Wall clock time and date at job start Mon Mar 30 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47165 * 2 1 4 4 C 1.52997 * 109.47033 * 239.99950 * 2 1 3 5 5 C 1.50704 * 109.46909 * 175.00384 * 4 2 1 6 6 H 1.07996 * 120.00141 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99824 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99902 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99737 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46956 * 89.99973 * 9 7 5 11 11 H 1.48504 * 109.46868 * 209.99652 * 9 7 5 12 12 H 1.48494 * 109.47115 * 329.99871 * 9 7 5 13 13 N 1.46903 * 109.46633 * 120.00240 * 2 1 3 14 14 C 1.46902 * 110.99903 * 274.99568 * 13 2 1 15 15 C 1.50699 * 109.47129 * 180.02562 * 14 13 2 16 16 C 1.37971 * 119.88597 * 259.97830 * 15 14 13 17 17 C 1.38239 * 120.35049 * 179.97438 * 16 15 14 18 18 C 1.38388 * 119.77151 * 0.20966 * 17 16 15 19 19 C 1.37692 * 119.97850 * 0.02562 * 18 17 16 20 20 C 1.38926 * 120.78131 * 359.57791 * 19 18 17 21 21 O 1.36134 * 111.21522 * 181.05996 * 20 19 18 22 22 C 1.43774 * 109.20701 * 340.64825 * 21 20 19 23 23 C 1.51649 * 132.17961 * 179.08721 * 19 18 17 24 24 H 1.08999 * 109.47004 * 59.99877 * 1 2 3 25 25 H 1.08999 * 109.47165 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47325 * 300.00188 * 1 2 3 27 27 H 1.09005 * 109.47143 * 295.00119 * 4 2 1 28 28 H 1.09004 * 109.47194 * 55.00368 * 4 2 1 29 29 H 0.96998 * 119.99719 * 179.97438 * 8 7 5 30 30 H 1.00896 * 111.00702 * 38.95442 * 13 2 1 31 31 H 1.09001 * 109.47030 * 60.00515 * 14 13 2 32 32 H 1.08996 * 109.47390 * 300.00760 * 14 13 2 33 33 H 1.08004 * 119.82317 * 0.02562 * 16 15 14 34 34 H 1.08001 * 120.11331 * 180.23686 * 17 16 15 35 35 H 1.08001 * 120.01030 * 180.02562 * 18 17 16 36 36 H 1.09003 * 110.74792 * 269.57572 * 22 21 20 37 37 H 1.08991 * 110.91492 * 146.29144 * 22 21 20 38 38 H 1.08994 * 110.93505 * 313.73646 * 23 19 18 39 39 H 1.08993 * 110.93494 * 77.37581 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1927 -2.3582 8 7 3.5764 -1.8369 -3.2999 9 14 6.0920 -1.0604 -2.4372 10 1 6.7008 -2.2130 -1.7258 11 1 6.5290 -1.0678 -3.8565 12 1 6.5261 0.2048 -1.7922 13 7 2.0196 -0.6926 1.1995 14 6 2.0824 0.2225 2.3469 15 6 2.5883 -0.5216 3.5558 16 6 1.6976 -0.9720 4.5083 17 6 2.1511 -1.6561 5.6207 18 6 3.5064 -1.8860 5.7807 19 6 4.3975 -1.4333 4.8338 20 6 3.9532 -0.7518 3.7076 21 8 4.9913 -0.4156 2.8937 22 6 6.2157 -0.4595 3.6461 23 6 5.9090 -1.5117 4.7381 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.7516 -1.7715 -1.2056 28 1 1.6054 -0.2617 -2.1370 29 1 4.0607 -2.2431 -4.0357 30 1 1.4495 -1.4980 1.4101 31 1 1.0870 0.6162 2.5526 32 1 2.7587 1.0461 2.1183 33 1 0.6404 -0.7898 4.3839 34 1 1.4502 -2.0103 6.3621 35 1 3.8649 -2.4204 6.6481 36 1 6.4286 0.5111 4.0942 37 1 7.0461 -0.7843 3.0194 38 1 6.3739 -1.2372 5.6849 39 1 6.2283 -2.5050 4.4231 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703143044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:29 Heat of formation + Delta-G solvation = -13.194212 kcal Electronic energy + Delta-G solvation = -19592.299346 eV Core-core repulsion = 16692.791053 eV Total energy + Delta-G solvation = -2899.508294 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.92071 -37.61186 -36.42545 -33.36588 -32.27209 -30.98135 -29.23396 -28.74529 -27.14499 -24.69675 -23.18465 -22.72503 -21.90863 -20.49935 -19.60325 -17.21085 -16.50412 -16.10418 -15.94566 -15.34737 -14.70241 -14.48254 -14.20023 -13.65783 -13.39773 -12.98007 -12.94144 -12.68142 -12.49531 -12.14510 -11.85209 -11.70902 -11.58754 -11.46329 -11.21604 -10.96937 -10.74534 -10.64987 -10.47117 -10.27803 -9.94555 -9.19082 -8.86888 -8.65281 -8.14886 -7.90752 -7.42054 -5.77190 -3.73147 1.37388 1.52564 3.46652 3.50825 3.51402 3.56716 3.78138 4.47274 4.65269 4.66686 4.87453 4.97814 5.03571 5.20374 5.31941 5.40665 5.52700 5.57803 5.60697 5.69210 5.76270 5.81222 5.84787 5.95063 6.04712 6.11545 6.28847 6.44402 6.48722 6.52915 6.65262 6.72742 6.78936 7.12408 7.41130 7.66463 7.80083 8.12759 8.19293 8.29283 8.72992 9.32956 9.87454 11.35321 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.006776 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.389859 B = 4131.109284 C = 5461.058344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.064 0.936 4 C 0.033 3.967 5 C -0.481 4.481 6 H 0.060 0.940 7 C 0.048 3.952 8 N -0.907 5.907 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.276 1.276 13 N -0.655 5.655 14 C 0.104 3.896 15 C -0.097 4.097 16 C -0.083 4.083 17 C -0.156 4.156 18 C -0.075 4.075 19 C -0.185 4.185 20 C 0.140 3.860 21 O -0.279 6.279 22 C 0.047 3.953 23 C -0.108 4.108 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.255 0.745 30 H 0.330 0.670 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.658 2.058 18.992 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.082 0.918 4 C -0.004 4.004 5 C -0.519 4.519 6 H 0.078 0.922 7 C -0.151 4.151 8 N -0.549 5.549 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.201 1.201 13 N -0.284 5.284 14 C -0.025 4.025 15 C -0.098 4.098 16 C -0.102 4.102 17 C -0.174 4.174 18 C -0.093 4.093 19 C -0.186 4.186 20 C 0.093 3.907 21 O -0.191 6.191 22 C -0.029 4.029 23 C -0.145 4.145 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.147 0.853 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.091 0.909 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.068 2.136 18.406 18.529 hybrid contribution 0.214 -0.087 0.251 0.341 sum 0.282 2.049 18.656 18.771 Atomic orbital electron populations 1.22565 0.99647 1.01140 1.00530 1.21808 0.89736 0.98191 0.92254 0.91802 1.19113 0.96310 0.95333 0.89639 1.21190 0.91884 1.32351 1.06500 0.92155 1.24994 0.97845 0.96113 0.96125 1.69970 1.35017 1.37455 1.12472 0.86633 0.86794 0.78285 0.76474 1.21037 1.21783 1.20081 1.60554 1.57750 1.08234 1.01910 1.20785 0.98151 0.95144 0.88416 1.19199 0.89576 1.03012 0.97978 1.20779 0.98848 0.97141 0.93384 1.20893 0.95023 1.02547 0.98960 1.20191 0.92460 0.98917 0.97749 1.20801 0.95665 1.04167 0.97960 1.19354 0.89456 0.93168 0.88713 1.87087 1.13893 1.84723 1.33412 1.23829 0.87336 0.98740 0.92962 1.21771 0.91998 1.00802 0.99933 0.92513 0.93066 0.94464 0.96592 0.96528 0.93517 0.85260 0.95574 0.90564 0.85652 0.85890 0.86319 0.90930 0.87684 0.89563 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 9.16 37.16 0.34 -2.78 16 2 C 0.09 1.89 2.53 -67.71 -0.17 1.71 16 3 H 0.06 1.38 7.80 -51.93 -0.40 0.98 16 4 C 0.03 0.89 4.65 -27.88 -0.13 0.76 16 5 C -0.48 -14.15 8.84 -34.44 -0.30 -14.46 16 6 H 0.06 1.80 7.74 -52.49 -0.41 1.39 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -28.41 13.29 55.43 0.74 -27.68 16 9 Si 0.89 23.04 29.54 -169.99 -5.02 18.02 16 10 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 N -0.65 -13.11 5.95 -107.99 -0.64 -13.76 16 14 C 0.10 1.77 5.57 -4.98 -0.03 1.74 16 15 C -0.10 -1.54 5.41 -104.35 -0.56 -2.10 16 16 C -0.08 -1.08 9.63 -39.68 -0.38 -1.47 16 17 C -0.16 -1.82 10.07 -39.53 -0.40 -2.22 16 18 C -0.07 -0.90 10.03 -39.73 -0.40 -1.30 16 19 C -0.19 -2.58 6.27 -104.10 -0.65 -3.23 16 20 C 0.14 2.34 6.76 -38.95 -0.26 2.08 16 21 O -0.28 -5.09 11.05 -20.17 -0.22 -5.31 16 22 C 0.05 0.60 8.01 38.06 0.30 0.91 16 23 C -0.11 -1.23 7.12 -26.51 -0.19 -1.42 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.33 6.27 8.46 -39.29 -0.33 5.93 16 31 H 0.03 0.39 7.29 -51.93 -0.38 0.01 16 32 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 33 H 0.13 1.37 8.02 -52.48 -0.42 0.95 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -33.40 325.04 -9.30 -42.70 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.11 Total: 1.57 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -2.93 Total: -20.44 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.09 Total: -41.43 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.22 Total: -5.31 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.40 -9.30 -42.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703143044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.501 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds