Wall clock time and date at job start Mon Mar 30 2020 06:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.50706 * 109.47032 * 120.00448 * 2 1 3 5 5 H 1.08001 * 119.99930 * 119.99860 * 4 2 1 6 6 C 1.37871 * 119.99762 * 299.99926 * 4 2 1 7 7 N 1.31519 * 119.99631 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00377 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46925 * 90.00223 * 8 6 4 10 10 H 1.48497 * 109.47251 * 210.00352 * 8 6 4 11 11 H 1.48507 * 109.46917 * 330.00578 * 8 6 4 12 12 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 13 13 C 1.46898 * 110.99888 * 85.00162 * 12 2 1 14 14 C 1.53007 * 109.46764 * 179.97438 * 13 12 2 15 15 H 1.08994 * 109.63053 * 60.00056 * 14 13 12 16 16 C 1.52966 * 109.63047 * 180.39851 * 14 13 12 17 17 C 1.50746 * 109.77274 * 168.86908 * 16 14 13 18 18 C 1.38591 * 118.76952 * 163.02691 * 17 16 14 19 19 C 1.38071 * 120.27447 * 179.78627 * 18 17 16 20 20 C 1.38252 * 119.86797 * 359.97438 * 19 18 17 21 21 C 1.38059 * 119.89231 * 0.09725 * 20 19 18 22 22 C 1.37903 * 121.34505 * 342.98189 * 17 16 14 23 23 C 1.50659 * 121.51082 * 0.58838 * 22 17 16 24 24 O 1.42645 * 110.39174 * 343.97519 * 23 22 17 25 25 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 26 26 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 28 28 H 0.97005 * 119.99726 * 179.97438 * 7 6 4 29 29 H 1.00902 * 110.99923 * 208.96103 * 12 2 1 30 30 H 1.08995 * 109.47296 * 299.99911 * 13 12 2 31 31 H 1.08997 * 109.47334 * 60.00212 * 13 12 2 32 32 H 1.09000 * 109.41869 * 288.95775 * 16 14 13 33 33 H 1.09002 * 109.42483 * 48.83626 * 16 14 13 34 34 H 1.07996 * 119.86375 * 359.78444 * 18 17 16 35 35 H 1.08005 * 120.06522 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.05871 * 180.02562 * 20 19 18 37 37 H 1.08004 * 119.85166 * 180.02562 * 21 20 19 38 38 H 1.08998 * 109.33700 * 104.07772 * 23 22 17 39 39 H 1.09003 * 109.34040 * 223.60304 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5887 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9951 3.9072 11 1 0.8491 2.1772 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5961 -0.5328 -3.5743 15 1 1.9218 -1.3573 -3.8055 16 6 2.6724 0.4194 -4.7690 17 6 3.4266 -0.2373 -5.8971 18 6 3.3091 0.2895 -7.1736 19 6 3.9897 -0.2847 -8.2288 20 6 4.7920 -1.3893 -8.0112 21 6 4.9084 -1.9155 -6.7401 22 6 4.2236 -1.3416 -5.6800 23 6 4.3681 -1.9514 -4.3100 24 8 3.9079 -1.0434 -3.3107 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9039 -0.5278 4.4375 29 1 2.9172 -1.1206 -1.0288 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0462 -2.1182 32 1 1.6639 0.6647 -5.1018 33 1 3.1884 1.3326 -4.4725 34 1 2.6827 1.1526 -7.3436 35 1 3.8954 0.1283 -9.2223 36 1 5.3260 -1.8406 -8.8343 37 1 5.5357 -2.7783 -6.5708 38 1 3.7800 -2.8677 -4.2589 39 1 5.4167 -2.1875 -4.1287 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703975624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:52 Heat of formation + Delta-G solvation = -20.914027 kcal Electronic energy + Delta-G solvation = -19222.895547 eV Core-core repulsion = 16323.052497 eV Total energy + Delta-G solvation = -2899.843050 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.34676 -37.83105 -35.90765 -33.44124 -32.39432 -31.72332 -30.58340 -28.59054 -25.81139 -25.29453 -24.51922 -22.45316 -21.66056 -20.08375 -19.69509 -17.16528 -16.84709 -16.29702 -15.87722 -15.30729 -15.19178 -14.71684 -14.08080 -13.86439 -13.68521 -13.60937 -13.23457 -12.93715 -12.59551 -12.31214 -12.12533 -11.97063 -11.84758 -11.53820 -11.23090 -11.01518 -10.85178 -10.62084 -10.34345 -10.05382 -9.58222 -9.40855 -8.97540 -8.92175 -8.72019 -8.57556 -7.44738 -6.06318 -4.05687 1.15778 1.19330 3.28924 3.38066 3.40875 3.54604 3.88987 4.41359 4.47769 4.57461 4.70731 4.78013 4.92808 5.14984 5.23314 5.26416 5.34038 5.36656 5.45003 5.55501 5.60297 5.66597 5.81737 5.82892 5.98836 6.05343 6.25161 6.28233 6.31801 6.41313 6.47655 6.56720 6.74682 6.81624 6.83515 7.28242 7.42546 7.62221 7.97736 8.43665 8.66541 8.99541 9.55990 11.06818 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.046339 B = 0.003897 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.098388 B = 7183.713181 C = 7609.854283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.181 3.819 3 H 0.000 1.000 4 C -0.518 4.518 5 H 0.079 0.921 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.677 5.677 13 C 0.066 3.934 14 C 0.093 3.907 15 H 0.070 0.930 16 C -0.111 4.111 17 C -0.068 4.068 18 C -0.119 4.119 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.113 4.113 22 C -0.116 4.116 23 C 0.101 3.899 24 O -0.364 6.364 25 H 0.024 0.976 26 H 0.058 0.942 27 H 0.036 0.964 28 H 0.264 0.736 29 H 0.348 0.652 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.066 0.934 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 1.191 -22.706 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.072 3.928 3 H 0.018 0.982 4 C -0.556 4.556 5 H 0.097 0.903 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.226 1.226 11 H -0.194 1.194 12 N -0.309 5.309 13 C -0.064 4.064 14 C 0.035 3.965 15 H 0.088 0.912 16 C -0.149 4.149 17 C -0.068 4.068 18 C -0.137 4.137 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.131 4.131 22 C -0.116 4.116 23 C 0.024 3.976 24 O -0.283 6.283 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.167 0.833 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.084 0.916 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.419 0.994 -22.490 22.642 hybrid contribution 0.027 1.275 0.060 1.277 sum 2.445 2.268 -22.430 22.677 Atomic orbital electron populations 1.22077 0.98809 1.00993 0.97630 1.19533 0.91643 0.93020 0.88619 0.98206 1.21120 1.32137 1.13740 0.88588 0.90302 1.24938 0.95756 0.96720 0.95758 1.69900 1.45646 1.40314 0.97894 0.86794 0.80639 0.83618 0.76721 1.20534 1.22571 1.19405 1.60503 1.33725 1.31905 1.04812 1.21961 0.99414 0.94264 0.90740 1.22249 0.84426 0.95698 0.94127 0.91236 1.21172 1.00384 0.99644 0.93709 1.19584 0.97143 0.95290 0.94759 1.21091 1.00268 1.00167 0.92218 1.21090 0.97461 0.96598 0.98812 1.21060 0.99488 0.96958 0.96874 1.21000 0.99598 1.00040 0.92471 1.20395 0.97766 0.96518 0.96923 1.21384 1.00789 0.91782 0.83632 1.88093 1.32630 1.62181 1.45357 0.95661 0.92335 0.94517 0.92628 0.83259 0.90488 0.95212 0.89638 0.89591 0.86023 0.86147 0.86102 0.85887 0.91606 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.89 37.16 0.33 -2.77 16 2 C 0.18 4.38 2.19 -68.86 -0.15 4.23 16 3 H 0.00 0.01 6.86 -51.93 -0.36 -0.35 16 4 C -0.52 -14.79 9.17 -34.44 -0.32 -15.11 16 5 H 0.08 2.43 7.86 -52.49 -0.41 2.02 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 8 Si 0.89 22.34 24.37 -169.99 -4.14 18.19 16 9 H -0.28 -6.79 6.87 56.52 0.39 -6.40 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.27 -6.48 6.53 56.52 0.37 -6.11 16 12 N -0.68 -14.26 6.30 -107.95 -0.68 -14.94 16 13 C 0.07 1.13 5.21 -3.82 -0.02 1.11 16 14 C 0.09 1.36 2.89 -26.75 -0.08 1.28 16 15 H 0.07 1.02 8.08 -51.93 -0.42 0.61 16 16 C -0.11 -1.35 5.33 -27.88 -0.15 -1.50 16 17 C -0.07 -0.82 5.78 -104.59 -0.60 -1.42 16 18 C -0.12 -1.24 9.67 -39.51 -0.38 -1.62 16 19 C -0.12 -1.14 10.05 -39.64 -0.40 -1.53 16 20 C -0.13 -1.16 10.05 -39.64 -0.40 -1.56 16 21 C -0.11 -1.15 9.67 -39.50 -0.38 -1.53 16 22 C -0.12 -1.39 5.80 -104.61 -0.61 -2.00 16 23 C 0.10 1.25 6.66 35.99 0.24 1.49 16 24 O -0.36 -5.72 9.81 -35.23 -0.35 -6.06 16 25 H 0.02 0.49 7.45 -51.93 -0.39 0.10 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.35 7.64 7.64 -39.29 -0.30 7.34 16 30 H 0.08 1.23 7.44 -51.93 -0.39 0.84 16 31 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 309.62 15.07 4.67 4.67 Total: -1.00 -31.43 309.62 -8.58 -40.01 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.83 Total: 4.11 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -3.01 Total: -18.97 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.09 Total: -41.94 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.35 Total: -6.06 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.14 Total: 18.19 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.43 -8.58 -40.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703975624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.096 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds