Wall clock time and date at job start Mon Mar 30 2020 06:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.53002 * 109.47049 * 179.97438 * 13 12 2 15 15 H 1.08994 * 109.67717 * 59.47718 * 14 13 12 16 16 C 1.53401 * 109.67986 * 180.02562 * 14 13 12 17 17 C 1.53075 * 108.29635 * 184.42951 * 16 14 13 18 18 C 1.50768 * 109.68041 * 311.79078 * 17 16 14 19 19 C 1.38510 * 118.76242 * 197.82717 * 18 17 16 20 20 C 1.38106 * 120.31381 * 180.15976 * 19 18 17 21 21 C 1.38287 * 119.98509 * 0.02562 * 20 19 18 22 22 C 1.37973 * 119.95980 * 359.91919 * 21 20 19 23 23 C 1.38372 * 121.40683 * 17.84413 * 18 17 16 24 24 O 1.35842 * 121.80013 * 359.48345 * 23 18 17 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 1.00897 * 110.99997 * 151.04377 * 12 2 1 30 30 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 31 31 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 32 32 H 1.09001 * 109.70286 * 304.12620 * 16 14 13 33 33 H 1.08998 * 109.70395 * 64.69087 * 16 14 13 34 34 H 1.09004 * 109.43839 * 71.85636 * 17 16 14 35 35 H 1.09001 * 109.43882 * 191.72301 * 17 16 14 36 36 H 1.07999 * 119.84159 * 0.17859 * 19 18 17 37 37 H 1.07993 * 120.00707 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.02713 * 179.90065 * 21 20 19 39 39 H 1.07993 * 119.89579 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5951 -0.5332 3.5745 15 1 3.5867 -0.9367 3.3695 16 6 2.6620 0.4181 4.7761 17 6 3.2814 -0.3383 5.9540 18 6 2.6065 -1.6776 6.1086 19 6 2.7402 -2.3567 7.3084 20 6 2.1382 -3.5872 7.4837 21 6 1.3983 -4.1471 6.4583 22 6 1.2608 -3.4748 5.2613 23 6 1.8639 -2.2337 5.0820 24 8 1.6984 -1.5983 3.8928 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.9173 -1.1206 1.0287 30 1 2.7589 1.0461 2.1182 31 1 1.0871 0.6164 2.5525 32 1 3.2801 1.2809 4.5278 33 1 1.6574 0.7493 5.0389 34 1 4.3455 -0.4874 5.7701 35 1 3.1497 0.2419 6.8673 36 1 3.3176 -1.9216 8.1107 37 1 2.2460 -4.1126 8.4211 38 1 0.9287 -5.1101 6.5941 39 1 0.6831 -3.9131 4.4610 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700367973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:55 Heat of formation + Delta-G solvation = -41.700463 kcal Electronic energy + Delta-G solvation = -19276.996965 eV Core-core repulsion = 16376.252548 eV Total energy + Delta-G solvation = -2900.744417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58993 -38.75121 -37.47893 -35.36259 -34.52075 -32.27198 -31.05618 -30.12331 -27.66399 -27.04580 -24.69689 -23.51635 -23.25567 -21.74441 -20.78602 -18.85366 -18.54488 -17.54189 -16.85484 -16.57075 -15.96204 -15.81251 -15.42890 -15.17553 -14.86652 -14.69560 -14.57704 -14.07151 -13.97530 -13.49044 -13.36067 -13.02490 -12.89309 -12.71378 -12.49963 -12.36866 -12.25244 -12.19996 -12.07463 -11.75188 -11.51217 -11.18843 -10.89474 -10.58137 -9.68183 -9.04995 -9.01055 -8.14340 -6.28724 0.42093 0.54585 1.41783 1.44253 1.51828 2.36247 2.40980 2.86364 3.13952 3.40447 3.73284 3.80552 3.88453 3.97888 4.19660 4.25914 4.35535 4.41430 4.48189 4.59858 4.68047 4.72154 4.78163 4.90275 4.92435 5.05917 5.06225 5.12070 5.19634 5.21193 5.42946 5.45906 5.58436 5.64041 5.64934 5.82944 5.98148 6.19963 6.44640 6.64860 6.77393 6.98032 7.41604 8.91368 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033506 B = 0.004028 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.461523 B = 6949.454198 C = 7311.693140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.216 3.784 3 H -0.025 1.025 4 C -0.540 4.540 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.685 5.685 13 C 0.069 3.931 14 C 0.100 3.900 15 H 0.069 0.931 16 C -0.149 4.149 17 C -0.071 4.071 18 C -0.178 4.178 19 C -0.088 4.088 20 C -0.159 4.159 21 C -0.091 4.091 22 C -0.176 4.176 23 C 0.106 3.894 24 O -0.320 6.320 25 H 0.059 0.941 26 H 0.018 0.982 27 H 0.022 0.978 28 H 0.263 0.737 29 H 0.332 0.668 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.253 -4.100 20.667 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 H -0.008 1.008 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.194 1.194 12 N -0.316 5.316 13 C -0.061 4.061 14 C 0.044 3.956 15 H 0.087 0.913 16 C -0.187 4.187 17 C -0.108 4.108 18 C -0.179 4.179 19 C -0.106 4.106 20 C -0.177 4.177 21 C -0.109 4.109 22 C -0.194 4.194 23 C 0.061 3.939 24 O -0.235 6.235 25 H 0.077 0.923 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.166 0.834 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.406 -4.243 20.536 21.428 hybrid contribution 0.760 0.344 -1.441 1.665 sum 5.166 -3.898 19.095 20.162 Atomic orbital electron populations 1.21532 0.98023 0.98563 0.98871 1.18920 0.92573 0.90923 0.86812 1.00787 1.21548 1.31889 1.12743 0.91652 0.92392 1.25740 0.95107 0.95664 1.02040 1.70016 1.37352 1.24016 1.24302 0.85526 0.78813 0.78553 0.78211 1.19859 1.20756 1.19383 1.60561 1.32292 1.33433 1.05291 1.21998 1.00690 0.93664 0.89701 1.22541 0.91928 0.86592 0.94582 0.91305 1.22227 1.03066 0.98963 0.94404 1.20519 0.99529 0.91436 0.99328 1.20173 1.03719 0.99259 0.94752 1.21246 0.98481 0.94860 0.95977 1.21374 0.99538 0.96560 1.00204 1.21223 0.97849 1.00090 0.91728 1.20845 1.04820 0.93641 1.00119 1.19226 0.96888 0.92303 0.85481 1.86161 1.55013 1.48235 1.34050 0.92262 0.96267 0.95843 0.92755 0.85119 0.93139 0.91989 0.87740 0.91138 0.89385 0.87819 0.83216 0.83127 0.83388 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.88 9.19 71.98 0.66 -5.22 16 2 C 0.22 11.42 2.60 44.17 0.11 11.53 16 3 H -0.03 -1.44 7.80 -2.39 -0.02 -1.46 16 4 C -0.54 -30.47 8.59 25.60 0.22 -30.25 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 8 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 N -0.68 -30.70 6.19 -495.43 -3.07 -33.77 16 13 C 0.07 2.52 5.19 86.30 0.45 2.97 16 14 C 0.10 3.05 3.00 30.73 0.09 3.14 16 15 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 16 C -0.15 -3.36 5.49 30.75 0.17 -3.19 16 17 C -0.07 -1.35 5.86 29.89 0.18 -1.18 16 18 C -0.18 -4.28 5.75 -19.75 -0.11 -4.40 16 19 C -0.09 -1.67 9.67 22.30 0.22 -1.45 16 20 C -0.16 -2.87 10.04 22.25 0.22 -2.65 16 21 C -0.09 -1.93 10.04 22.22 0.22 -1.71 16 22 C -0.18 -4.96 9.94 22.43 0.22 -4.73 16 23 C 0.11 3.24 6.47 22.52 0.15 3.39 16 24 O -0.32 -11.43 9.81 -91.77 -0.90 -12.33 16 25 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 26 H 0.02 0.90 7.45 -2.39 -0.02 0.88 16 27 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.33 14.44 8.22 -89.70 -0.74 13.70 16 30 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 31 H 0.06 2.39 7.44 -2.38 -0.02 2.37 16 32 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 39 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -65.79 317.37 1.84 -63.95 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.29 Total: 21.95 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 3.25 Total: -32.53 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -2.83 Total: -87.13 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.90 Total: -12.33 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -65.79 1.84 -63.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700367973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.254 kcal (2) G-P(sol) polarization free energy of solvation -65.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds