Wall clock time and date at job start Mon Mar 30 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46839 * 2 1 4 4 C 1.53001 * 109.47122 * 240.00041 * 2 1 3 5 5 C 1.50698 * 109.46890 * 174.99831 * 4 2 1 6 6 H 1.08002 * 120.00268 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99739 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99992 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99696 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47494 * 89.99642 * 9 7 5 11 11 H 1.48502 * 109.46832 * 209.99694 * 9 7 5 12 12 H 1.48504 * 109.46942 * 329.99329 * 9 7 5 13 13 O 1.42894 * 109.47075 * 119.99383 * 2 1 3 14 14 C 1.35893 * 117.00563 * 275.09031 * 13 2 1 15 15 C 1.38579 * 119.88832 * 5.46797 * 14 13 2 16 16 C 1.38119 * 119.77041 * 179.97438 * 15 14 13 17 17 C 1.38090 * 119.92977 * 0.10417 * 16 15 14 18 18 C 1.38731 * 120.49763 * 359.96850 * 17 16 15 19 19 C 1.37786 * 119.75294 * 359.87841 * 18 17 16 20 20 C 1.50714 * 121.68578 * 180.26441 * 19 18 17 21 21 C 1.52900 * 109.94915 * 343.17390 * 20 19 18 22 22 N 1.47167 * 108.48731 * 50.38731 * 21 20 19 23 23 C 1.46624 * 110.26317 * 288.72998 * 22 21 20 24 24 H 1.08999 * 109.47400 * 300.00543 * 1 2 3 25 25 H 1.09003 * 109.47451 * 59.99910 * 1 2 3 26 26 H 1.08992 * 109.47429 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47131 * 294.99892 * 4 2 1 28 28 H 1.08997 * 109.46824 * 55.00010 * 4 2 1 29 29 H 0.97003 * 119.99874 * 179.97438 * 8 7 5 30 30 H 1.08003 * 120.10885 * 0.02562 * 15 14 13 31 31 H 1.08002 * 120.03623 * 180.10128 * 16 15 14 32 32 H 1.08004 * 119.74972 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.39896 * 223.02114 * 20 19 18 34 34 H 1.08993 * 109.37714 * 103.31089 * 20 19 18 35 35 H 1.08997 * 109.63901 * 290.68798 * 21 20 19 36 36 H 1.08998 * 109.63544 * 170.08653 * 21 20 19 37 37 H 1.00906 * 110.99671 * 165.29884 * 22 21 20 38 38 H 1.09000 * 109.26991 * 172.73518 * 23 22 21 39 39 H 1.09006 * 109.26636 * 292.23974 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0861 -0.5391 7 6 4.2303 -1.1925 -2.3583 8 7 3.5764 -1.8368 -3.3000 9 14 6.0921 -1.0613 -2.4366 10 1 6.7001 -2.2144 -1.7255 11 1 6.5295 -1.0683 -3.8557 12 1 6.5267 0.2035 -1.7909 13 8 2.0063 -0.6735 1.1668 14 6 2.1107 0.0623 2.3045 15 6 1.6556 1.3710 2.3248 16 6 1.7624 2.1165 3.4826 17 6 2.3234 1.5563 4.6133 18 6 2.7817 0.2470 4.5972 19 6 2.6741 -0.5010 3.4451 20 6 3.1522 -1.9288 3.3807 21 6 4.0893 -2.2186 4.5536 22 7 3.4323 -1.7796 5.7952 23 6 3.3882 -0.3153 5.8561 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.7517 -1.7714 -1.2056 28 1 1.6054 -0.2617 -2.1369 29 1 4.0607 -2.2429 -4.0358 30 1 1.2182 1.8063 1.4384 31 1 1.4077 3.1363 3.5037 32 1 2.4051 2.1417 5.5173 33 1 3.6847 -2.0904 2.4435 34 1 2.2946 -2.5998 3.4284 35 1 5.0228 -1.6721 4.4203 36 1 4.2919 -3.2884 4.6050 37 1 3.8978 -2.1614 6.6051 38 1 2.7879 -0.0088 6.7127 39 1 4.4013 0.0706 5.9702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702904233.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:16 Heat of formation + Delta-G solvation = -45.495520 kcal Electronic energy + Delta-G solvation = -19786.618941 eV Core-core repulsion = 16885.709958 eV Total energy + Delta-G solvation = -2900.908983 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.47092 -39.46435 -37.09631 -35.50565 -33.81556 -32.51585 -31.79249 -29.54513 -29.29967 -25.58618 -25.32420 -24.35367 -23.18681 -21.84186 -20.20529 -18.87743 -18.51952 -17.60993 -16.73911 -16.53714 -16.39713 -15.99823 -15.67763 -15.32727 -14.96925 -14.65421 -14.13738 -14.01072 -13.83742 -13.68733 -13.38545 -13.29861 -13.10731 -12.83259 -12.69211 -12.55234 -12.34918 -12.26946 -11.98642 -11.73070 -11.49162 -11.21903 -11.05317 -10.61209 -9.68386 -9.36260 -8.89114 -8.23385 -6.32360 0.40277 0.57589 1.35219 1.36554 1.47398 2.37518 2.47203 2.82547 3.10978 3.29437 3.75075 3.83180 4.01282 4.12571 4.18480 4.19688 4.30186 4.38818 4.45163 4.49530 4.55060 4.57564 4.73492 4.82316 4.86615 4.94177 4.98727 5.04696 5.14942 5.25507 5.35203 5.44832 5.54404 5.56953 5.65962 5.73858 5.93194 5.98481 6.16985 6.55843 6.72328 6.79500 7.34905 8.88423 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.006221 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.958784 B = 4499.903618 C = 5259.588782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 H 0.062 0.938 4 C 0.030 3.970 5 C -0.529 4.529 6 H 0.047 0.953 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.268 1.268 13 O -0.317 6.317 14 C 0.112 3.888 15 C -0.230 4.230 16 C -0.083 4.083 17 C -0.162 4.162 18 C -0.056 4.056 19 C -0.133 4.133 20 C -0.067 4.067 21 C 0.063 3.937 22 N -0.690 5.690 23 C 0.100 3.900 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.055 0.945 27 H -0.002 1.002 28 H 0.025 0.975 29 H 0.265 0.735 30 H 0.130 0.870 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.094 0.906 37 H 0.361 0.639 38 H 0.112 0.888 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.473 5.567 18.785 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.007 4.007 5 C -0.567 4.567 6 H 0.066 0.934 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.192 1.192 13 O -0.230 6.230 14 C 0.066 3.934 15 C -0.248 4.248 16 C -0.100 4.100 17 C -0.181 4.181 18 C -0.056 4.056 19 C -0.134 4.134 20 C -0.104 4.104 21 C -0.066 4.066 22 N -0.322 5.322 23 C -0.029 4.029 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.016 0.984 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.148 0.852 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.113 0.887 37 H 0.181 0.819 38 H 0.130 0.870 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.048 5.192 18.335 19.166 hybrid contribution 1.560 0.128 -0.824 1.769 sum -0.488 5.320 17.512 18.308 Atomic orbital electron populations 1.22295 0.94281 1.02681 1.03064 1.22552 0.93868 0.95958 0.83721 0.92007 1.19098 0.95544 0.95045 0.91005 1.21400 0.93183 1.34442 1.07701 0.93436 1.25837 1.03403 0.94811 0.95235 1.70060 1.37493 1.36730 1.12705 0.85555 0.79843 0.78761 0.77582 1.20012 1.20106 1.19211 1.86164 1.80877 1.39072 1.16927 1.19494 0.95510 0.91406 0.87011 1.21463 1.07971 0.94191 1.01224 1.21164 0.97104 1.00204 0.91577 1.21209 1.02306 0.94661 0.99885 1.19728 0.97867 0.94130 0.93873 1.19144 1.04464 0.97737 0.92007 1.20250 0.99426 0.92446 0.98320 1.21905 0.94068 1.01269 0.89405 1.60533 1.58096 1.08718 1.04897 1.20861 0.99717 0.87645 0.94634 0.91253 0.90011 0.92629 0.98372 0.95712 0.92631 0.85217 0.83067 0.82774 0.92780 0.91571 0.94735 0.88744 0.81855 0.87030 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.86 9.17 71.98 0.66 -5.20 16 2 C 0.09 4.15 2.17 30.59 0.07 4.22 16 3 H 0.06 2.65 6.31 -2.38 -0.02 2.63 16 4 C 0.03 1.62 4.68 29.85 0.14 1.76 16 5 C -0.53 -31.13 8.88 25.60 0.23 -30.90 16 6 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 7 C 0.01 0.30 5.46 84.66 0.46 0.76 16 8 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 9 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 13 O -0.32 -14.41 8.69 -92.35 -0.80 -15.21 16 14 C 0.11 4.37 6.57 22.56 0.15 4.51 16 15 C -0.23 -7.62 8.23 22.32 0.18 -7.44 16 16 C -0.08 -2.15 10.04 22.21 0.22 -1.92 16 17 C -0.16 -3.88 9.64 22.35 0.22 -3.67 16 18 C -0.06 -1.54 5.79 -19.88 -0.12 -1.66 16 19 C -0.13 -4.67 5.78 -19.75 -0.11 -4.78 16 20 C -0.07 -2.28 5.54 29.82 0.17 -2.11 16 21 C 0.06 1.58 6.59 86.22 0.57 2.15 16 22 N -0.69 -14.53 6.87 -518.26 -3.56 -18.10 16 23 C 0.10 2.01 6.34 85.59 0.54 2.56 16 24 H 0.07 2.15 6.90 -2.39 -0.02 2.13 16 25 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.13 4.14 5.41 -2.91 -0.02 4.13 16 31 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 32 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.05 2.14 7.85 -2.39 -0.02 2.12 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.03 0.87 8.05 -2.39 -0.02 0.85 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.36 5.26 8.90 -89.69 -0.80 4.46 16 38 H 0.11 1.70 8.13 -2.39 -0.02 1.68 16 39 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -69.60 315.28 1.56 -68.04 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.24 Total: 16.05 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 3.37 Total: -41.72 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -3.28 Total: -74.77 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.80 Total: -15.21 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -69.60 1.56 -68.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702904233.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.542 kcal (2) G-P(sol) polarization free energy of solvation -69.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds