Wall clock time and date at job start Mon Mar 30 2020 06:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46932 * 2 1 4 4 C 1.50698 * 109.47062 * 239.99977 * 2 1 3 5 5 H 1.07996 * 120.00221 * 245.35300 * 4 2 1 6 6 C 1.37876 * 119.99902 * 65.35066 * 4 2 1 7 7 N 1.31518 * 120.00343 * 5.14586 * 6 4 2 8 8 Si 1.86807 * 120.00265 * 185.14411 * 6 4 2 9 9 H 1.48494 * 109.47145 * 84.99953 * 8 6 4 10 10 H 1.48497 * 109.47300 * 205.00262 * 8 6 4 11 11 H 1.48503 * 109.46685 * 325.00509 * 8 6 4 12 12 N 1.46904 * 109.46795 * 120.00242 * 2 1 3 13 13 C 1.46893 * 110.99676 * 274.99750 * 12 2 1 14 14 C 1.53003 * 109.46768 * 180.02562 * 13 12 2 15 15 H 1.09005 * 109.67762 * 305.51510 * 14 13 12 16 16 C 1.53410 * 109.68337 * 185.00182 * 14 13 12 17 17 C 1.53067 * 108.30214 * 175.56944 * 16 14 13 18 18 C 1.50765 * 109.68117 * 48.20669 * 17 16 14 19 19 C 1.38511 * 118.77025 * 162.17898 * 18 17 16 20 20 C 1.38094 * 120.31878 * 179.84280 * 19 18 17 21 21 C 1.38291 * 119.98746 * 359.97200 * 20 19 18 22 22 C 1.37967 * 119.95476 * 0.07900 * 21 20 19 23 23 C 1.38372 * 121.40278 * 342.15519 * 18 17 16 24 24 O 1.35838 * 121.80666 * 0.51807 * 23 18 17 25 25 H 1.09002 * 109.47350 * 294.97862 * 1 2 3 26 26 H 1.09009 * 109.47279 * 54.98039 * 1 2 3 27 27 H 1.09001 * 109.47687 * 174.97391 * 1 2 3 28 28 H 0.96999 * 120.00186 * 179.97438 * 7 6 4 29 29 H 1.00899 * 110.99603 * 151.04534 * 12 2 1 30 30 H 1.08997 * 109.47581 * 299.99975 * 13 12 2 31 31 H 1.08997 * 109.47269 * 60.00460 * 13 12 2 32 32 H 1.08997 * 109.69655 * 295.27200 * 16 14 13 33 33 H 1.09002 * 109.69675 * 55.86628 * 16 14 13 34 34 H 1.08996 * 109.43857 * 168.27477 * 17 16 14 35 35 H 1.09004 * 109.43423 * 288.14610 * 17 16 14 36 36 H 1.08000 * 119.83530 * 359.81195 * 19 18 17 37 37 H 1.08003 * 120.00750 * 179.97438 * 20 19 18 38 38 H 1.07999 * 120.02163 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.89157 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5800 -1.6361 -1.1338 6 6 1.7926 -0.1785 -2.4797 7 7 1.2153 0.9976 -2.5940 8 14 2.2877 -1.1284 -4.0101 9 1 1.2111 -2.0865 -4.3680 10 1 2.5008 -0.1809 -5.1335 11 1 3.5450 -1.8730 -3.7452 12 7 2.0196 -0.6926 1.1995 13 6 2.0824 0.2225 2.3468 14 6 2.5961 -0.5331 3.5741 15 1 1.9785 -1.4143 3.7477 16 6 2.5458 0.3833 4.8035 17 6 2.9593 -0.4343 6.0296 18 6 4.2243 -1.1972 5.7281 19 6 4.9706 -1.6945 6.7838 20 6 6.1328 -2.4007 6.5442 21 6 6.5562 -2.6147 5.2452 22 6 5.8176 -2.1209 4.1897 23 6 4.6472 -1.4069 4.4274 24 8 3.9520 -0.9289 3.3628 25 1 -0.3634 0.4340 0.9315 26 1 -0.3634 0.5898 -0.8417 27 1 -0.3634 -1.0237 -0.0900 28 1 1.0470 1.3720 -3.4729 29 1 2.9172 -1.1206 1.0287 30 1 2.7588 1.0461 2.1183 31 1 1.0870 0.6162 2.5525 32 1 3.2345 1.2172 4.6685 33 1 1.5324 0.7613 4.9387 34 1 3.1321 0.2363 6.8713 35 1 2.1644 -1.1358 6.2828 36 1 4.6421 -1.5286 7.7991 37 1 6.7110 -2.7858 7.3711 38 1 7.4649 -3.1673 5.0571 39 1 6.1490 -2.2890 3.1756 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700367975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:58 Heat of formation + Delta-G solvation = -27.639891 kcal Electronic energy + Delta-G solvation = -19266.569687 eV Core-core repulsion = 16366.434981 eV Total energy + Delta-G solvation = -2900.134705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.61037 -37.69793 -35.72602 -34.31672 -32.67543 -30.87588 -30.16846 -28.59395 -26.19695 -25.06506 -23.68080 -22.48290 -22.06751 -19.93997 -19.59313 -17.78529 -16.63983 -16.50205 -15.50766 -14.91872 -14.85605 -14.44788 -14.29660 -13.93942 -13.75831 -13.38236 -13.21962 -12.73330 -12.53611 -12.34248 -11.81753 -11.60200 -11.48466 -11.27615 -11.01910 -10.82488 -10.75715 -10.62248 -10.37124 -10.23753 -10.18485 -9.78342 -8.83021 -8.81355 -8.45406 -8.07217 -7.26993 -6.02976 -4.06199 1.29490 1.45155 3.32573 3.38221 3.39620 3.41639 3.76099 4.41736 4.57671 4.66977 4.74940 4.85838 5.04333 5.15710 5.27101 5.31302 5.43662 5.45692 5.52960 5.60178 5.72472 5.76756 5.85193 5.98365 6.07380 6.20298 6.31122 6.35678 6.46521 6.49996 6.81695 6.84413 7.08735 7.18534 7.43591 7.65223 7.81138 7.86957 8.19544 8.38000 8.69721 9.04867 9.59252 11.06144 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.029041 B = 0.004291 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.930827 B = 6524.194010 C = 7329.326123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.209 3.791 3 H 0.007 0.993 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.689 5.689 13 C 0.069 3.931 14 C 0.094 3.906 15 H 0.079 0.921 16 C -0.155 4.155 17 C -0.075 4.075 18 C -0.166 4.166 19 C -0.087 4.087 20 C -0.162 4.162 21 C -0.089 4.089 22 C -0.152 4.152 23 C 0.145 3.855 24 O -0.307 6.307 25 H 0.007 0.993 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.261 0.739 29 H 0.339 0.661 30 H 0.030 0.970 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 -3.173 18.342 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.101 3.899 3 H 0.025 0.975 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.320 5.320 13 C -0.061 4.061 14 C 0.038 3.962 15 H 0.097 0.903 16 C -0.193 4.193 17 C -0.112 4.112 18 C -0.167 4.167 19 C -0.105 4.105 20 C -0.180 4.180 21 C -0.108 4.108 22 C -0.170 4.170 23 C 0.099 3.901 24 O -0.220 6.220 25 H 0.026 0.974 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.157 0.843 30 H 0.048 0.952 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.310 -3.244 18.148 19.185 hybrid contribution 0.858 0.124 -0.922 1.266 sum 6.168 -3.120 17.226 18.561 Atomic orbital electron populations 1.21653 0.98201 0.99726 0.98117 1.19123 0.92194 0.92849 0.85710 0.97487 1.21230 1.35590 1.08304 0.90588 0.92151 1.24922 0.95195 0.94742 0.99049 1.69946 1.43172 1.16152 1.23731 0.86557 0.78977 0.79698 0.82441 1.20536 1.21356 1.19939 1.60747 1.32793 1.32543 1.05944 1.21951 0.99568 0.94181 0.90402 1.22735 0.80106 0.97610 0.95717 0.90290 1.22257 1.03330 0.98958 0.94734 1.20463 0.94401 0.98043 0.98333 1.19865 0.99890 1.04426 0.92518 1.20849 0.94561 0.97111 0.97965 1.20945 0.97825 1.02441 0.96821 1.20903 0.99053 0.98620 0.92180 1.20685 0.95448 1.00525 1.00366 1.18795 0.92265 0.92975 0.86100 1.86055 1.25877 1.77407 1.32695 0.97373 0.91676 0.94664 0.92943 0.84310 0.95185 0.89921 0.90588 0.89593 0.90324 0.90540 0.86204 0.86251 0.85699 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 9.21 37.16 0.34 -2.58 16 2 C 0.21 5.36 2.47 -68.86 -0.17 5.19 16 3 H 0.01 0.21 7.78 -51.93 -0.40 -0.20 16 4 C -0.52 -14.49 8.50 -34.44 -0.29 -14.79 16 5 H 0.06 1.68 7.68 -52.49 -0.40 1.27 16 6 C 0.06 1.76 5.29 -17.82 -0.09 1.67 16 7 N -0.89 -25.85 11.98 55.43 0.66 -25.18 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.69 -15.07 6.30 -107.96 -0.68 -15.75 16 13 C 0.07 1.25 5.20 -3.83 -0.02 1.23 16 14 C 0.09 1.44 3.03 -26.52 -0.08 1.36 16 15 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 16 C -0.15 -1.87 5.49 -26.48 -0.15 -2.01 16 17 C -0.08 -0.81 5.86 -27.82 -0.16 -0.98 16 18 C -0.17 -2.12 5.75 -104.44 -0.60 -2.72 16 19 C -0.09 -0.95 9.67 -39.53 -0.38 -1.33 16 20 C -0.16 -1.69 10.04 -39.61 -0.40 -2.09 16 21 C -0.09 -1.00 10.04 -39.66 -0.40 -1.40 16 22 C -0.15 -2.05 9.94 -39.34 -0.39 -2.44 16 23 C 0.14 2.15 6.47 -39.19 -0.25 1.90 16 24 O -0.31 -5.15 9.49 -19.23 -0.18 -5.33 16 25 H 0.01 0.16 7.35 -51.93 -0.38 -0.22 16 26 H 0.06 1.73 6.84 -51.92 -0.36 1.37 16 27 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.34 7.60 7.86 -39.29 -0.31 7.29 16 30 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 31 H 0.08 1.42 7.36 -51.93 -0.38 1.04 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -29.81 317.91 -9.49 -39.30 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.02 Total: 4.60 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -3.05 Total: -18.99 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: -0.02 Total: -40.93 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.18 Total: -5.33 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.81 -9.49 -39.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700367975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.659 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds