Wall clock time and date at job start Mon Mar 30 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99893 * 2 1 4 4 C 1.53775 * 113.61511 * 209.99360 * 3 2 1 5 5 C 1.53774 * 87.08637 * 219.93564 * 4 3 2 6 6 C 1.53001 * 113.61710 * 139.98020 * 5 4 3 7 7 N 1.46504 * 109.46973 * 176.53282 * 6 5 4 8 8 C 1.38860 * 119.99829 * 180.02562 * 7 6 5 9 9 C 1.39565 * 119.84009 * 359.45184 * 8 7 6 10 10 C 1.36341 * 120.16049 * 179.71795 * 9 8 7 11 11 C 1.40890 * 119.83251 * 0.54998 * 10 9 8 12 12 C 1.41140 * 120.15198 * 179.69894 * 11 10 9 13 13 H 1.08005 * 119.99606 * 204.62747 * 12 11 10 14 14 C 1.39862 * 120.00226 * 24.62874 * 12 11 10 15 15 N 1.30901 * 119.99854 * 17.96331 * 14 12 11 16 16 Si 1.86804 * 119.99997 * 197.96256 * 14 12 11 17 17 H 1.48495 * 109.46888 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46975 * 119.99856 * 16 14 12 19 19 H 1.48500 * 109.47191 * 239.99949 * 16 14 12 20 20 C 1.40880 * 119.69252 * 359.72484 * 11 10 9 21 21 C 1.36348 * 119.83400 * 359.97438 * 20 11 10 22 22 C 1.53785 * 87.17277 * 25.39264 * 5 4 3 23 23 H 1.08991 * 109.47905 * 300.00499 * 1 2 3 24 24 H 1.09005 * 109.46929 * 60.00471 * 1 2 3 25 25 H 1.09004 * 109.47358 * 179.97438 * 1 2 3 26 26 H 1.09000 * 112.85125 * 341.19137 * 3 2 1 27 27 H 1.09004 * 113.61503 * 105.38490 * 4 3 2 28 28 H 1.09005 * 113.61746 * 334.48628 * 4 3 2 29 29 H 1.09000 * 113.61762 * 270.80000 * 5 4 3 30 30 H 1.08999 * 109.47146 * 56.53398 * 6 5 4 31 31 H 1.08997 * 109.47203 * 296.53305 * 6 5 4 32 32 H 0.96995 * 119.99851 * 359.72153 * 7 6 5 33 33 H 1.08007 * 119.92388 * 359.97438 * 9 8 7 34 34 H 1.08004 * 120.08615 * 180.27602 * 10 9 8 35 35 H 0.96999 * 119.99971 * 180.02562 * 15 14 12 36 36 H 1.07993 * 120.08536 * 179.97438 * 20 11 10 37 37 H 1.08003 * 119.91767 * 179.97438 * 21 20 11 38 38 H 1.08997 * 113.61420 * 89.15395 * 22 5 4 39 39 H 1.09000 * 113.61652 * 220.06452 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3755 1.3719 -0.7044 5 6 3.8219 2.3200 0.4211 6 6 5.2536 2.0714 0.9001 7 7 5.6117 3.0719 1.9086 8 6 6.8712 3.0488 2.4928 9 6 7.7894 2.0641 2.1251 10 6 9.0298 2.0387 2.6903 11 6 9.3798 3.0028 3.6563 12 6 10.6598 2.9790 4.2503 13 1 10.8107 3.4179 5.2256 14 6 11.7328 2.3870 3.5762 15 7 11.6584 2.1744 2.2867 16 14 13.2720 1.8999 4.5160 17 1 13.1053 2.2437 5.9509 18 1 13.4928 0.4377 4.3802 19 1 14.4410 2.6305 3.9639 20 6 8.4458 3.9903 4.0268 21 6 7.2111 4.0072 3.4487 22 6 2.7529 1.6534 1.3030 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.3137 2.0789 -0.3238 27 1 3.3382 1.8458 -1.6853 28 1 3.9095 0.4217 -0.7123 29 1 3.6221 3.3709 0.2118 30 1 5.9377 2.1466 0.0548 31 1 5.3230 1.0749 1.3362 32 1 4.9706 3.7530 2.1650 33 1 7.5181 1.3228 1.3879 34 1 9.7409 1.2788 2.4015 35 1 12.4024 1.7635 1.8192 36 1 8.7072 4.7321 4.7668 37 1 6.4939 4.7634 3.7320 38 1 3.1162 0.7802 1.8448 39 1 2.2135 2.3541 1.9403 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703823060.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:00 Heat of formation + Delta-G solvation = -7.198254 kcal Electronic energy + Delta-G solvation = -18583.535854 eV Core-core repulsion = 15684.287564 eV Total energy + Delta-G solvation = -2899.248289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.71344 -37.86449 -36.53561 -34.56580 -32.75823 -29.42891 -29.22948 -27.40536 -26.39428 -25.77380 -23.98954 -22.44233 -20.93484 -19.86805 -19.60089 -17.16705 -16.97286 -16.11867 -15.55632 -15.34873 -15.19225 -14.87490 -14.35152 -13.79329 -13.55491 -12.89296 -12.60328 -12.52163 -12.43322 -12.17962 -11.95627 -11.71310 -11.50045 -11.29301 -11.10816 -10.98556 -10.75066 -10.62545 -10.45204 -10.30329 -9.65447 -9.62812 -9.24710 -9.17297 -8.47481 -7.45030 -6.60513 -6.33831 -3.99209 2.93732 3.14037 3.17916 3.23347 3.38806 3.59654 4.08585 4.20530 4.47256 4.58066 4.67040 4.79602 4.85557 5.01555 5.12741 5.18866 5.38549 5.44472 5.63859 5.68090 5.81689 5.85314 5.92388 6.03544 6.18721 6.31569 6.35361 6.38736 6.98061 6.98576 7.04690 7.24427 7.39942 7.60051 7.73411 7.89003 8.19581 8.33793 8.54229 8.75842 8.85016 9.10112 9.19649 10.41188 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.043641 B = 0.003241 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.448029 B = 8637.505416 C = 8937.116845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.058 3.942 4 C -0.127 4.127 5 C -0.119 4.119 6 C 0.152 3.848 7 N -0.761 5.761 8 C 0.093 3.907 9 C -0.164 4.164 10 C -0.124 4.124 11 C 0.073 3.927 12 C -0.467 4.467 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.808 5.808 16 Si 0.902 3.098 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.277 1.277 20 C -0.187 4.187 21 C -0.160 4.160 22 C -0.147 4.147 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.383 0.617 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.275 0.725 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.734 -2.004 -5.426 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C 0.000 4.000 4 C -0.165 4.165 5 C -0.137 4.137 6 C 0.026 3.974 7 N -0.397 5.397 8 C -0.004 4.004 9 C -0.186 4.186 10 C -0.144 4.144 11 C 0.070 3.930 12 C -0.498 4.498 13 H 0.091 0.909 14 C -0.141 4.141 15 N -0.436 5.436 16 Si 0.727 3.273 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.203 1.203 20 C -0.207 4.207 21 C -0.182 4.182 22 C -0.184 4.184 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.215 0.785 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.435 -2.423 -5.730 17.573 hybrid contribution 0.301 0.311 0.379 0.575 sum -16.133 -2.113 -5.351 17.128 Atomic orbital electron populations 1.22764 0.81530 1.02603 0.99758 1.87964 1.19362 1.27682 1.94602 1.23817 0.93838 0.84883 0.97413 1.23201 0.95036 1.00509 0.97757 1.22510 0.95188 0.99235 0.96802 1.20934 0.92536 0.92525 0.91357 1.43840 1.14027 1.35001 1.46817 1.17360 0.85788 0.98826 0.98424 1.20102 0.95108 0.99661 1.03766 1.20940 0.94269 0.99607 0.99577 1.17500 0.92732 0.90322 0.92436 1.19389 0.92902 1.33816 1.03683 0.90948 1.25793 1.00038 0.93835 0.94426 1.69867 1.32062 1.33669 1.07960 0.86376 0.81108 0.78842 0.80980 1.18659 1.19986 1.20309 1.20542 0.94923 1.00438 1.04816 1.19801 0.97538 0.99845 1.01054 1.23589 0.97129 1.01030 0.96671 0.94123 0.94214 0.89832 0.89755 0.90913 0.88781 0.88860 0.93387 0.93291 0.78501 0.89420 0.86399 0.91421 0.89096 0.89677 0.88939 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.33 16 2 O -0.38 -4.25 10.72 -35.23 -0.38 -4.63 16 3 C 0.06 0.58 4.31 -25.83 -0.11 0.47 16 4 C -0.13 -1.32 7.47 -25.93 -0.19 -1.51 16 5 C -0.12 -1.35 3.75 -89.81 -0.34 -1.68 16 6 C 0.15 2.29 4.71 -4.04 -0.02 2.27 16 7 N -0.76 -13.41 5.70 -58.50 -0.33 -13.74 16 8 C 0.09 2.07 6.67 -83.69 -0.56 1.51 16 9 C -0.16 -3.95 9.23 -39.77 -0.37 -4.32 16 10 C -0.12 -3.32 8.64 -39.26 -0.34 -3.66 16 11 C 0.07 2.01 5.57 -106.79 -0.60 1.42 16 12 C -0.47 -12.89 9.03 -37.87 -0.34 -13.24 16 13 H 0.07 1.94 7.91 -52.48 -0.41 1.52 16 14 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 15 N -0.81 -21.79 10.96 55.54 0.61 -21.19 16 16 Si 0.90 19.51 29.60 -169.99 -5.03 14.48 16 17 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 C -0.19 -4.73 9.74 -39.26 -0.38 -5.11 16 21 C -0.16 -3.67 9.82 -39.77 -0.39 -4.06 16 22 C -0.15 -1.60 7.48 -25.82 -0.19 -1.80 16 23 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.77 7.95 -51.93 -0.41 0.36 16 31 H 0.05 0.78 7.64 -51.93 -0.40 0.39 16 32 H 0.38 5.97 8.47 -40.82 -0.35 5.63 16 33 H 0.09 1.93 6.68 -52.48 -0.35 1.58 16 34 H 0.12 3.27 6.16 -52.48 -0.32 2.95 16 35 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 36 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 37 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.09 1.15 7.92 -51.93 -0.41 0.74 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 322.66 15.07 4.86 4.86 Total: -1.00 -29.38 322.66 -9.09 -38.48 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.00 Total: 8.25 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -2.82 Total: -26.52 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.28 Total: -34.93 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.38 Total: -4.63 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.38 -9.09 -38.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703823060.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.278 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds