.95396 0.99270 0.99897 0.93566 0.89927 0.93364 0.87206 0.91253 0.91646 0.91202 0.84730 0.92908 0.86668 0.84170 0.83994 0.85392 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.94 71.98 0.64 -2.94 16 2 C -0.12 -3.45 3.39 -9.78 -0.03 -3.48 16 3 H 0.10 2.53 7.58 -2.38 -0.02 2.51 16 4 C 0.05 1.37 7.19 72.48 0.52 1.89 16 5 O -0.40 -13.45 11.65 -148.98 -1.74 -15.19 16 6 C 0.06 2.25 7.29 72.48 0.53 2.78 16 7 C 0.07 2.53 2.84 45.93 0.13 2.67 16 8 H 0.03 1.42 7.30 -2.39 -0.02 1.40 16 9 N -0.67 -26.53 5.63 -471.97 -2.66 -29.19 16 10 C 0.24 11.58 2.07 43.42 0.09 11.67 16 11 H 0.03 1.56 6.95 -2.39 -0.02 1.55 16 12 C -0.54 -28.07 8.03 25.60 0.21 -27.87 16 13 H 0.06 2.82 7.70 -2.91 -0.02 2.80 16 14 C 0.03 1.47 5.45 84.66 0.46 1.93 16 15 N -0.91 -51.06 12.90 21.45 0.28 -50.78 16 16 Si 0.94 42.89 29.54 68.60 2.03 44.91 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 C -0.04 -1.62 4.93 -19.87 -0.10 -1.71 16 21 C -0.12 -4.85 9.27 22.27 0.21 -4.65 16 22 C -0.13 -4.31 10.05 22.27 0.22 -4.09 16 23 C -0.15 -4.81 10.05 22.27 0.22 -4.59 16 24 C -0.13 -4.92 10.05 22.27 0.22 -4.70 16 25 C -0.14 -6.15 9.67 22.27 0.22 -5.93 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.11 2.30 7.87 -2.39 -0.02 2.28 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 2.40 8.06 -2.39 -0.02 2.38 16 32 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.33 12.62 7.23 -89.70 -0.65 11.97 16 34 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 35 H 0.12 4.27 7.46 -2.91 -0.02 4.25 16 36 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 37 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 39 H 0.09 4.49 7.99 -2.91 -0.02 4.47 16 Total: -1.00 -59.57 321.59 1.83 -57.74 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.38 Total: 31.52 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 3.54 Total: -39.01 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.38 Total: -79.97 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -1.74 Total: -15.19 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -59.57 1.83 -57.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699761078.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.664 kcal (2) G-P(sol) polarization free energy of solvation -59.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds