Wall clock time and date at job start Mon Mar 30 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47217 * 2 1 4 4 C 1.52998 * 109.47253 * 120.00645 * 2 1 3 5 5 C 1.50704 * 109.46913 * 185.00155 * 4 2 1 6 6 H 1.07994 * 119.99768 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99944 * 179.97438 * 5 4 2 8 8 N 1.31521 * 120.00054 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47434 * 59.99725 * 9 7 5 11 11 H 1.48506 * 109.47082 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47124 * 299.99575 * 9 7 5 13 13 O 1.42902 * 109.46854 * 240.00220 * 2 1 3 14 14 C 1.35904 * 116.99913 * 84.80154 * 13 2 1 15 15 C 1.38577 * 119.88347 * 354.57900 * 14 13 2 16 16 C 1.38128 * 119.76935 * 180.02562 * 15 14 13 17 17 C 1.38094 * 119.92494 * 0.07479 * 16 15 14 18 18 C 1.38727 * 120.49519 * 0.02914 * 17 16 15 19 19 C 1.37783 * 119.76466 * 359.80887 * 18 17 16 20 20 C 1.50707 * 121.68403 * 180.52335 * 19 18 17 21 21 C 1.52885 * 109.96535 * 343.03202 * 20 19 18 22 22 N 1.47167 * 108.51292 * 50.35949 * 21 20 19 23 23 C 1.46623 * 110.25430 * 288.77776 * 22 21 20 24 24 H 1.09002 * 109.47217 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46965 * 299.99082 * 1 2 3 26 26 H 1.08990 * 109.47508 * 59.99659 * 1 2 3 27 27 H 1.08995 * 109.47109 * 304.99456 * 4 2 1 28 28 H 1.08994 * 109.47416 * 65.00122 * 4 2 1 29 29 H 0.96995 * 120.00009 * 180.02562 * 8 7 5 30 30 H 1.08007 * 120.11913 * 359.73560 * 15 14 13 31 31 H 1.07997 * 120.04081 * 180.02562 * 16 15 14 32 32 H 1.08004 * 119.74790 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.38497 * 103.18306 * 20 19 18 34 34 H 1.09003 * 109.38453 * 222.87602 * 20 19 18 35 35 H 1.09000 * 109.63289 * 290.65495 * 21 20 19 36 36 H 1.08994 * 109.79657 * 170.16740 * 21 20 19 37 37 H 1.00896 * 110.99971 * 165.34650 * 22 21 20 38 38 H 1.09000 * 109.29845 * 292.25650 * 23 22 21 39 39 H 1.09002 * 109.12785 * 172.77925 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0861 0.5391 7 6 4.2304 -1.1928 2.3581 8 7 3.5764 -1.8364 3.3003 9 14 6.0922 -1.0615 2.4363 10 1 6.4856 0.3692 2.4949 11 1 6.5872 -1.7605 3.6495 12 1 6.6839 -1.6885 1.2272 13 8 2.0063 -0.6736 -1.1668 14 6 2.1085 0.0617 -2.3052 15 6 1.6522 1.3700 -2.3254 16 6 1.7567 2.1150 -3.4838 17 6 2.3132 1.5536 -4.6161 18 6 2.7693 0.2435 -4.6009 19 6 2.6699 -0.5020 -3.4465 20 6 3.1620 -1.9249 -3.3783 21 6 3.3481 -2.4811 -4.7901 22 7 4.1508 -1.5235 -5.5676 23 6 3.3623 -0.3234 -5.8642 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8898 27 1 1.6055 -0.2619 2.1369 28 1 1.7517 -1.7716 1.2054 29 1 4.0607 -2.2425 4.0360 30 1 1.2121 1.8042 -1.4398 31 1 1.4029 3.1352 -3.5043 32 1 2.3932 2.1386 -5.5205 33 1 4.1148 -1.9532 -2.8496 34 1 2.4342 -2.5341 -2.8422 35 1 2.3750 -2.6123 -5.2633 36 1 3.8649 -3.4397 -4.7441 37 1 4.4978 -1.9469 -6.4152 38 1 2.5595 -0.5814 -6.5549 39 1 4.0084 0.4234 -6.3257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702904234.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:18 Heat of formation + Delta-G solvation = -45.386952 kcal Electronic energy + Delta-G solvation = -19779.052466 eV Core-core repulsion = 16878.148191 eV Total energy + Delta-G solvation = -2900.904276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.46977 -39.46345 -37.09579 -35.50390 -33.81424 -32.51804 -31.79172 -29.54186 -29.30082 -25.58534 -25.32286 -24.34803 -23.18806 -21.84699 -20.19224 -18.88788 -18.51048 -17.59567 -16.77879 -16.54876 -16.28312 -15.97073 -15.91032 -15.24831 -14.76084 -14.66940 -14.33137 -14.05301 -13.76088 -13.67360 -13.37948 -13.29385 -12.94964 -12.82994 -12.73427 -12.66608 -12.46430 -12.17752 -11.90374 -11.75940 -11.48975 -11.22528 -11.05951 -10.60526 -9.67428 -9.34895 -8.88850 -8.23225 -6.32056 0.40258 0.57365 1.35481 1.38489 1.46561 2.38078 2.46492 2.83247 3.11080 3.30765 3.75199 3.82894 4.01392 4.12853 4.18504 4.20705 4.30136 4.38417 4.45221 4.49965 4.54971 4.56899 4.73580 4.82211 4.86487 4.92373 4.98809 5.06196 5.14725 5.26600 5.35435 5.44962 5.54709 5.56963 5.66052 5.73949 5.95282 5.98970 6.17293 6.57277 6.72299 6.79547 7.35229 8.88290 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.006203 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.758978 B = 4513.106004 C = 5247.469668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.095 3.905 3 H 0.061 0.939 4 C 0.031 3.969 5 C -0.531 4.531 6 H 0.046 0.954 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.956 3.044 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.274 1.274 13 O -0.317 6.317 14 C 0.112 3.888 15 C -0.230 4.230 16 C -0.083 4.083 17 C -0.162 4.162 18 C -0.055 4.055 19 C -0.133 4.133 20 C -0.067 4.067 21 C 0.065 3.935 22 N -0.697 5.697 23 C 0.101 3.899 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.025 0.975 28 H -0.002 1.002 29 H 0.265 0.735 30 H 0.130 0.870 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.362 0.638 38 H 0.064 0.936 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 4.861 -19.416 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.079 0.921 4 C -0.006 4.006 5 C -0.569 4.569 6 H 0.064 0.936 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.781 3.219 10 H -0.192 1.192 11 H -0.201 1.201 12 H -0.200 1.200 13 O -0.231 6.231 14 C 0.066 3.934 15 C -0.248 4.248 16 C -0.100 4.100 17 C -0.181 4.181 18 C -0.056 4.056 19 C -0.134 4.134 20 C -0.104 4.104 21 C -0.064 4.064 22 N -0.330 5.330 23 C -0.028 4.028 24 H 0.074 0.926 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.017 0.983 29 H 0.074 0.926 30 H 0.148 0.852 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.182 0.818 38 H 0.082 0.918 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.187 4.819 -18.662 19.536 hybrid contribution 0.149 -0.373 0.353 0.535 sum -3.039 4.446 -18.309 19.084 Atomic orbital electron populations 1.22294 0.94167 1.02720 1.03090 1.22553 0.93920 0.95937 0.83705 0.92080 1.19091 0.95437 0.95066 0.91034 1.21378 0.93273 1.34512 1.07711 0.93564 1.25816 1.03328 0.94784 0.95238 1.70050 1.37534 1.36710 1.12638 0.85636 0.79891 0.78752 0.77633 1.19195 1.20124 1.19956 1.86165 1.80923 1.39106 1.16896 1.19499 0.95464 0.91417 0.87042 1.21465 1.07982 0.94168 1.01230 1.21168 0.97122 1.00190 0.91556 1.21209 1.02451 0.94565 0.99831 1.19732 0.97383 0.94220 0.94238 1.19136 1.03987 0.98055 0.92174 1.20243 1.00019 0.92166 0.98015 1.21893 0.96617 0.95501 0.92374 1.60496 1.38664 1.07578 1.26231 1.20853 0.96362 0.93269 0.92267 0.92551 0.90040 0.91180 0.95685 0.98323 0.92612 0.85206 0.83062 0.82775 0.92889 0.91990 0.93833 0.88994 0.81820 0.91823 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.77 9.16 71.98 0.66 -5.11 16 2 C 0.09 4.15 2.17 30.59 0.07 4.21 16 3 H 0.06 2.63 6.31 -2.39 -0.02 2.62 16 4 C 0.03 1.66 4.68 29.85 0.14 1.80 16 5 C -0.53 -31.55 8.88 25.60 0.23 -31.33 16 6 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 9 Si 0.96 46.25 29.54 68.60 2.03 48.27 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 13 O -0.32 -14.44 8.69 -92.47 -0.80 -15.25 16 14 C 0.11 4.37 6.57 22.56 0.15 4.52 16 15 C -0.23 -7.61 8.23 22.32 0.18 -7.43 16 16 C -0.08 -2.14 10.04 22.21 0.22 -1.92 16 17 C -0.16 -3.88 9.64 22.35 0.22 -3.66 16 18 C -0.06 -1.53 5.79 -19.88 -0.12 -1.65 16 19 C -0.13 -4.67 5.78 -19.76 -0.11 -4.79 16 20 C -0.07 -2.29 5.54 29.81 0.17 -2.12 16 21 C 0.07 1.59 6.59 86.21 0.57 2.16 16 22 N -0.70 -15.12 6.88 -518.29 -3.56 -18.69 16 23 C 0.10 2.03 6.34 85.59 0.54 2.57 16 24 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 25 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.07 2.13 6.88 -2.39 -0.02 2.11 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.13 4.14 5.40 -2.91 -0.02 4.13 16 31 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 32 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.06 2.26 7.85 -2.39 -0.02 2.24 16 35 H 0.04 0.97 8.05 -2.39 -0.02 0.95 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.36 5.42 8.90 -89.70 -0.80 4.62 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 1.72 8.13 -2.39 -0.02 1.70 16 Total: -1.00 -70.49 315.27 1.56 -68.94 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.24 Total: 15.57 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 3.37 Total: -41.91 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -3.28 Total: -75.63 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.80 Total: -15.25 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -70.49 1.56 -68.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702904234.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.550 kcal (2) G-P(sol) polarization free energy of solvation -70.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds