Wall clock time and date at job start Mon Mar 30 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47525 * 2 1 4 4 C 1.50696 * 109.47549 * 239.99065 * 2 1 3 5 5 H 1.08001 * 120.00309 * 240.00894 * 4 2 1 6 6 C 1.37881 * 119.99555 * 60.00274 * 4 2 1 7 7 N 1.31513 * 120.00309 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99649 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47410 * 60.00335 * 8 6 4 10 10 H 1.48506 * 109.47124 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47274 * 300.00124 * 8 6 4 12 12 N 1.46901 * 109.46636 * 119.99322 * 2 1 3 13 13 C 1.46908 * 111.00155 * 275.00066 * 12 2 1 14 14 C 1.52997 * 109.46868 * 180.02562 * 13 12 2 15 15 H 1.08998 * 109.79770 * 59.49829 * 14 13 12 16 16 C 1.52976 * 109.63175 * 179.97438 * 14 13 12 17 17 C 1.50740 * 109.76291 * 168.91990 * 16 14 13 18 18 C 1.38594 * 118.76499 * 163.01731 * 17 16 14 19 19 C 1.38066 * 120.27781 * 179.73247 * 18 17 16 20 20 C 1.38258 * 119.86410 * 359.93024 * 19 18 17 21 21 C 1.38055 * 119.89382 * 0.11132 * 20 19 18 22 22 C 1.37907 * 121.35392 * 342.86284 * 17 16 14 23 23 C 1.50658 * 121.49964 * 0.70317 * 22 17 16 24 24 O 1.42725 * 110.26303 * 343.80237 * 23 22 17 25 25 H 1.08996 * 109.47276 * 300.00952 * 1 2 3 26 26 H 1.09005 * 109.46698 * 60.00580 * 1 2 3 27 27 H 1.08996 * 109.47028 * 179.97438 * 1 2 3 28 28 H 0.96998 * 120.00395 * 179.97438 * 7 6 4 29 29 H 1.00906 * 111.00370 * 151.04921 * 12 2 1 30 30 H 1.08997 * 109.46794 * 60.00341 * 13 12 2 31 31 H 1.08991 * 109.46871 * 299.99983 * 13 12 2 32 32 H 1.09005 * 109.41906 * 48.83322 * 16 14 13 33 33 H 1.08995 * 109.41957 * 289.01029 * 16 14 13 34 34 H 1.08007 * 119.86288 * 359.70722 * 18 17 16 35 35 H 1.08007 * 120.07323 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.05522 * 180.13749 * 20 19 18 37 37 H 1.08010 * 119.84843 * 179.75367 * 21 20 19 38 38 H 1.08995 * 109.34187 * 223.56255 * 23 22 17 39 39 H 1.08997 * 109.33957 * 104.04553 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2396 -2.4826 7 7 0.9437 0.8299 -2.6035 8 14 2.3216 -1.1208 -4.0077 9 1 1.8260 -2.5207 -4.0074 10 1 1.8273 -0.4205 -5.2203 11 1 3.8066 -1.1214 -4.0078 12 7 2.0196 -0.6924 1.1996 13 6 2.0823 0.2229 2.3470 14 6 2.5960 -0.5326 3.5743 15 1 3.5879 -0.9360 3.3711 16 6 2.6634 0.4174 4.7715 17 6 2.9042 -0.3701 6.0341 18 6 3.3487 0.2995 7.1632 19 6 3.5741 -0.3901 8.3379 20 6 3.3539 -1.7541 8.3885 21 6 2.9120 -2.4219 7.2640 22 6 2.6881 -1.7312 6.0830 23 6 2.2169 -2.4974 4.8744 24 8 1.6973 -1.6012 3.8927 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7098 1.1615 -3.4845 29 1 2.9173 -1.1204 1.0290 30 1 1.0869 0.6165 2.5525 31 1 2.7587 1.0463 2.1183 32 1 1.7220 0.9603 4.8568 33 1 3.4780 1.1268 4.6258 34 1 3.5200 1.3652 7.1239 35 1 3.9209 0.1350 9.2157 36 1 3.5271 -2.2962 9.3065 37 1 2.7440 -3.4882 7.3033 38 1 1.4367 -3.1978 5.1726 39 1 3.0536 -3.0522 4.4499 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703975617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:47 Heat of formation + Delta-G solvation = -45.535556 kcal Electronic energy + Delta-G solvation = -19158.992207 eV Core-core repulsion = 16258.081488 eV Total energy + Delta-G solvation = -2900.910719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.21816 -38.79581 -37.43865 -34.87075 -33.85222 -32.59433 -31.56646 -29.55896 -27.38537 -26.58058 -25.87628 -23.31151 -22.79550 -21.72031 -20.90280 -18.60571 -18.06814 -17.14661 -16.97929 -16.67421 -16.26736 -15.63615 -15.50430 -15.22124 -14.90401 -14.60016 -14.46581 -14.02593 -13.85705 -13.52756 -13.30452 -12.93793 -12.80113 -12.70330 -12.63242 -12.38478 -12.24166 -12.18276 -12.01147 -11.85372 -11.38448 -10.90860 -10.56437 -10.48678 -9.68154 -9.51325 -8.99888 -8.12605 -6.27028 0.39092 0.44633 1.42919 1.45452 1.52967 2.42270 2.77645 2.88483 3.15603 3.41273 3.76002 3.77975 3.99234 4.08326 4.15259 4.25570 4.35431 4.45585 4.49697 4.58832 4.66629 4.71864 4.77036 4.84658 4.85854 5.02500 5.09261 5.10201 5.16975 5.23224 5.47206 5.52363 5.59654 5.66665 5.67229 5.85994 6.09454 6.21823 6.30634 6.48269 6.79057 7.01456 7.43331 8.93133 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.046348 B = 0.003642 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.981393 B = 7685.673057 C = 7889.273699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.216 3.784 3 H -0.028 1.028 4 C -0.540 4.540 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.681 5.681 13 C 0.070 3.930 14 C 0.102 3.898 15 H 0.060 0.940 16 C -0.105 4.105 17 C -0.091 4.091 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.136 4.136 23 C 0.094 3.906 24 O -0.377 6.377 25 H 0.018 0.982 26 H 0.058 0.942 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.331 0.669 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.114 0.886 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -3.213 21.338 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 H -0.011 1.011 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.312 5.312 13 C -0.060 4.060 14 C 0.044 3.956 15 H 0.078 0.922 16 C -0.142 4.142 17 C -0.091 4.091 18 C -0.145 4.145 19 C -0.141 4.141 20 C -0.145 4.145 21 C -0.137 4.137 22 C -0.136 4.136 23 C 0.018 3.982 24 O -0.296 6.296 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.132 0.868 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.392 -3.356 21.273 22.201 hybrid contribution 1.005 0.387 -1.138 1.567 sum 6.396 -2.969 20.135 21.334 Atomic orbital electron populations 1.21528 0.97987 0.98642 0.98831 1.18916 0.92612 0.90821 0.86892 1.01069 1.21569 1.31831 1.12750 0.91635 0.92249 1.25756 0.95133 0.95684 1.02091 1.70018 1.37427 1.24073 1.24273 0.85518 0.78786 0.78590 0.78151 1.19734 1.20871 1.19403 1.60544 1.32158 1.33348 1.05116 1.21952 1.00355 0.93638 0.90038 1.22068 0.92722 0.87727 0.93055 0.92173 1.21076 1.03690 0.97943 0.91506 1.19691 0.99834 0.93574 0.95998 1.21325 0.99880 1.00798 0.92540 1.21463 0.99544 0.94909 0.98208 1.21446 0.99137 0.94947 0.98945 1.21265 0.99563 1.00907 0.91998 1.20489 1.01535 0.94468 0.97098 1.21564 0.99855 0.91264 0.85530 1.88195 1.43013 1.39663 1.58751 0.96250 0.92364 0.95688 0.92788 0.85200 0.92066 0.94149 0.89953 0.88284 0.84544 0.83557 0.83424 0.84062 0.86840 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.88 9.19 71.98 0.66 -5.21 16 2 C 0.22 11.43 2.60 44.17 0.11 11.55 16 3 H -0.03 -1.62 7.80 -2.39 -0.02 -1.64 16 4 C -0.54 -30.40 8.59 25.60 0.22 -30.18 16 5 H 0.06 3.26 7.62 -2.91 -0.02 3.24 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.83 11.32 21.45 0.24 -53.58 16 8 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 N -0.68 -30.43 6.19 -495.45 -3.07 -33.50 16 13 C 0.07 2.59 5.16 86.30 0.45 3.04 16 14 C 0.10 3.15 2.83 30.59 0.09 3.24 16 15 H 0.06 1.79 8.07 -2.39 -0.02 1.77 16 16 C -0.10 -2.64 5.32 29.85 0.16 -2.48 16 17 C -0.09 -2.20 5.78 -19.85 -0.11 -2.31 16 18 C -0.13 -2.52 9.67 22.31 0.22 -2.30 16 19 C -0.12 -2.04 10.05 22.23 0.22 -1.81 16 20 C -0.13 -2.05 10.05 22.23 0.22 -1.83 16 21 C -0.12 -2.26 9.67 22.32 0.22 -2.04 16 22 C -0.14 -3.24 5.80 -19.86 -0.12 -3.35 16 23 C 0.09 2.41 6.66 71.22 0.47 2.89 16 24 O -0.38 -12.70 10.34 -148.98 -1.54 -14.24 16 25 H 0.02 0.91 7.45 -2.39 -0.02 0.89 16 26 H 0.06 3.31 6.07 -2.38 -0.01 3.29 16 27 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.33 14.30 8.22 -89.69 -0.74 13.56 16 30 H 0.06 2.39 7.44 -2.39 -0.02 2.38 16 31 H 0.04 1.44 8.05 -2.39 -0.02 1.43 16 32 H 0.08 2.12 8.10 -2.38 -0.02 2.10 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 34 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -65.17 317.33 1.21 -63.96 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.29 Total: 21.02 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 3.26 Total: -29.66 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -2.83 Total: -87.09 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.54 Total: -14.24 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -65.17 1.21 -63.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703975617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.423 kcal (2) G-P(sol) polarization free energy of solvation -65.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds