Wall clock time and date at job start Mon Mar 30 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46932 * 2 1 4 4 C 1.50696 * 109.47408 * 120.00499 * 2 1 3 5 5 H 1.07997 * 120.00279 * 120.00073 * 4 2 1 6 6 C 1.37877 * 119.99754 * 299.99696 * 4 2 1 7 7 N 1.31517 * 120.00089 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47002 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47211 * 120.00169 * 8 6 4 11 11 H 1.48500 * 109.47239 * 240.00066 * 8 6 4 12 12 N 1.46906 * 109.46848 * 240.00210 * 2 1 3 13 13 C 1.46905 * 110.99935 * 84.99696 * 12 2 1 14 14 C 1.52997 * 109.46983 * 179.97438 * 13 12 2 15 15 H 1.08999 * 109.80151 * 304.49510 * 14 13 12 16 16 C 1.52975 * 109.63283 * 183.98423 * 14 13 12 17 17 C 1.50741 * 109.75968 * 191.07588 * 16 14 13 18 18 C 1.38594 * 118.76655 * 196.79100 * 17 16 14 19 19 C 1.38068 * 120.27776 * 180.47091 * 18 17 16 20 20 C 1.38260 * 119.86255 * 359.97438 * 19 18 17 21 21 C 1.38059 * 119.89721 * 359.90497 * 20 19 18 22 22 C 1.37915 * 121.34967 * 17.08615 * 17 16 14 23 23 C 1.50652 * 121.50346 * 359.40832 * 22 17 16 24 24 O 1.42725 * 110.26865 * 16.10093 * 23 22 17 25 25 H 1.09000 * 109.46880 * 299.99580 * 1 2 3 26 26 H 1.08995 * 109.47167 * 59.99659 * 1 2 3 27 27 H 1.08999 * 109.46932 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99939 * 180.02562 * 7 6 4 29 29 H 1.00897 * 110.99883 * 208.95164 * 12 2 1 30 30 H 1.09000 * 109.46800 * 59.99869 * 13 12 2 31 31 H 1.09001 * 109.47068 * 300.00429 * 13 12 2 32 32 H 1.08997 * 109.41743 * 70.99311 * 16 14 13 33 33 H 1.09000 * 109.42567 * 311.16356 * 16 14 13 34 34 H 1.08001 * 119.85790 * 0.46114 * 18 17 16 35 35 H 1.08001 * 120.06692 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.05283 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.84578 * 180.02562 * 21 20 19 38 38 H 1.08998 * 109.33796 * 255.85733 * 23 22 17 39 39 H 1.09005 * 109.20610 * 136.26135 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3227 -1.1197 4.0078 9 1 3.1475 -2.2865 3.6035 10 1 3.1474 -0.1860 4.8159 11 1 1.1681 -1.5868 4.8164 12 7 2.0196 -0.6925 -1.1995 13 6 2.0823 0.2227 -2.3470 14 6 2.5960 -0.5328 -3.5743 15 1 3.5564 -0.9958 -3.3476 16 6 2.7571 0.4383 -4.7453 17 6 2.9980 -0.3333 -6.0177 18 6 3.5139 0.3362 -7.1161 19 6 3.7377 -0.3379 -8.3001 20 6 3.4465 -1.6864 -8.3903 21 6 2.9349 -2.3546 -7.2958 22 6 2.7104 -1.6792 -6.1061 23 6 2.1548 -2.4442 -4.9331 24 8 1.6514 -1.5422 -3.9482 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7089 1.1611 3.4844 29 1 2.9173 -1.1205 -1.0289 30 1 2.7587 1.0463 -2.1183 31 1 1.0869 0.6164 -2.5525 32 1 3.6039 1.0977 -4.5554 33 1 1.8505 1.0345 -4.8492 34 1 3.7416 1.3895 -7.0456 35 1 4.1402 0.1871 -9.1539 36 1 3.6199 -2.2166 -9.3150 37 1 2.7082 -3.4081 -7.3670 38 1 2.9439 -3.0545 -4.4938 39 1 1.3473 -3.0908 -5.2767 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703975619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:48 Heat of formation + Delta-G solvation = -45.910965 kcal Electronic energy + Delta-G solvation = -19151.598153 eV Core-core repulsion = 16250.671155 eV Total energy + Delta-G solvation = -2900.926998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22095 -38.79764 -37.44764 -34.87637 -33.85164 -32.59857 -31.56860 -29.55998 -27.39010 -26.57735 -25.88399 -23.31365 -22.79805 -21.73263 -20.89767 -18.61409 -18.07819 -17.14567 -16.97558 -16.68199 -16.26285 -15.64058 -15.49473 -15.24030 -14.91095 -14.61112 -14.46634 -14.01356 -13.84246 -13.53926 -13.32626 -12.95799 -12.80928 -12.70714 -12.61197 -12.38804 -12.23202 -12.18844 -12.00803 -11.85644 -11.39493 -10.89141 -10.57755 -10.49314 -9.68228 -9.51425 -9.00803 -8.13032 -6.27250 0.38976 0.44547 1.41772 1.43662 1.55697 2.42039 2.77530 2.88110 3.15329 3.40801 3.75796 3.77411 3.99134 4.09139 4.15168 4.25797 4.35235 4.45504 4.49644 4.58081 4.66450 4.71671 4.76776 4.84325 4.85732 5.02464 5.09301 5.10136 5.16736 5.23109 5.47206 5.52254 5.59590 5.66600 5.67375 5.85788 6.09366 6.21671 6.29999 6.47782 6.78864 7.01205 7.43204 8.93080 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.045953 B = 0.003629 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.169462 B = 7713.814806 C = 7884.538021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.215 3.785 3 H -0.028 1.028 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.682 5.682 13 C 0.070 3.930 14 C 0.103 3.897 15 H 0.060 0.940 16 C -0.105 4.105 17 C -0.091 4.091 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.136 4.136 23 C 0.095 3.905 24 O -0.379 6.379 25 H 0.058 0.942 26 H 0.018 0.982 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.331 0.669 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.067 0.933 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.461 -3.167 -21.323 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 H -0.010 1.010 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.206 1.206 12 N -0.313 5.313 13 C -0.060 4.060 14 C 0.045 3.955 15 H 0.078 0.922 16 C -0.142 4.142 17 C -0.091 4.091 18 C -0.145 4.145 19 C -0.141 4.141 20 C -0.145 4.145 21 C -0.137 4.137 22 C -0.136 4.136 23 C 0.018 3.982 24 O -0.298 6.298 25 H 0.076 0.924 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.154 0.846 35 H 0.164 0.836 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.085 0.915 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.564 -3.309 -21.269 22.233 hybrid contribution 0.994 0.396 1.159 1.577 sum 6.559 -2.913 -20.111 21.353 Atomic orbital electron populations 1.21528 0.97980 0.98660 0.98833 1.18925 0.92622 0.90847 0.86897 1.01033 1.21617 1.31649 1.12670 0.91600 0.92253 1.25760 0.95159 0.95700 1.02106 1.70034 1.37487 1.24137 1.24139 0.85406 0.78097 0.78590 0.78903 1.19042 1.20465 1.20647 1.60551 1.32167 1.33407 1.05158 1.21943 1.00386 0.93656 0.89986 1.22063 0.91940 0.88695 0.92826 0.92174 1.21077 1.03616 0.97927 0.91605 1.19694 0.99576 0.93733 0.96096 1.21325 0.99691 1.00770 0.92761 1.21463 0.99605 0.95070 0.97981 1.21447 0.98863 0.94994 0.99168 1.21264 0.99505 1.00906 0.92046 1.20493 1.01304 0.94673 0.97141 1.21568 0.99710 0.91042 0.85858 1.88181 1.40213 1.43117 1.58269 0.92351 0.96271 0.95661 0.92811 0.85177 0.94097 0.92067 0.88308 0.89914 0.84552 0.83558 0.83419 0.84048 0.91478 0.86794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.88 9.19 71.98 0.66 -5.22 16 2 C 0.22 11.39 2.60 44.17 0.11 11.50 16 3 H -0.03 -1.60 7.80 -2.39 -0.02 -1.61 16 4 C -0.54 -30.21 8.59 25.60 0.22 -29.99 16 5 H 0.06 3.27 7.62 -2.91 -0.02 3.25 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -53.73 11.32 21.45 0.24 -53.49 16 8 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 N -0.68 -30.44 6.25 -495.43 -3.10 -33.54 16 13 C 0.07 2.60 5.14 86.30 0.44 3.04 16 14 C 0.10 3.17 2.81 30.58 0.09 3.26 16 15 H 0.06 1.80 8.07 -2.39 -0.02 1.78 16 16 C -0.10 -2.64 5.32 29.85 0.16 -2.48 16 17 C -0.09 -2.19 5.78 -19.84 -0.11 -2.31 16 18 C -0.13 -2.52 9.67 22.31 0.22 -2.30 16 19 C -0.12 -2.03 10.05 22.23 0.22 -1.81 16 20 C -0.13 -2.05 10.05 22.23 0.22 -1.82 16 21 C -0.12 -2.25 9.67 22.32 0.22 -2.03 16 22 C -0.14 -3.24 5.80 -19.86 -0.12 -3.35 16 23 C 0.09 2.41 6.66 71.22 0.47 2.89 16 24 O -0.38 -12.73 10.40 -148.98 -1.55 -14.28 16 25 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 26 H 0.02 0.90 7.45 -2.39 -0.02 0.88 16 27 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.33 14.26 8.22 -89.70 -0.74 13.53 16 30 H 0.04 1.46 8.06 -2.39 -0.02 1.44 16 31 H 0.06 2.40 7.44 -2.39 -0.02 2.39 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 34 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.11 2.50 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -65.14 317.41 1.17 -63.97 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.29 Total: 20.84 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 3.26 Total: -29.52 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -2.86 Total: -87.02 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -1.55 Total: -14.28 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -65.14 1.17 -63.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703975619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.058 kcal (2) G-P(sol) polarization free energy of solvation -65.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds