Wall clock time and date at job start Mon Mar 30 2020 06:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.53002 * 109.47049 * 179.97438 * 13 12 2 15 15 H 1.08994 * 109.67717 * 59.47718 * 14 13 12 16 16 C 1.53401 * 109.67986 * 180.02562 * 14 13 12 17 17 C 1.53075 * 108.29635 * 184.42951 * 16 14 13 18 18 C 1.50768 * 109.68041 * 311.79078 * 17 16 14 19 19 C 1.38510 * 118.76242 * 197.82717 * 18 17 16 20 20 C 1.38106 * 120.31381 * 180.15976 * 19 18 17 21 21 C 1.38287 * 119.98509 * 0.02562 * 20 19 18 22 22 C 1.37973 * 119.95980 * 359.91919 * 21 20 19 23 23 C 1.38372 * 121.40683 * 17.84413 * 18 17 16 24 24 O 1.35842 * 121.80013 * 359.48345 * 23 18 17 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 1.00897 * 110.99997 * 151.04377 * 12 2 1 30 30 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 31 31 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 32 32 H 1.09001 * 109.70286 * 304.12620 * 16 14 13 33 33 H 1.08998 * 109.70395 * 64.69087 * 16 14 13 34 34 H 1.09004 * 109.43839 * 71.85636 * 17 16 14 35 35 H 1.09001 * 109.43882 * 191.72301 * 17 16 14 36 36 H 1.07999 * 119.84159 * 0.17859 * 19 18 17 37 37 H 1.07993 * 120.00707 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.02713 * 179.90065 * 21 20 19 39 39 H 1.07993 * 119.89579 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5951 -0.5332 3.5745 15 1 3.5867 -0.9367 3.3695 16 6 2.6620 0.4181 4.7761 17 6 3.2814 -0.3383 5.9540 18 6 2.6065 -1.6776 6.1086 19 6 2.7402 -2.3567 7.3084 20 6 2.1382 -3.5872 7.4837 21 6 1.3983 -4.1471 6.4583 22 6 1.2608 -3.4748 5.2613 23 6 1.8639 -2.2337 5.0820 24 8 1.6984 -1.5983 3.8928 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.9173 -1.1206 1.0287 30 1 2.7589 1.0461 2.1182 31 1 1.0871 0.6164 2.5525 32 1 3.2801 1.2809 4.5278 33 1 1.6574 0.7493 5.0389 34 1 4.3455 -0.4874 5.7701 35 1 3.1497 0.2419 6.8673 36 1 3.3176 -1.9216 8.1107 37 1 2.2460 -4.1126 8.4211 38 1 0.9287 -5.1101 6.5941 39 1 0.6831 -3.9131 4.4610 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700367973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:55 Heat of formation + Delta-G solvation = -23.806830 kcal Electronic energy + Delta-G solvation = -19276.221039 eV Core-core repulsion = 16376.252548 eV Total energy + Delta-G solvation = -2899.968491 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.55602 -37.64611 -35.74947 -34.28160 -32.71759 -30.84891 -30.11787 -28.53547 -26.12831 -25.09702 -23.65967 -22.44556 -22.03721 -19.95579 -19.58852 -17.75565 -16.72402 -16.37078 -15.46557 -14.92569 -14.80229 -14.47445 -14.18638 -14.04660 -13.51856 -13.30909 -13.09754 -13.01078 -12.56861 -12.32557 -11.76669 -11.62214 -11.44184 -11.27172 -11.02635 -10.85149 -10.74743 -10.43313 -10.35638 -10.26119 -10.09653 -9.75690 -8.81824 -8.78185 -8.46111 -8.01505 -7.23614 -6.01523 -4.07934 1.32816 1.49384 3.32048 3.36372 3.39494 3.45321 3.79723 4.40004 4.58309 4.68270 4.75740 4.87180 5.07250 5.12879 5.28325 5.29614 5.40840 5.49625 5.55250 5.59224 5.65111 5.75088 5.93228 5.98762 6.05431 6.13922 6.34933 6.36944 6.50224 6.53533 6.85363 6.91188 7.17566 7.25994 7.51151 7.73565 7.79732 7.91390 8.29329 8.39724 8.67861 9.02336 9.57899 11.04818 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033506 B = 0.004028 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.461523 B = 6949.454198 C = 7311.693140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.681 5.681 13 C 0.067 3.933 14 C 0.097 3.903 15 H 0.067 0.933 16 C -0.155 4.155 17 C -0.075 4.075 18 C -0.170 4.170 19 C -0.087 4.087 20 C -0.164 4.164 21 C -0.090 4.090 22 C -0.151 4.151 23 C 0.142 3.858 24 O -0.286 6.286 25 H 0.080 0.920 26 H 0.003 0.997 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.329 0.671 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 -3.533 18.689 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.312 5.312 13 C -0.063 4.063 14 C 0.040 3.960 15 H 0.085 0.915 16 C -0.193 4.193 17 C -0.112 4.112 18 C -0.171 4.171 19 C -0.105 4.105 20 C -0.182 4.182 21 C -0.108 4.108 22 C -0.169 4.169 23 C 0.096 3.904 24 O -0.199 6.199 25 H 0.098 0.902 26 H 0.022 0.978 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.040 -3.671 18.530 19.133 hybrid contribution 1.208 0.206 -0.927 1.537 sum 4.248 -3.465 17.603 18.437 Atomic orbital electron populations 1.21700 0.97798 0.99442 0.99216 1.19114 0.92750 0.92168 0.85529 0.98249 1.21227 1.31511 1.12505 0.90456 0.92256 1.24917 0.95044 0.94995 0.99029 1.69893 1.36616 1.22881 1.23552 0.86576 0.79032 0.79831 0.82048 1.20159 1.21307 1.20356 1.60675 1.32045 1.32762 1.05699 1.21972 1.00894 0.93554 0.89870 1.22634 0.92553 0.86211 0.94563 0.91483 1.22264 1.02795 0.98989 0.95297 1.20452 0.99272 0.92407 0.99050 1.19862 1.04194 0.98245 0.94768 1.20839 0.98776 0.94844 0.96035 1.20930 1.01120 0.96704 0.99462 1.20906 0.97957 0.99351 0.92546 1.20688 1.03982 0.93200 0.99065 1.18905 0.94668 0.91452 0.85367 1.86241 1.54008 1.47297 1.32363 0.90182 0.97757 0.94890 0.92883 0.85352 0.94159 0.90773 0.89770 0.90385 0.90701 0.90336 0.86301 0.86323 0.85751 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.19 37.16 0.34 -2.81 16 2 C 0.21 5.44 2.60 -68.86 -0.18 5.26 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.38 8.59 -34.44 -0.30 -14.67 16 5 H 0.06 1.62 7.62 -52.48 -0.40 1.22 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.68 -14.87 6.19 -107.95 -0.67 -15.53 16 13 C 0.07 1.21 5.19 -3.82 -0.02 1.19 16 14 C 0.10 1.48 3.00 -26.52 -0.08 1.40 16 15 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.16 -1.87 5.49 -26.48 -0.15 -2.01 16 17 C -0.07 -0.81 5.86 -27.81 -0.16 -0.97 16 18 C -0.17 -2.19 5.75 -104.44 -0.60 -2.80 16 19 C -0.09 -0.97 9.67 -39.53 -0.38 -1.35 16 20 C -0.16 -1.75 10.04 -39.61 -0.40 -2.15 16 21 C -0.09 -1.02 10.04 -39.66 -0.40 -1.42 16 22 C -0.15 -2.10 9.94 -39.34 -0.39 -2.49 16 23 C 0.14 2.16 6.47 -39.20 -0.25 1.91 16 24 O -0.29 -4.96 9.81 -19.24 -0.19 -5.15 16 25 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 26 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 29 H 0.33 7.00 8.22 -39.29 -0.32 6.67 16 30 H 0.04 0.69 8.05 -51.93 -0.42 0.27 16 31 H 0.07 1.39 7.44 -51.93 -0.39 1.01 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -29.98 317.37 -9.52 -39.50 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.00 Total: 4.30 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -3.06 Total: -19.29 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.04 Total: -40.53 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.19 Total: -5.15 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.98 -9.52 -39.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700367973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.694 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds