Wall clock time and date at job start Mon Mar 30 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46932 * 2 1 4 4 C 1.50696 * 109.47408 * 120.00499 * 2 1 3 5 5 H 1.07997 * 120.00279 * 120.00073 * 4 2 1 6 6 C 1.37877 * 119.99754 * 299.99696 * 4 2 1 7 7 N 1.31517 * 120.00089 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47002 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47211 * 120.00169 * 8 6 4 11 11 H 1.48500 * 109.47239 * 240.00066 * 8 6 4 12 12 N 1.46906 * 109.46848 * 240.00210 * 2 1 3 13 13 C 1.46905 * 110.99935 * 84.99696 * 12 2 1 14 14 C 1.52997 * 109.46983 * 179.97438 * 13 12 2 15 15 H 1.08999 * 109.80151 * 304.49510 * 14 13 12 16 16 C 1.52975 * 109.63283 * 183.98423 * 14 13 12 17 17 C 1.50741 * 109.75968 * 191.07588 * 16 14 13 18 18 C 1.38594 * 118.76655 * 196.79100 * 17 16 14 19 19 C 1.38068 * 120.27776 * 180.47091 * 18 17 16 20 20 C 1.38260 * 119.86255 * 359.97438 * 19 18 17 21 21 C 1.38059 * 119.89721 * 359.90497 * 20 19 18 22 22 C 1.37915 * 121.34967 * 17.08615 * 17 16 14 23 23 C 1.50652 * 121.50346 * 359.40832 * 22 17 16 24 24 O 1.42725 * 110.26865 * 16.10093 * 23 22 17 25 25 H 1.09000 * 109.46880 * 299.99580 * 1 2 3 26 26 H 1.08995 * 109.47167 * 59.99659 * 1 2 3 27 27 H 1.08999 * 109.46932 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99939 * 180.02562 * 7 6 4 29 29 H 1.00897 * 110.99883 * 208.95164 * 12 2 1 30 30 H 1.09000 * 109.46800 * 59.99869 * 13 12 2 31 31 H 1.09001 * 109.47068 * 300.00429 * 13 12 2 32 32 H 1.08997 * 109.41743 * 70.99311 * 16 14 13 33 33 H 1.09000 * 109.42567 * 311.16356 * 16 14 13 34 34 H 1.08001 * 119.85790 * 0.46114 * 18 17 16 35 35 H 1.08001 * 120.06692 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.05283 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.84578 * 180.02562 * 21 20 19 38 38 H 1.08998 * 109.33796 * 255.85733 * 23 22 17 39 39 H 1.09005 * 109.20610 * 136.26135 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3227 -1.1197 4.0078 9 1 3.1475 -2.2865 3.6035 10 1 3.1474 -0.1860 4.8159 11 1 1.1681 -1.5868 4.8164 12 7 2.0196 -0.6925 -1.1995 13 6 2.0823 0.2227 -2.3470 14 6 2.5960 -0.5328 -3.5743 15 1 3.5564 -0.9958 -3.3476 16 6 2.7571 0.4383 -4.7453 17 6 2.9980 -0.3333 -6.0177 18 6 3.5139 0.3362 -7.1161 19 6 3.7377 -0.3379 -8.3001 20 6 3.4465 -1.6864 -8.3903 21 6 2.9349 -2.3546 -7.2958 22 6 2.7104 -1.6792 -6.1061 23 6 2.1548 -2.4442 -4.9331 24 8 1.6514 -1.5422 -3.9482 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7089 1.1611 3.4844 29 1 2.9173 -1.1205 -1.0289 30 1 2.7587 1.0463 -2.1183 31 1 1.0869 0.6164 -2.5525 32 1 3.6039 1.0977 -4.5554 33 1 1.8505 1.0345 -4.8492 34 1 3.7416 1.3895 -7.0456 35 1 4.1402 0.1871 -9.1539 36 1 3.6199 -2.2166 -9.3150 37 1 2.7082 -3.4081 -7.3670 38 1 2.9439 -3.0545 -4.4938 39 1 1.3473 -3.0908 -5.2767 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703975619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:49 Heat of formation + Delta-G solvation = -27.306585 kcal Electronic energy + Delta-G solvation = -19150.791407 eV Core-core repulsion = 16250.671155 eV Total energy + Delta-G solvation = -2900.120252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27081 -37.70033 -35.69140 -33.38520 -32.39255 -31.64248 -30.17707 -27.99618 -25.61876 -25.28406 -24.49600 -22.39428 -21.60358 -20.04288 -19.60507 -17.16025 -16.50200 -16.15404 -15.80390 -15.21690 -14.77938 -14.67271 -14.00267 -13.77919 -13.64837 -13.48923 -13.10844 -12.79902 -12.59404 -12.00799 -11.89092 -11.72745 -11.50827 -11.21860 -11.03500 -10.92919 -10.68944 -10.37171 -10.23252 -10.07403 -9.86078 -9.36784 -8.87859 -8.76912 -8.67244 -8.44962 -7.18119 -5.99952 -4.06093 1.20142 1.23444 3.30325 3.38141 3.42523 3.59019 4.00651 4.41258 4.56352 4.63816 4.76551 4.83297 4.99414 5.21187 5.27601 5.31358 5.37999 5.43429 5.50857 5.65485 5.67527 5.82455 5.86248 5.89571 6.03068 6.14311 6.31020 6.35433 6.44317 6.53362 6.86024 6.94594 7.21522 7.29540 7.42319 7.56607 7.81746 7.94693 8.32390 8.43878 8.72102 9.05276 9.59757 11.06448 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.045953 B = 0.003629 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.169462 B = 7713.814806 C = 7884.538021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.680 5.680 13 C 0.068 3.932 14 C 0.095 3.905 15 H 0.058 0.942 16 C -0.112 4.112 17 C -0.067 4.067 18 C -0.119 4.119 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.114 4.114 22 C -0.116 4.116 23 C 0.098 3.902 24 O -0.348 6.348 25 H 0.079 0.921 26 H 0.004 0.996 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.063 0.937 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.340 -2.434 -19.786 20.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.311 5.311 13 C -0.062 4.062 14 C 0.037 3.963 15 H 0.076 0.924 16 C -0.150 4.150 17 C -0.068 4.068 18 C -0.138 4.138 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.132 4.132 22 C -0.116 4.116 23 C 0.020 3.980 24 O -0.266 6.266 25 H 0.098 0.902 26 H 0.023 0.977 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.145 0.855 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.081 0.919 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.435 -2.570 -19.708 20.364 hybrid contribution 1.350 0.171 0.781 1.568 sum 5.785 -2.400 -18.928 19.937 Atomic orbital electron populations 1.21694 0.97810 0.99423 0.99217 1.19116 0.92754 0.92167 0.85587 0.98297 1.21312 1.31278 1.12433 0.90468 0.92171 1.24927 0.95088 0.95024 0.99047 1.69914 1.36741 1.22984 1.23293 0.86470 0.78602 0.79600 0.82891 1.19759 1.21146 1.20982 1.60654 1.31877 1.32915 1.05672 1.21922 1.00676 0.93565 0.90023 1.22219 0.92504 0.88391 0.93186 0.92395 1.21184 1.03167 0.98424 0.92211 1.19611 0.98017 0.93364 0.95766 1.21098 0.99960 0.99882 0.92812 1.21084 1.00502 0.94770 0.97657 1.21055 1.00099 0.94806 0.98487 1.20997 0.99821 0.99846 0.92519 1.20444 1.00140 0.94422 0.96618 1.21415 0.99048 0.91381 0.86116 1.88254 1.39136 1.42250 1.56931 0.90234 0.97696 0.94915 0.93023 0.85535 0.94790 0.90841 0.89808 0.89424 0.86024 0.86177 0.86157 0.85954 0.91884 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 9.19 37.16 0.34 -2.83 16 2 C 0.21 5.46 2.60 -68.86 -0.18 5.28 16 3 H 0.00 -0.02 7.80 -51.93 -0.40 -0.42 16 4 C -0.52 -14.37 8.59 -34.44 -0.30 -14.67 16 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.72 11.32 55.43 0.63 -25.10 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 N -0.68 -14.96 6.25 -107.95 -0.68 -15.63 16 13 C 0.07 1.25 5.14 -3.82 -0.02 1.23 16 14 C 0.10 1.47 2.81 -26.75 -0.08 1.40 16 15 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 16 C -0.11 -1.45 5.32 -27.88 -0.15 -1.59 16 17 C -0.07 -0.85 5.78 -104.59 -0.60 -1.46 16 18 C -0.12 -1.30 9.67 -39.51 -0.38 -1.68 16 19 C -0.12 -1.19 10.05 -39.64 -0.40 -1.59 16 20 C -0.13 -1.22 10.05 -39.64 -0.40 -1.61 16 21 C -0.11 -1.20 9.67 -39.50 -0.38 -1.58 16 22 C -0.12 -1.45 5.80 -104.62 -0.61 -2.06 16 23 C 0.10 1.27 6.66 35.98 0.24 1.51 16 24 O -0.35 -5.82 10.40 -35.23 -0.37 -6.19 16 25 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 26 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.33 6.98 8.22 -39.29 -0.32 6.66 16 30 H 0.03 0.60 8.06 -51.93 -0.42 0.18 16 31 H 0.07 1.41 7.44 -51.93 -0.39 1.03 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -30.46 317.41 -9.65 -40.10 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.99 Total: 3.67 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -3.00 Total: -18.05 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: -0.05 Total: -40.73 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.37 Total: -6.19 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.46 -9.65 -40.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703975619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.796 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds