Wall clock time and date at job start Mon Mar 30 2020 06:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99893 * 2 1 4 4 C 1.53775 * 113.61511 * 209.99360 * 3 2 1 5 5 C 1.53774 * 87.08637 * 219.93564 * 4 3 2 6 6 C 1.53001 * 113.61710 * 139.98020 * 5 4 3 7 7 N 1.46504 * 109.46973 * 176.53282 * 6 5 4 8 8 C 1.38860 * 119.99829 * 180.02562 * 7 6 5 9 9 C 1.39565 * 119.84009 * 359.45184 * 8 7 6 10 10 C 1.36341 * 120.16049 * 179.71795 * 9 8 7 11 11 C 1.40890 * 119.83251 * 0.54998 * 10 9 8 12 12 C 1.41140 * 120.15198 * 179.69894 * 11 10 9 13 13 H 1.08005 * 119.99606 * 204.62747 * 12 11 10 14 14 C 1.39862 * 120.00226 * 24.62874 * 12 11 10 15 15 N 1.30901 * 119.99854 * 17.96331 * 14 12 11 16 16 Si 1.86804 * 119.99997 * 197.96256 * 14 12 11 17 17 H 1.48495 * 109.46888 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46975 * 119.99856 * 16 14 12 19 19 H 1.48500 * 109.47191 * 239.99949 * 16 14 12 20 20 C 1.40880 * 119.69252 * 359.72484 * 11 10 9 21 21 C 1.36348 * 119.83400 * 359.97438 * 20 11 10 22 22 C 1.53785 * 87.17277 * 25.39264 * 5 4 3 23 23 H 1.08991 * 109.47905 * 300.00499 * 1 2 3 24 24 H 1.09005 * 109.46929 * 60.00471 * 1 2 3 25 25 H 1.09004 * 109.47358 * 179.97438 * 1 2 3 26 26 H 1.09000 * 112.85125 * 341.19137 * 3 2 1 27 27 H 1.09004 * 113.61503 * 105.38490 * 4 3 2 28 28 H 1.09005 * 113.61746 * 334.48628 * 4 3 2 29 29 H 1.09000 * 113.61762 * 270.80000 * 5 4 3 30 30 H 1.08999 * 109.47146 * 56.53398 * 6 5 4 31 31 H 1.08997 * 109.47203 * 296.53305 * 6 5 4 32 32 H 0.96995 * 119.99851 * 359.72153 * 7 6 5 33 33 H 1.08007 * 119.92388 * 359.97438 * 9 8 7 34 34 H 1.08004 * 120.08615 * 180.27602 * 10 9 8 35 35 H 0.96999 * 119.99971 * 180.02562 * 15 14 12 36 36 H 1.07993 * 120.08536 * 179.97438 * 20 11 10 37 37 H 1.08003 * 119.91767 * 179.97438 * 21 20 11 38 38 H 1.08997 * 113.61420 * 89.15395 * 22 5 4 39 39 H 1.09000 * 113.61652 * 220.06452 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3755 1.3719 -0.7044 5 6 3.8219 2.3200 0.4211 6 6 5.2536 2.0714 0.9001 7 7 5.6117 3.0719 1.9086 8 6 6.8712 3.0488 2.4928 9 6 7.7894 2.0641 2.1251 10 6 9.0298 2.0387 2.6903 11 6 9.3798 3.0028 3.6563 12 6 10.6598 2.9790 4.2503 13 1 10.8107 3.4179 5.2256 14 6 11.7328 2.3870 3.5762 15 7 11.6584 2.1744 2.2867 16 14 13.2720 1.8999 4.5160 17 1 13.1053 2.2437 5.9509 18 1 13.4928 0.4377 4.3802 19 1 14.4410 2.6305 3.9639 20 6 8.4458 3.9903 4.0268 21 6 7.2111 4.0072 3.4487 22 6 2.7529 1.6534 1.3030 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.3137 2.0789 -0.3238 27 1 3.3382 1.8458 -1.6853 28 1 3.9095 0.4217 -0.7123 29 1 3.6221 3.3709 0.2118 30 1 5.9377 2.1466 0.0548 31 1 5.3230 1.0749 1.3362 32 1 4.9706 3.7530 2.1650 33 1 7.5181 1.3228 1.3879 34 1 9.7409 1.2788 2.4015 35 1 12.4024 1.7635 1.8192 36 1 8.7072 4.7321 4.7668 37 1 6.4939 4.7634 3.7320 38 1 3.1162 0.7802 1.8448 39 1 2.2135 2.3541 1.9403 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703823060.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:59 Heat of formation + Delta-G solvation = -24.082309 kcal Electronic energy + Delta-G solvation = -18584.268001 eV Core-core repulsion = 15684.287564 eV Total energy + Delta-G solvation = -2899.980437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.61967 -39.60775 -37.53785 -36.18039 -34.53408 -31.34861 -30.93664 -28.61723 -27.35285 -26.65622 -25.71374 -23.71658 -22.64320 -21.62877 -20.54091 -19.14762 -18.01040 -17.45816 -16.83335 -16.54673 -16.33733 -16.07162 -15.70720 -15.40376 -14.73424 -14.54879 -14.31944 -13.93906 -13.56855 -13.43084 -13.38311 -13.19885 -12.77739 -12.74008 -12.62678 -12.33035 -12.26440 -11.82332 -11.59290 -11.55170 -11.32808 -11.16296 -11.01210 -10.38837 -10.26523 -9.40271 -8.54549 -8.15090 -5.99959 1.10580 1.18735 1.40299 1.54783 1.58508 2.27874 2.80087 2.85028 2.99932 3.60665 3.69082 3.85317 3.89465 3.91567 4.22833 4.40654 4.47463 4.51782 4.53972 4.58557 4.76699 4.80790 4.86520 4.86828 4.90685 5.02717 5.07224 5.15173 5.21926 5.28506 5.43015 5.46604 5.69602 5.81274 5.97394 6.19676 6.35429 6.39733 6.67701 6.87972 7.09040 7.16752 7.35106 8.49095 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.043641 B = 0.003241 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.448029 B = 8637.505416 C = 8937.116845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.405 6.405 3 C 0.064 3.936 4 C -0.127 4.127 5 C -0.109 4.109 6 C 0.149 3.851 7 N -0.749 5.749 8 C 0.111 3.889 9 C -0.177 4.177 10 C -0.144 4.144 11 C 0.034 3.966 12 C -0.505 4.505 13 H 0.068 0.932 14 C 0.030 3.970 15 N -0.842 5.842 16 Si 0.977 3.023 17 H -0.260 1.260 18 H -0.267 1.267 19 H -0.268 1.268 20 C -0.196 4.196 21 C -0.165 4.165 22 C -0.148 4.148 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.398 0.602 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.282 0.718 36 H 0.098 0.902 37 H 0.120 0.880 38 H 0.071 0.929 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.587 -1.401 -5.843 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.324 6.324 3 C 0.006 3.994 4 C -0.165 4.165 5 C -0.128 4.128 6 C 0.024 3.976 7 N -0.384 5.384 8 C 0.012 3.988 9 C -0.199 4.199 10 C -0.164 4.164 11 C 0.031 3.969 12 C -0.536 4.536 13 H 0.086 0.914 14 C -0.182 4.182 15 N -0.471 5.471 16 Si 0.799 3.201 17 H -0.184 1.184 18 H -0.192 1.192 19 H -0.193 1.193 20 C -0.216 4.216 21 C -0.187 4.187 22 C -0.186 4.186 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.127 0.873 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.130 0.870 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.232 0.768 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.137 0.863 38 H 0.090 0.910 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.345 -1.811 -6.162 19.437 hybrid contribution 0.672 0.134 0.443 0.816 sum -17.673 -1.678 -5.719 18.651 Atomic orbital electron populations 1.22957 0.79853 1.03617 1.00827 1.87929 1.21337 1.28448 1.94678 1.23836 0.94000 0.85214 0.96311 1.23195 0.95288 0.99702 0.98347 1.22445 0.92459 1.00510 0.97370 1.21051 0.95010 0.91267 0.90226 1.43879 1.12460 1.35640 1.46410 1.17479 0.86990 0.97197 0.97180 1.20246 0.94726 1.00787 1.04167 1.20863 0.95180 0.99689 1.00713 1.17831 0.93718 0.91633 0.93747 1.19610 0.93984 1.36017 1.04004 0.91390 1.26634 1.03130 0.93234 0.95174 1.69929 1.33428 1.34366 1.09336 0.85240 0.76870 0.78648 0.79360 1.18404 1.19200 1.19293 1.20776 0.95651 1.00087 1.05064 1.20112 0.97358 1.00625 1.00623 1.23559 0.97286 1.00483 0.97263 0.93386 0.92734 0.89027 0.87314 0.89221 0.90169 0.87045 0.94181 0.94452 0.76779 0.88082 0.88406 0.90794 0.88388 0.86251 0.90998 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.85 113.37 1.23 1.54 16 2 O -0.40 -8.35 10.72 -148.98 -1.60 -9.95 16 3 C 0.06 1.11 4.31 31.18 0.13 1.24 16 4 C -0.13 -2.36 7.47 31.12 0.23 -2.13 16 5 C -0.11 -2.20 3.75 -10.27 -0.04 -2.23 16 6 C 0.15 4.27 4.71 86.38 0.41 4.68 16 7 N -0.75 -24.69 5.70 -338.99 -1.93 -26.62 16 8 C 0.11 4.82 6.67 38.67 0.26 5.08 16 9 C -0.18 -8.59 9.23 22.15 0.20 -8.39 16 10 C -0.14 -8.02 8.64 22.48 0.19 -7.83 16 11 C 0.03 1.91 5.57 -21.27 -0.12 1.79 16 12 C -0.50 -28.92 9.03 23.38 0.21 -28.71 16 13 H 0.07 3.78 7.91 -2.91 -0.02 3.75 16 14 C 0.03 1.61 5.13 85.22 0.44 2.05 16 15 N -0.84 -46.90 10.96 21.81 0.24 -46.66 16 16 Si 0.98 40.84 29.60 68.60 2.03 42.87 16 17 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 19 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 20 C -0.20 -9.96 9.74 22.48 0.22 -9.74 16 21 C -0.16 -7.32 9.82 22.15 0.22 -7.11 16 22 C -0.15 -2.91 7.48 31.18 0.23 -2.68 16 23 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.11 1.37 7.87 -2.39 -0.02 1.35 16 27 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.08 1.71 8.10 -2.38 -0.02 1.70 16 29 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.23 7.95 -2.39 -0.02 1.22 16 31 H 0.04 1.17 7.64 -2.39 -0.02 1.15 16 32 H 0.40 11.05 8.47 -92.71 -0.79 10.26 16 33 H 0.10 4.51 6.68 -2.91 -0.02 4.49 16 34 H 0.10 5.72 6.16 -2.91 -0.02 5.71 16 35 H 0.28 14.23 8.30 -92.71 -0.77 13.46 16 36 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 37 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.07 1.72 7.92 -2.39 -0.02 1.70 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -65.02 322.66 2.81 -62.21 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.25 Total: 30.58 kcal Atomic # 6 Polarization: -56.26 SS G_CDS: 3.82 Total: -52.43 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.69 Total: -73.29 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -1.60 Total: -9.95 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -65.02 2.81 -62.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703823060.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.132 kcal (2) G-P(sol) polarization free energy of solvation -65.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds