Wall clock time and date at job start Mon Mar 30 2020 06:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46932 * 2 1 4 4 C 1.50698 * 109.47062 * 239.99977 * 2 1 3 5 5 H 1.07996 * 120.00221 * 245.35300 * 4 2 1 6 6 C 1.37876 * 119.99902 * 65.35066 * 4 2 1 7 7 N 1.31518 * 120.00343 * 5.14586 * 6 4 2 8 8 Si 1.86807 * 120.00265 * 185.14411 * 6 4 2 9 9 H 1.48494 * 109.47145 * 84.99953 * 8 6 4 10 10 H 1.48497 * 109.47300 * 205.00262 * 8 6 4 11 11 H 1.48503 * 109.46685 * 325.00509 * 8 6 4 12 12 N 1.46904 * 109.46795 * 120.00242 * 2 1 3 13 13 C 1.46893 * 110.99676 * 274.99750 * 12 2 1 14 14 C 1.53003 * 109.46768 * 180.02562 * 13 12 2 15 15 H 1.09005 * 109.67762 * 305.51510 * 14 13 12 16 16 C 1.53410 * 109.68337 * 185.00182 * 14 13 12 17 17 C 1.53067 * 108.30214 * 175.56944 * 16 14 13 18 18 C 1.50765 * 109.68117 * 48.20669 * 17 16 14 19 19 C 1.38511 * 118.77025 * 162.17898 * 18 17 16 20 20 C 1.38094 * 120.31878 * 179.84280 * 19 18 17 21 21 C 1.38291 * 119.98746 * 359.97200 * 20 19 18 22 22 C 1.37967 * 119.95476 * 0.07900 * 21 20 19 23 23 C 1.38372 * 121.40278 * 342.15519 * 18 17 16 24 24 O 1.35838 * 121.80666 * 0.51807 * 23 18 17 25 25 H 1.09002 * 109.47350 * 294.97862 * 1 2 3 26 26 H 1.09009 * 109.47279 * 54.98039 * 1 2 3 27 27 H 1.09001 * 109.47687 * 174.97391 * 1 2 3 28 28 H 0.96999 * 120.00186 * 179.97438 * 7 6 4 29 29 H 1.00899 * 110.99603 * 151.04534 * 12 2 1 30 30 H 1.08997 * 109.47581 * 299.99975 * 13 12 2 31 31 H 1.08997 * 109.47269 * 60.00460 * 13 12 2 32 32 H 1.08997 * 109.69655 * 295.27200 * 16 14 13 33 33 H 1.09002 * 109.69675 * 55.86628 * 16 14 13 34 34 H 1.08996 * 109.43857 * 168.27477 * 17 16 14 35 35 H 1.09004 * 109.43423 * 288.14610 * 17 16 14 36 36 H 1.08000 * 119.83530 * 359.81195 * 19 18 17 37 37 H 1.08003 * 120.00750 * 179.97438 * 20 19 18 38 38 H 1.07999 * 120.02163 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.89157 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5800 -1.6361 -1.1338 6 6 1.7926 -0.1785 -2.4797 7 7 1.2153 0.9976 -2.5940 8 14 2.2877 -1.1284 -4.0101 9 1 1.2111 -2.0865 -4.3680 10 1 2.5008 -0.1809 -5.1335 11 1 3.5450 -1.8730 -3.7452 12 7 2.0196 -0.6926 1.1995 13 6 2.0824 0.2225 2.3468 14 6 2.5961 -0.5331 3.5741 15 1 1.9785 -1.4143 3.7477 16 6 2.5458 0.3833 4.8035 17 6 2.9593 -0.4343 6.0296 18 6 4.2243 -1.1972 5.7281 19 6 4.9706 -1.6945 6.7838 20 6 6.1328 -2.4007 6.5442 21 6 6.5562 -2.6147 5.2452 22 6 5.8176 -2.1209 4.1897 23 6 4.6472 -1.4069 4.4274 24 8 3.9520 -0.9289 3.3628 25 1 -0.3634 0.4340 0.9315 26 1 -0.3634 0.5898 -0.8417 27 1 -0.3634 -1.0237 -0.0900 28 1 1.0470 1.3720 -3.4729 29 1 2.9172 -1.1206 1.0287 30 1 2.7588 1.0461 2.1183 31 1 1.0870 0.6162 2.5525 32 1 3.2345 1.2172 4.6685 33 1 1.5324 0.7613 4.9387 34 1 3.1321 0.2363 6.8713 35 1 2.1644 -1.1358 6.2828 36 1 4.6421 -1.5286 7.7991 37 1 6.7110 -2.7858 7.3711 38 1 7.4649 -3.1673 5.0571 39 1 6.1490 -2.2890 3.1756 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700367975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:58 Heat of formation + Delta-G solvation = -45.442791 kcal Electronic energy + Delta-G solvation = -19267.341678 eV Core-core repulsion = 16366.434981 eV Total energy + Delta-G solvation = -2900.906697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.63711 -38.78677 -37.46053 -35.37864 -34.50671 -32.30954 -31.09213 -30.15606 -27.68138 -27.03754 -24.70760 -23.53546 -23.29751 -21.73692 -20.75960 -18.83543 -18.60916 -17.52872 -16.94096 -16.60008 -16.01090 -15.80797 -15.40641 -15.20689 -15.04312 -14.87034 -14.26800 -14.12281 -13.89387 -13.65016 -13.27445 -13.06769 -12.83886 -12.67395 -12.62537 -12.35869 -12.29382 -12.27467 -12.04424 -11.74121 -11.55570 -11.24953 -10.89418 -10.59267 -9.69826 -9.11809 -9.05860 -8.18109 -6.29143 0.40395 0.51889 1.40516 1.41842 1.51477 2.31299 2.40253 2.84453 3.13373 3.38235 3.73586 3.77643 3.88046 4.07917 4.11353 4.24922 4.35886 4.42002 4.52206 4.59306 4.66732 4.69947 4.83423 4.85654 4.92547 5.03416 5.06988 5.11765 5.16396 5.20215 5.40517 5.43018 5.56642 5.62315 5.64499 5.80906 5.95405 6.13704 6.40541 6.58830 6.73909 6.94976 7.40750 8.90556 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.029041 B = 0.004291 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.930827 B = 6524.194010 C = 7329.326123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.212 3.788 3 H -0.027 1.027 4 C -0.541 4.541 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.270 1.270 12 N -0.685 5.685 13 C 0.071 3.929 14 C 0.099 3.901 15 H 0.075 0.925 16 C -0.148 4.148 17 C -0.072 4.072 18 C -0.176 4.176 19 C -0.088 4.088 20 C -0.157 4.157 21 C -0.091 4.091 22 C -0.175 4.175 23 C 0.107 3.893 24 O -0.337 6.337 25 H 0.033 0.967 26 H 0.041 0.959 27 H 0.032 0.968 28 H 0.263 0.737 29 H 0.333 0.667 30 H 0.015 0.985 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.331 -4.021 20.514 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 H -0.009 1.009 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.786 3.214 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.316 5.316 13 C -0.059 4.059 14 C 0.043 3.957 15 H 0.093 0.907 16 C -0.186 4.186 17 C -0.109 4.109 18 C -0.177 4.177 19 C -0.106 4.106 20 C -0.175 4.175 21 C -0.109 4.109 22 C -0.194 4.194 23 C 0.063 3.937 24 O -0.252 6.252 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.033 0.967 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.107 0.893 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.692 -4.097 20.346 21.520 hybrid contribution 0.814 0.377 -1.515 1.761 sum 6.505 -3.721 18.830 20.267 Atomic orbital electron populations 1.21466 0.97293 0.99228 0.98464 1.18961 0.92871 0.91022 0.86806 1.00909 1.21545 1.36004 1.08403 0.91974 0.92669 1.25723 0.95100 0.95555 1.02026 1.70060 1.43851 1.17363 1.24525 0.85526 0.78805 0.78433 0.78610 1.19792 1.20730 1.19464 1.60700 1.32343 1.32923 1.05595 1.22023 1.00093 0.93532 0.90247 1.22585 0.79837 0.97780 0.95475 0.90672 1.22225 1.04456 0.98165 0.93766 1.20527 0.93847 0.98335 0.98156 1.20180 1.00893 1.04582 0.92004 1.21252 0.94267 0.96205 0.98853 1.21391 0.97669 1.01175 0.97272 1.21229 0.99493 0.98149 0.92047 1.20862 0.96023 1.01622 1.00894 1.19140 0.93075 0.94837 0.86690 1.85988 1.26393 1.78364 1.34428 0.94809 0.93952 0.94915 0.92758 0.85021 0.96672 0.88791 0.91345 0.87523 0.87775 0.89292 0.83147 0.83066 0.83317 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.28 9.21 71.98 0.66 -4.62 16 2 C 0.21 11.20 2.47 44.17 0.11 11.31 16 3 H -0.03 -1.57 7.78 -2.39 -0.02 -1.59 16 4 C -0.54 -30.96 8.50 25.60 0.22 -30.74 16 5 H 0.06 3.14 7.68 -2.91 -0.02 3.12 16 6 C 0.02 0.88 5.29 84.65 0.45 1.32 16 7 N -0.92 -54.24 11.98 21.45 0.26 -53.98 16 8 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 N -0.69 -30.85 6.30 -495.47 -3.12 -33.97 16 13 C 0.07 2.61 5.20 86.31 0.45 3.06 16 14 C 0.10 3.05 3.03 30.73 0.09 3.14 16 15 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 16 C -0.15 -3.37 5.49 30.75 0.17 -3.20 16 17 C -0.07 -1.36 5.86 29.89 0.18 -1.19 16 18 C -0.18 -4.19 5.75 -19.75 -0.11 -4.30 16 19 C -0.09 -1.65 9.67 22.30 0.22 -1.43 16 20 C -0.16 -2.78 10.04 22.25 0.22 -2.56 16 21 C -0.09 -1.89 10.04 22.22 0.22 -1.67 16 22 C -0.18 -4.82 9.94 22.42 0.22 -4.60 16 23 C 0.11 3.23 6.47 22.52 0.15 3.37 16 24 O -0.34 -11.74 9.49 -91.73 -0.87 -12.61 16 25 H 0.03 1.45 7.35 -2.39 -0.02 1.44 16 26 H 0.04 2.28 6.84 -2.38 -0.02 2.26 16 27 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.33 15.60 7.86 -89.69 -0.71 14.89 16 30 H 0.02 0.60 8.06 -2.39 -0.02 0.58 16 31 H 0.09 3.20 7.36 -2.39 -0.02 3.19 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.12 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -65.75 317.91 1.85 -63.90 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.32 Total: 22.11 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 3.24 Total: -32.11 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -2.87 Total: -87.95 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.87 Total: -12.61 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -65.75 1.85 -63.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700367975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.458 kcal (2) G-P(sol) polarization free energy of solvation -65.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds