Wall clock time and date at job start Mon Mar 30 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47217 * 2 1 4 4 C 1.52998 * 109.47253 * 120.00645 * 2 1 3 5 5 C 1.50704 * 109.46913 * 185.00155 * 4 2 1 6 6 H 1.07994 * 119.99768 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99944 * 179.97438 * 5 4 2 8 8 N 1.31521 * 120.00054 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47434 * 59.99725 * 9 7 5 11 11 H 1.48506 * 109.47082 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47124 * 299.99575 * 9 7 5 13 13 O 1.42902 * 109.46854 * 240.00220 * 2 1 3 14 14 C 1.35904 * 116.99913 * 84.80154 * 13 2 1 15 15 C 1.38577 * 119.88347 * 354.57900 * 14 13 2 16 16 C 1.38128 * 119.76935 * 180.02562 * 15 14 13 17 17 C 1.38094 * 119.92494 * 0.07479 * 16 15 14 18 18 C 1.38727 * 120.49519 * 0.02914 * 17 16 15 19 19 C 1.37783 * 119.76466 * 359.80887 * 18 17 16 20 20 C 1.50707 * 121.68403 * 180.52335 * 19 18 17 21 21 C 1.52885 * 109.96535 * 343.03202 * 20 19 18 22 22 N 1.47167 * 108.51292 * 50.35949 * 21 20 19 23 23 C 1.46623 * 110.25430 * 288.77776 * 22 21 20 24 24 H 1.09002 * 109.47217 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46965 * 299.99082 * 1 2 3 26 26 H 1.08990 * 109.47508 * 59.99659 * 1 2 3 27 27 H 1.08995 * 109.47109 * 304.99456 * 4 2 1 28 28 H 1.08994 * 109.47416 * 65.00122 * 4 2 1 29 29 H 0.96995 * 120.00009 * 180.02562 * 8 7 5 30 30 H 1.08007 * 120.11913 * 359.73560 * 15 14 13 31 31 H 1.07997 * 120.04081 * 180.02562 * 16 15 14 32 32 H 1.08004 * 119.74790 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.38497 * 103.18306 * 20 19 18 34 34 H 1.09003 * 109.38453 * 222.87602 * 20 19 18 35 35 H 1.09000 * 109.63289 * 290.65495 * 21 20 19 36 36 H 1.08994 * 109.79657 * 170.16740 * 21 20 19 37 37 H 1.00896 * 110.99971 * 165.34650 * 22 21 20 38 38 H 1.09000 * 109.29845 * 292.25650 * 23 22 21 39 39 H 1.09002 * 109.12785 * 172.77925 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0861 0.5391 7 6 4.2304 -1.1928 2.3581 8 7 3.5764 -1.8364 3.3003 9 14 6.0922 -1.0615 2.4363 10 1 6.4856 0.3692 2.4949 11 1 6.5872 -1.7605 3.6495 12 1 6.6839 -1.6885 1.2272 13 8 2.0063 -0.6736 -1.1668 14 6 2.1085 0.0617 -2.3052 15 6 1.6522 1.3700 -2.3254 16 6 1.7567 2.1150 -3.4838 17 6 2.3132 1.5536 -4.6161 18 6 2.7693 0.2435 -4.6009 19 6 2.6699 -0.5020 -3.4465 20 6 3.1620 -1.9249 -3.3783 21 6 3.3481 -2.4811 -4.7901 22 7 4.1508 -1.5235 -5.5676 23 6 3.3623 -0.3234 -5.8642 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8898 27 1 1.6055 -0.2619 2.1369 28 1 1.7517 -1.7716 1.2054 29 1 4.0607 -2.2425 4.0360 30 1 1.2121 1.8042 -1.4398 31 1 1.4029 3.1352 -3.5043 32 1 2.3932 2.1386 -5.5205 33 1 4.1148 -1.9532 -2.8496 34 1 2.4342 -2.5341 -2.8422 35 1 2.3750 -2.6123 -5.2633 36 1 3.8649 -3.4397 -4.7441 37 1 4.4978 -1.9469 -6.4152 38 1 2.5595 -0.5814 -6.5549 39 1 4.0084 0.4234 -6.3257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702904234.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:18 Heat of formation + Delta-G solvation = -25.523374 kcal Electronic energy + Delta-G solvation = -19778.191117 eV Core-core repulsion = 16878.148191 eV Total energy + Delta-G solvation = -2900.042926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.18663 -38.12156 -35.95331 -33.56588 -32.18489 -31.04955 -30.64770 -28.28865 -27.42534 -24.47865 -23.41525 -23.17627 -21.75815 -20.41413 -18.91233 -17.50308 -16.40821 -16.33146 -15.49137 -15.14906 -14.88720 -14.54694 -14.37634 -14.21112 -13.49653 -13.07910 -13.02808 -12.73190 -12.24506 -11.97780 -11.93284 -11.72187 -11.47610 -11.44471 -11.36206 -10.91592 -10.80100 -10.65657 -10.45799 -10.26426 -9.92474 -9.35416 -9.10209 -8.63386 -8.36562 -8.27647 -7.56997 -5.99793 -4.00957 1.60234 1.80705 3.36811 3.40094 3.44781 3.90441 4.04139 4.22229 4.48438 4.81919 4.96776 5.24880 5.29160 5.32891 5.37260 5.40052 5.47673 5.52890 5.60832 5.74514 5.78854 5.84533 5.91666 6.00657 6.09711 6.23688 6.26905 6.50478 6.58612 6.65334 6.73651 6.79286 6.88515 6.94779 7.07374 7.35477 7.52123 7.61033 7.96922 8.19432 8.38831 9.02605 9.62433 11.11585 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.006203 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.758978 B = 4513.106004 C = 5247.469668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 H 0.062 0.938 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 O -0.288 6.288 14 C 0.150 3.850 15 C -0.218 4.218 16 C -0.084 4.084 17 C -0.171 4.171 18 C -0.051 4.051 19 C -0.107 4.107 20 C -0.066 4.066 21 C 0.056 3.944 22 N -0.685 5.685 23 C 0.101 3.899 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.028 0.972 29 H 0.261 0.739 30 H 0.130 0.870 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.342 0.658 38 H 0.041 0.959 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.045 3.311 -16.680 17.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.080 0.920 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.201 1.201 13 O -0.200 6.200 14 C 0.103 3.897 15 C -0.236 4.236 16 C -0.102 4.102 17 C -0.190 4.190 18 C -0.051 4.051 19 C -0.108 4.108 20 C -0.104 4.104 21 C -0.073 4.073 22 N -0.315 5.315 23 C -0.028 4.028 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.159 0.841 38 H 0.059 0.941 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.667 3.262 -15.899 16.639 hybrid contribution 0.302 0.070 -0.414 0.517 sum -3.365 3.332 -16.312 16.986 Atomic orbital electron populations 1.22412 0.97120 1.02535 1.01399 1.22865 0.91721 0.97165 0.85175 0.92016 1.19252 0.96577 0.96442 0.88738 1.21082 0.91668 1.34488 1.07879 0.92657 1.24964 0.98415 0.95237 0.95649 1.69941 1.35640 1.36044 1.12076 0.86658 0.85757 0.78245 0.77410 1.20289 1.21291 1.20077 1.86254 1.79719 1.37999 1.16022 1.19119 0.92964 0.90183 0.87434 1.21309 1.07658 0.94751 0.99922 1.20743 0.98059 0.98970 0.92448 1.20719 1.04620 0.94964 0.98719 1.19237 0.98140 0.93735 0.93993 1.18826 1.03111 0.97406 0.91410 1.20302 1.02317 0.91937 0.95796 1.22023 0.95598 0.95035 0.94647 1.60584 1.38540 1.07391 1.25016 1.20727 0.95368 0.93006 0.93660 0.91978 0.91446 0.93317 0.94452 0.95327 0.92917 0.85266 0.86389 0.86688 0.89756 0.90103 0.94913 0.90371 0.84065 0.94092 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 9.16 37.16 0.34 -2.71 16 2 C 0.09 1.82 2.17 -26.73 -0.06 1.76 16 3 H 0.06 1.28 6.31 -51.93 -0.33 0.95 16 4 C 0.03 0.68 4.68 -27.88 -0.13 0.55 16 5 C -0.51 -14.65 8.88 -34.44 -0.31 -14.95 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 O -0.29 -6.20 8.69 -19.44 -0.17 -6.37 16 14 C 0.15 2.87 6.57 -39.13 -0.26 2.61 16 15 C -0.22 -3.68 8.23 -39.50 -0.32 -4.00 16 16 C -0.08 -1.21 10.04 -39.67 -0.40 -1.61 16 17 C -0.17 -2.37 9.64 -39.45 -0.38 -2.75 16 18 C -0.05 -0.76 5.79 -104.64 -0.61 -1.37 16 19 C -0.11 -1.87 5.78 -104.46 -0.60 -2.47 16 20 C -0.07 -1.09 5.54 -27.94 -0.15 -1.24 16 21 C 0.06 0.71 6.59 -3.74 -0.02 0.69 16 22 N -0.68 -8.28 6.88 -115.17 -0.79 -9.07 16 23 C 0.10 1.20 6.34 -5.16 -0.03 1.17 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.75 6.88 -51.93 -0.36 0.39 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.13 2.09 5.40 -52.48 -0.28 1.80 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.08 1.36 7.85 -51.93 -0.41 0.95 16 35 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.34 3.11 8.90 -39.29 -0.35 2.76 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.89 8.13 -51.93 -0.42 0.47 16 LS Contribution 315.27 15.07 4.75 4.75 Total: -1.00 -31.28 315.27 -9.44 -40.72 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.91 Total: 1.73 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -3.03 Total: -22.74 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.06 Total: -35.24 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.17 Total: -6.37 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.28 -9.44 -40.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702904234.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.199 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds