Wall clock time and date at job start Mon Mar 30 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47525 * 2 1 4 4 C 1.50696 * 109.47549 * 239.99065 * 2 1 3 5 5 H 1.08001 * 120.00309 * 240.00894 * 4 2 1 6 6 C 1.37881 * 119.99555 * 60.00274 * 4 2 1 7 7 N 1.31513 * 120.00309 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99649 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47410 * 60.00335 * 8 6 4 10 10 H 1.48506 * 109.47124 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47274 * 300.00124 * 8 6 4 12 12 N 1.46901 * 109.46636 * 119.99322 * 2 1 3 13 13 C 1.46908 * 111.00155 * 275.00066 * 12 2 1 14 14 C 1.52997 * 109.46868 * 180.02562 * 13 12 2 15 15 H 1.08998 * 109.79770 * 59.49829 * 14 13 12 16 16 C 1.52976 * 109.63175 * 179.97438 * 14 13 12 17 17 C 1.50740 * 109.76291 * 168.91990 * 16 14 13 18 18 C 1.38594 * 118.76499 * 163.01731 * 17 16 14 19 19 C 1.38066 * 120.27781 * 179.73247 * 18 17 16 20 20 C 1.38258 * 119.86410 * 359.93024 * 19 18 17 21 21 C 1.38055 * 119.89382 * 0.11132 * 20 19 18 22 22 C 1.37907 * 121.35392 * 342.86284 * 17 16 14 23 23 C 1.50658 * 121.49964 * 0.70317 * 22 17 16 24 24 O 1.42725 * 110.26303 * 343.80237 * 23 22 17 25 25 H 1.08996 * 109.47276 * 300.00952 * 1 2 3 26 26 H 1.09005 * 109.46698 * 60.00580 * 1 2 3 27 27 H 1.08996 * 109.47028 * 179.97438 * 1 2 3 28 28 H 0.96998 * 120.00395 * 179.97438 * 7 6 4 29 29 H 1.00906 * 111.00370 * 151.04921 * 12 2 1 30 30 H 1.08997 * 109.46794 * 60.00341 * 13 12 2 31 31 H 1.08991 * 109.46871 * 299.99983 * 13 12 2 32 32 H 1.09005 * 109.41906 * 48.83322 * 16 14 13 33 33 H 1.08995 * 109.41957 * 289.01029 * 16 14 13 34 34 H 1.08007 * 119.86288 * 359.70722 * 18 17 16 35 35 H 1.08007 * 120.07323 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.05522 * 180.13749 * 20 19 18 37 37 H 1.08010 * 119.84843 * 179.75367 * 21 20 19 38 38 H 1.08995 * 109.34187 * 223.56255 * 23 22 17 39 39 H 1.08997 * 109.33957 * 104.04553 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2396 -2.4826 7 7 0.9437 0.8299 -2.6035 8 14 2.3216 -1.1208 -4.0077 9 1 1.8260 -2.5207 -4.0074 10 1 1.8273 -0.4205 -5.2203 11 1 3.8066 -1.1214 -4.0078 12 7 2.0196 -0.6924 1.1996 13 6 2.0823 0.2229 2.3470 14 6 2.5960 -0.5326 3.5743 15 1 3.5879 -0.9360 3.3711 16 6 2.6634 0.4174 4.7715 17 6 2.9042 -0.3701 6.0341 18 6 3.3487 0.2995 7.1632 19 6 3.5741 -0.3901 8.3379 20 6 3.3539 -1.7541 8.3885 21 6 2.9120 -2.4219 7.2640 22 6 2.6881 -1.7312 6.0830 23 6 2.2169 -2.4974 4.8744 24 8 1.6973 -1.6012 3.8927 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7098 1.1615 -3.4845 29 1 2.9173 -1.1204 1.0290 30 1 1.0869 0.6165 2.5525 31 1 2.7587 1.0463 2.1183 32 1 1.7220 0.9603 4.8568 33 1 3.4780 1.1268 4.6258 34 1 3.5200 1.3652 7.1239 35 1 3.9209 0.1350 9.2157 36 1 3.5271 -2.2962 9.3065 37 1 2.7440 -3.4882 7.3033 38 1 1.4367 -3.1978 5.1726 39 1 3.0536 -3.0522 4.4499 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703975617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:47 Heat of formation + Delta-G solvation = -26.960760 kcal Electronic energy + Delta-G solvation = -19158.186743 eV Core-core repulsion = 16258.081488 eV Total energy + Delta-G solvation = -2900.105256 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26766 -37.69713 -35.68092 -33.38108 -32.39083 -31.63582 -30.17555 -27.99294 -25.62184 -25.27458 -24.49070 -22.39224 -21.59996 -20.03044 -19.60838 -17.14825 -16.49753 -16.15181 -15.80854 -15.20515 -14.77933 -14.67263 -13.99701 -13.79092 -13.62917 -13.48614 -13.10128 -12.79345 -12.60655 -12.00258 -11.88548 -11.72705 -11.49233 -11.20565 -11.02471 -10.90670 -10.72516 -10.37577 -10.24277 -10.06591 -9.84359 -9.36411 -8.87705 -8.78174 -8.67033 -8.43742 -7.17089 -5.99291 -4.05593 1.20357 1.23624 3.33174 3.37466 3.40500 3.59212 4.01181 4.41565 4.56586 4.64066 4.76784 4.83513 4.99710 5.21150 5.27691 5.31780 5.38128 5.43450 5.50785 5.65124 5.67795 5.83112 5.86446 5.89957 6.02819 6.15252 6.31091 6.35581 6.44252 6.53665 6.86217 6.94924 7.21663 7.29838 7.42734 7.57189 7.81725 7.95184 8.32832 8.44618 8.72584 9.05409 9.60097 11.07052 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.046348 B = 0.003642 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.981393 B = 7685.673057 C = 7889.273699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.679 5.679 13 C 0.068 3.932 14 C 0.095 3.905 15 H 0.057 0.943 16 C -0.112 4.112 17 C -0.067 4.067 18 C -0.120 4.120 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.114 4.114 22 C -0.116 4.116 23 C 0.097 3.903 24 O -0.346 6.346 25 H 0.004 0.996 26 H 0.079 0.921 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.328 0.672 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 -2.474 19.788 20.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.310 5.310 13 C -0.062 4.062 14 C 0.037 3.963 15 H 0.075 0.925 16 C -0.150 4.150 17 C -0.068 4.068 18 C -0.138 4.138 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.132 4.132 22 C -0.116 4.116 23 C 0.020 3.980 24 O -0.264 6.264 25 H 0.023 0.977 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.120 0.880 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.277 -2.611 19.697 20.325 hybrid contribution 1.354 0.162 -0.758 1.560 sum 5.631 -2.449 18.940 19.910 Atomic orbital electron populations 1.21694 0.97824 0.99423 0.99196 1.19105 0.92737 0.92146 0.85573 0.98323 1.21240 1.31443 1.12471 0.90497 0.92276 1.24920 0.95073 0.95013 0.99018 1.69891 1.36659 1.22900 1.23512 0.86584 0.79015 0.79829 0.82085 1.20176 1.21333 1.20373 1.60648 1.31883 1.32849 1.05627 1.21927 1.00610 0.93552 0.90089 1.22219 0.93242 0.87480 0.93400 0.92470 1.21183 1.03290 0.98309 0.92193 1.19607 0.98258 0.93251 0.95642 1.21098 1.00143 0.99869 0.92644 1.21084 1.00551 0.94588 0.97798 1.21055 1.00398 0.94707 0.98289 1.20998 0.99942 0.99826 0.92421 1.20440 1.00279 0.94236 0.96641 1.21413 0.99266 0.91568 0.85755 1.88269 1.41926 1.38804 1.57373 0.97705 0.90253 0.94908 0.92905 0.85535 0.90905 0.94819 0.89414 0.89823 0.86026 0.86180 0.86159 0.85956 0.88038 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.19 37.16 0.34 -2.83 16 2 C 0.21 5.49 2.60 -68.86 -0.18 5.31 16 3 H 0.00 -0.02 7.80 -51.93 -0.40 -0.43 16 4 C -0.52 -14.44 8.59 -34.44 -0.30 -14.73 16 5 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.77 11.32 55.43 0.63 -25.14 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.68 -14.96 6.19 -107.95 -0.67 -15.63 16 13 C 0.07 1.25 5.16 -3.82 -0.02 1.23 16 14 C 0.09 1.46 2.83 -26.74 -0.08 1.39 16 15 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 16 C -0.11 -1.44 5.32 -27.88 -0.15 -1.59 16 17 C -0.07 -0.85 5.78 -104.59 -0.60 -1.46 16 18 C -0.12 -1.30 9.67 -39.51 -0.38 -1.68 16 19 C -0.12 -1.19 10.05 -39.64 -0.40 -1.59 16 20 C -0.13 -1.22 10.05 -39.64 -0.40 -1.62 16 21 C -0.11 -1.20 9.67 -39.50 -0.38 -1.58 16 22 C -0.12 -1.45 5.80 -104.62 -0.61 -2.06 16 23 C 0.10 1.27 6.66 35.99 0.24 1.51 16 24 O -0.35 -5.81 10.34 -35.23 -0.36 -6.17 16 25 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 26 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.33 7.00 8.22 -39.29 -0.32 6.68 16 30 H 0.07 1.40 7.44 -51.93 -0.39 1.01 16 31 H 0.03 0.60 8.05 -51.93 -0.42 0.18 16 32 H 0.09 1.14 8.10 -51.93 -0.42 0.71 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 317.33 15.07 4.78 4.78 Total: -1.00 -30.45 317.33 -9.64 -40.09 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.99 Total: 3.71 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -3.00 Total: -18.09 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.04 Total: -40.77 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.36 Total: -6.17 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.45 -9.64 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703975617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.133 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds