Wall clock time and date at job start Mon Mar 30 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46617 * 2 1 4 4 C 1.53002 * 109.47329 * 119.99807 * 2 1 3 5 5 C 1.50696 * 109.46919 * 185.00033 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 N 1.46901 * 109.47083 * 240.00204 * 2 1 3 14 14 C 1.46897 * 111.00370 * 84.99725 * 13 2 1 15 15 C 1.50694 * 109.47548 * 179.97438 * 14 13 2 16 16 C 1.37973 * 119.88376 * 259.72871 * 15 14 13 17 17 C 1.38242 * 120.35246 * 179.81595 * 16 15 14 18 18 C 1.38396 * 119.76633 * 0.39726 * 17 16 15 19 19 C 1.37694 * 119.97826 * 359.68101 * 18 17 16 20 20 C 1.38929 * 120.78983 * 0.30145 * 19 18 17 21 21 O 1.36130 * 111.23321 * 179.28961 * 20 19 18 22 22 C 1.43770 * 109.25786 * 18.86926 * 21 20 19 23 23 C 1.51641 * 132.17754 * 180.55418 * 19 18 17 24 24 H 1.09001 * 109.47337 * 60.00388 * 1 2 3 25 25 H 1.09005 * 109.47098 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47143 * 299.99750 * 1 2 3 27 27 H 1.09000 * 109.46497 * 65.00298 * 4 2 1 28 28 H 1.08999 * 109.46623 * 305.00362 * 4 2 1 29 29 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 30 30 H 1.00901 * 110.99772 * 208.95038 * 13 2 1 31 31 H 1.09006 * 109.47009 * 300.00297 * 14 13 2 32 32 H 1.08998 * 109.46949 * 59.99711 * 14 13 2 33 33 H 1.07997 * 119.82002 * 0.07463 * 16 15 14 34 34 H 1.07994 * 120.11430 * 180.12344 * 17 16 15 35 35 H 1.08000 * 120.00739 * 179.70642 * 18 17 16 36 36 H 1.08998 * 110.75087 * 90.64916 * 22 21 20 37 37 H 1.09000 * 110.74023 * 213.81042 * 22 21 20 38 38 H 1.08996 * 110.94525 * 46.11292 * 23 19 18 39 39 H 1.09009 * 110.96750 * 282.44264 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0861 0.5391 7 6 4.2305 -1.1934 2.3578 8 7 3.5770 -1.8428 3.2963 9 14 6.0922 -1.0621 2.4360 10 1 6.4855 0.3686 2.4956 11 1 6.5873 -1.7620 3.6486 12 1 6.6839 -1.6881 1.2263 13 7 2.0197 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5884 -0.5215 -3.5557 16 6 3.9090 -0.3980 -3.9359 17 6 4.3844 -1.0791 -5.0410 18 6 3.5282 -1.8824 -5.7738 19 6 2.2095 -2.0058 -5.3971 20 6 1.7201 -1.3267 -4.2883 21 8 0.3945 -1.5755 -4.1034 22 6 0.0323 -2.7702 -4.8163 23 6 1.0552 -2.8004 -5.9765 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7517 -1.7715 1.2055 28 1 1.6054 -0.2617 2.1369 29 1 2.6102 -1.9112 3.2555 30 1 2.9173 -1.1204 -1.0288 31 1 1.0870 0.6163 -2.5525 32 1 2.7587 1.0462 -2.1183 33 1 4.5757 0.2309 -3.3647 34 1 5.4192 -0.9812 -5.3339 35 1 3.8943 -2.4125 -6.6406 36 1 0.1438 -3.6483 -4.1803 37 1 -0.9863 -2.6983 -5.1976 38 1 1.3597 -3.8226 -6.2010 39 1 0.6523 -2.3123 -6.8640 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703143047.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:31 Heat of formation + Delta-G solvation = -43.161417 kcal Electronic energy + Delta-G solvation = -19478.242975 eV Core-core repulsion = 16577.435206 eV Total energy + Delta-G solvation = -2900.807769 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.00480 -38.90570 -37.98590 -35.35394 -34.01167 -32.29495 -30.42068 -29.95623 -28.98679 -26.09013 -24.91640 -24.10723 -22.97499 -21.59563 -21.40132 -18.91273 -18.30483 -17.63723 -17.11831 -16.59168 -16.44401 -16.07554 -15.63589 -15.14168 -14.84134 -14.47898 -14.23074 -13.97304 -13.82969 -13.70265 -13.32708 -13.18672 -13.01004 -12.78240 -12.65341 -12.51779 -12.44701 -12.18174 -11.96156 -11.74572 -11.66049 -11.36785 -10.66099 -10.55590 -9.73057 -9.27170 -9.01569 -8.68099 -6.38144 0.32123 0.43086 1.51210 1.59690 1.78454 2.41460 2.56162 2.74299 3.14918 3.48308 3.53307 3.66551 3.90082 4.06000 4.13467 4.18565 4.32358 4.33905 4.45102 4.49553 4.56907 4.59051 4.64916 4.72822 4.86413 4.89579 4.92274 5.03262 5.12054 5.14696 5.24730 5.37717 5.44219 5.47850 5.56867 5.75874 5.95710 6.16684 6.24336 6.32484 6.49627 6.59069 7.43438 8.72564 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.005446 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.433442 B = 5140.606537 C = 5932.764105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.101 3.899 3 H 0.024 0.976 4 C 0.013 3.987 5 C -0.609 4.609 6 H 0.049 0.951 7 C -0.036 4.036 8 N -0.937 5.937 9 Si 1.116 2.884 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.676 5.676 14 C 0.110 3.890 15 C -0.122 4.122 16 C -0.093 4.093 17 C -0.148 4.148 18 C -0.073 4.073 19 C -0.191 4.191 20 C 0.105 3.895 21 O -0.324 6.324 22 C 0.041 3.959 23 C -0.099 4.099 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.055 0.945 27 H -0.009 1.009 28 H -0.007 1.007 29 H 0.255 0.745 30 H 0.341 0.659 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.133 0.867 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.308 -0.116 -21.852 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.008 4.008 3 H 0.042 0.958 4 C -0.024 4.024 5 C -0.646 4.646 6 H 0.067 0.933 7 C -0.234 4.234 8 N -0.574 5.574 9 Si 0.937 3.063 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.309 5.309 14 C -0.019 4.019 15 C -0.123 4.123 16 C -0.112 4.112 17 C -0.166 4.166 18 C -0.091 4.091 19 C -0.191 4.191 20 C 0.059 3.941 21 O -0.238 6.238 22 C -0.033 4.033 23 C -0.135 4.135 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.009 0.991 28 H 0.011 0.989 29 H 0.064 0.936 30 H 0.160 0.840 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.150 0.850 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.090 0.910 37 H 0.147 0.853 38 H 0.129 0.871 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.821 -0.666 -20.995 21.085 hybrid contribution -0.896 0.874 -0.106 1.256 sum -2.717 0.208 -21.101 21.277 Atomic orbital electron populations 1.21692 0.94474 1.01294 1.00876 1.21324 0.95043 0.94684 0.89773 0.95761 1.19289 0.95861 0.94325 0.92953 1.22306 0.92998 1.38041 1.11302 0.93283 1.27367 1.11227 0.92545 0.92247 1.70906 1.09700 1.41350 1.35468 0.82961 0.69235 0.77341 0.76795 1.19540 1.21026 1.19275 1.60627 1.33798 1.32500 1.03949 1.20707 0.99813 0.92815 0.88548 1.19198 0.93286 1.02563 0.97249 1.21052 0.93151 0.99482 0.97495 1.21330 1.01183 0.98245 0.95873 1.20658 0.90770 0.97631 1.00024 1.21222 0.96987 1.03610 0.97316 1.19547 0.84072 0.96460 0.94040 1.86829 1.20999 1.44164 1.71796 1.24104 1.01180 0.85890 0.92176 1.21821 0.91409 1.01730 0.98584 0.92352 0.93428 0.92559 0.99051 0.98914 0.93604 0.84000 0.91286 0.95029 0.84951 0.82818 0.82799 0.90964 0.85331 0.87132 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.41 71.98 0.68 -4.15 16 2 C 0.10 4.53 2.59 44.92 0.12 4.65 16 3 H 0.02 1.11 7.80 -2.39 -0.02 1.09 16 4 C 0.01 0.70 3.88 29.85 0.12 0.82 16 5 C -0.61 -34.88 8.12 25.60 0.21 -34.68 16 6 H 0.05 2.72 7.49 -2.91 -0.02 2.70 16 7 C -0.04 -2.12 5.46 84.66 0.46 -1.66 16 8 N -0.94 -59.15 13.65 21.45 0.29 -58.85 16 9 Si 1.12 50.70 29.90 68.60 2.05 52.75 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 13 N -0.68 -28.66 6.30 -495.58 -3.12 -31.78 16 14 C 0.11 3.96 5.58 85.56 0.48 4.44 16 15 C -0.12 -3.99 5.41 -19.69 -0.11 -4.10 16 16 C -0.09 -2.61 9.63 22.21 0.21 -2.40 16 17 C -0.15 -3.33 10.07 22.31 0.22 -3.10 16 18 C -0.07 -1.53 10.03 22.18 0.22 -1.31 16 19 C -0.19 -4.65 6.27 -19.53 -0.12 -4.77 16 20 C 0.10 3.26 6.76 22.68 0.15 3.42 16 21 O -0.32 -10.10 11.05 -95.03 -1.05 -11.15 16 22 C 0.04 0.84 8.01 72.56 0.58 1.42 16 23 C -0.10 -1.68 7.12 30.73 0.22 -1.46 16 24 H 0.06 2.01 7.45 -2.39 -0.02 2.00 16 25 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 27 H -0.01 -0.52 8.00 -2.39 -0.02 -0.54 16 28 H -0.01 -0.42 8.01 -2.39 -0.02 -0.44 16 29 H 0.25 16.38 7.22 -92.71 -0.67 15.71 16 30 H 0.34 15.84 7.20 -89.69 -0.65 15.19 16 31 H 0.07 2.48 7.43 -2.38 -0.02 2.46 16 32 H 0.03 1.12 7.90 -2.39 -0.02 1.10 16 33 H 0.13 3.46 8.02 -2.91 -0.02 3.44 16 34 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 35 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -70.27 322.07 2.10 -68.17 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.49 Total: 23.74 kcal Atomic # 6 Polarization: -46.32 SS G_CDS: 3.44 Total: -42.88 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -2.83 Total: -90.63 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -1.05 Total: -11.15 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.75 kcal Total: -70.27 2.10 -68.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703143047.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.012 kcal (2) G-P(sol) polarization free energy of solvation -70.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds