Wall clock time and date at job start Mon Mar 30 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46617 * 2 1 4 4 C 1.53002 * 109.47329 * 119.99807 * 2 1 3 5 5 C 1.50696 * 109.46919 * 185.00033 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 N 1.46901 * 109.47083 * 240.00204 * 2 1 3 14 14 C 1.46897 * 111.00370 * 84.99725 * 13 2 1 15 15 C 1.50694 * 109.47548 * 179.97438 * 14 13 2 16 16 C 1.37973 * 119.88376 * 259.72871 * 15 14 13 17 17 C 1.38242 * 120.35246 * 179.81595 * 16 15 14 18 18 C 1.38396 * 119.76633 * 0.39726 * 17 16 15 19 19 C 1.37694 * 119.97826 * 359.68101 * 18 17 16 20 20 C 1.38929 * 120.78983 * 0.30145 * 19 18 17 21 21 O 1.36130 * 111.23321 * 179.28961 * 20 19 18 22 22 C 1.43770 * 109.25786 * 18.86926 * 21 20 19 23 23 C 1.51641 * 132.17754 * 180.55418 * 19 18 17 24 24 H 1.09001 * 109.47337 * 60.00388 * 1 2 3 25 25 H 1.09005 * 109.47098 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47143 * 299.99750 * 1 2 3 27 27 H 1.09000 * 109.46497 * 65.00298 * 4 2 1 28 28 H 1.08999 * 109.46623 * 305.00362 * 4 2 1 29 29 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 30 30 H 1.00901 * 110.99772 * 208.95038 * 13 2 1 31 31 H 1.09006 * 109.47009 * 300.00297 * 14 13 2 32 32 H 1.08998 * 109.46949 * 59.99711 * 14 13 2 33 33 H 1.07997 * 119.82002 * 0.07463 * 16 15 14 34 34 H 1.07994 * 120.11430 * 180.12344 * 17 16 15 35 35 H 1.08000 * 120.00739 * 179.70642 * 18 17 16 36 36 H 1.08998 * 110.75087 * 90.64916 * 22 21 20 37 37 H 1.09000 * 110.74023 * 213.81042 * 22 21 20 38 38 H 1.08996 * 110.94525 * 46.11292 * 23 19 18 39 39 H 1.09009 * 110.96750 * 282.44264 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0861 0.5391 7 6 4.2305 -1.1934 2.3578 8 7 3.5770 -1.8428 3.2963 9 14 6.0922 -1.0621 2.4360 10 1 6.4855 0.3686 2.4956 11 1 6.5873 -1.7620 3.6486 12 1 6.6839 -1.6881 1.2263 13 7 2.0197 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5884 -0.5215 -3.5557 16 6 3.9090 -0.3980 -3.9359 17 6 4.3844 -1.0791 -5.0410 18 6 3.5282 -1.8824 -5.7738 19 6 2.2095 -2.0058 -5.3971 20 6 1.7201 -1.3267 -4.2883 21 8 0.3945 -1.5755 -4.1034 22 6 0.0323 -2.7702 -4.8163 23 6 1.0552 -2.8004 -5.9765 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7517 -1.7715 1.2055 28 1 1.6054 -0.2617 2.1369 29 1 2.6102 -1.9112 3.2555 30 1 2.9173 -1.1204 -1.0288 31 1 1.0870 0.6163 -2.5525 32 1 2.7587 1.0462 -2.1183 33 1 4.5757 0.2309 -3.3647 34 1 5.4192 -0.9812 -5.3339 35 1 3.8943 -2.4125 -6.6406 36 1 0.1438 -3.6483 -4.1803 37 1 -0.9863 -2.6983 -5.1976 38 1 1.3597 -3.8226 -6.2010 39 1 0.6523 -2.3123 -6.8640 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703143047.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:31 Heat of formation + Delta-G solvation = -23.322571 kcal Electronic energy + Delta-G solvation = -19477.382698 eV Core-core repulsion = 16577.435206 eV Total energy + Delta-G solvation = -2899.947492 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00321 -37.65083 -36.47751 -33.59803 -32.48523 -31.03669 -29.30851 -28.75508 -27.00230 -24.67331 -23.25326 -22.77096 -21.94304 -20.49239 -19.59614 -17.29758 -16.74668 -16.52482 -16.13197 -15.35512 -15.00069 -14.55769 -13.74006 -13.69882 -13.54197 -13.22288 -13.04336 -12.70553 -12.54049 -12.35243 -11.99938 -11.75297 -11.42569 -11.31566 -11.28762 -10.97817 -10.81235 -10.72816 -10.54450 -10.33263 -10.10717 -9.48784 -8.67398 -8.51474 -8.32080 -7.97765 -7.61476 -6.34600 -4.03800 1.35666 1.47551 3.37253 3.43691 3.45472 3.63984 3.78835 4.38124 4.55242 4.55328 4.84659 4.92093 5.00574 5.21083 5.27810 5.38839 5.42642 5.46719 5.56231 5.63966 5.68538 5.81583 5.94016 5.97150 6.18199 6.23535 6.29071 6.41982 6.50103 6.52059 6.61988 6.74811 6.85119 6.90215 7.30323 7.34433 7.45989 7.98443 8.18717 8.30166 8.45707 8.89614 9.68456 11.06038 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.005446 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.433442 B = 5140.606537 C = 5932.764105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.095 3.905 3 H 0.029 0.971 4 C 0.007 3.993 5 C -0.602 4.602 6 H 0.045 0.955 7 C 0.017 3.983 8 N -0.911 5.911 9 Si 1.066 2.934 10 H -0.289 1.289 11 H -0.282 1.282 12 H -0.288 1.288 13 N -0.674 5.674 14 C 0.103 3.897 15 C -0.093 4.093 16 C -0.079 4.079 17 C -0.151 4.151 18 C -0.075 4.075 19 C -0.186 4.186 20 C 0.132 3.868 21 O -0.293 6.293 22 C 0.051 3.949 23 C -0.108 4.108 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.016 0.984 28 H 0.012 0.988 29 H 0.270 0.730 30 H 0.355 0.645 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 0.083 -19.251 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.014 4.014 3 H 0.048 0.952 4 C -0.030 4.030 5 C -0.641 4.641 6 H 0.063 0.937 7 C -0.187 4.187 8 N -0.547 5.547 9 Si 0.894 3.106 10 H -0.216 1.216 11 H -0.208 1.208 12 H -0.214 1.214 13 N -0.308 5.308 14 C -0.026 4.026 15 C -0.094 4.094 16 C -0.098 4.098 17 C -0.169 4.169 18 C -0.094 4.094 19 C -0.186 4.186 20 C 0.086 3.914 21 O -0.206 6.206 22 C -0.024 4.024 23 C -0.145 4.145 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.035 0.965 28 H 0.030 0.970 29 H 0.080 0.920 30 H 0.176 0.824 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.871 -0.480 -18.365 18.595 hybrid contribution -0.509 0.829 -0.850 1.292 sum -3.381 0.349 -19.215 19.513 Atomic orbital electron populations 1.21794 0.96674 1.01315 0.99502 1.21457 0.93295 0.95735 0.90939 0.95249 1.19398 0.96502 0.95573 0.91523 1.21979 0.91928 1.38690 1.11466 0.93686 1.25784 1.06731 0.93438 0.92723 1.70766 1.10494 1.39327 1.34091 0.83589 0.74609 0.76175 0.76197 1.21583 1.20770 1.21427 1.60588 1.34752 1.31727 1.03740 1.20775 0.99857 0.93144 0.88871 1.19184 0.92024 1.01025 0.97154 1.20882 0.93764 0.98725 0.96407 1.20954 0.99693 0.99299 0.96952 1.20209 0.91378 0.98332 0.99450 1.20750 0.95694 1.04107 0.98088 1.19275 0.83782 0.95582 0.92762 1.86883 1.20797 1.42337 1.70617 1.23795 0.99271 0.87423 0.91949 1.21751 0.93196 1.00766 0.98749 0.94211 0.92734 0.93500 0.96542 0.97027 0.91996 0.82449 0.90986 0.95029 0.85263 0.85662 0.86228 0.90526 0.87986 0.89387 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.41 37.16 0.35 -2.23 16 2 C 0.10 2.08 2.59 -67.71 -0.18 1.91 16 3 H 0.03 0.66 7.80 -51.93 -0.40 0.25 16 4 C 0.01 0.19 3.88 -27.88 -0.11 0.08 16 5 C -0.60 -16.98 8.12 -34.44 -0.28 -17.26 16 6 H 0.04 1.24 7.49 -52.49 -0.39 0.85 16 7 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 8 N -0.91 -28.10 13.65 55.43 0.76 -27.35 16 9 Si 1.07 25.39 29.90 -169.99 -5.08 20.30 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.67 -13.97 6.30 -107.99 -0.68 -14.65 16 14 C 0.10 1.82 5.58 -4.98 -0.03 1.80 16 15 C -0.09 -1.52 5.41 -104.35 -0.56 -2.08 16 16 C -0.08 -1.14 9.63 -39.68 -0.38 -1.53 16 17 C -0.15 -1.88 10.07 -39.52 -0.40 -2.28 16 18 C -0.08 -0.91 10.03 -39.72 -0.40 -1.31 16 19 C -0.19 -2.47 6.27 -104.10 -0.65 -3.12 16 20 C 0.13 2.10 6.76 -38.95 -0.26 1.83 16 21 O -0.29 -4.62 11.05 -20.15 -0.22 -4.84 16 22 C 0.05 0.56 8.01 38.06 0.30 0.87 16 23 C -0.11 -1.08 7.12 -26.52 -0.19 -1.26 16 24 H 0.04 0.69 7.45 -51.93 -0.39 0.31 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.02 0.46 8.00 -51.93 -0.42 0.04 16 28 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 29 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 30 H 0.35 8.01 7.20 -39.29 -0.28 7.73 16 31 H 0.07 1.27 7.43 -51.93 -0.39 0.89 16 32 H 0.03 0.55 7.90 -51.93 -0.41 0.14 16 33 H 0.13 1.72 8.02 -52.49 -0.42 1.30 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -31.84 322.07 -9.25 -41.09 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.99 Total: 4.78 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -2.88 Total: -24.19 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.08 Total: -42.00 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.22 Total: -4.84 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.84 -9.25 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703143047.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.766 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds