Wall clock time and date at job start Mon Mar 30 2020 06:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.50706 * 109.47032 * 120.00448 * 2 1 3 5 5 H 1.08001 * 119.99930 * 119.99860 * 4 2 1 6 6 C 1.37871 * 119.99762 * 299.99926 * 4 2 1 7 7 N 1.31519 * 119.99631 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00377 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46925 * 90.00223 * 8 6 4 10 10 H 1.48497 * 109.47251 * 210.00352 * 8 6 4 11 11 H 1.48507 * 109.46917 * 330.00578 * 8 6 4 12 12 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 13 13 C 1.46898 * 110.99888 * 85.00162 * 12 2 1 14 14 C 1.53007 * 109.46764 * 179.97438 * 13 12 2 15 15 H 1.08994 * 109.63053 * 60.00056 * 14 13 12 16 16 C 1.52966 * 109.63047 * 180.39851 * 14 13 12 17 17 C 1.50746 * 109.77274 * 168.86908 * 16 14 13 18 18 C 1.38591 * 118.76952 * 163.02691 * 17 16 14 19 19 C 1.38071 * 120.27447 * 179.78627 * 18 17 16 20 20 C 1.38252 * 119.86797 * 359.97438 * 19 18 17 21 21 C 1.38059 * 119.89231 * 0.09725 * 20 19 18 22 22 C 1.37903 * 121.34505 * 342.98189 * 17 16 14 23 23 C 1.50659 * 121.51082 * 0.58838 * 22 17 16 24 24 O 1.42645 * 110.39174 * 343.97519 * 23 22 17 25 25 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 26 26 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 28 28 H 0.97005 * 119.99726 * 179.97438 * 7 6 4 29 29 H 1.00902 * 110.99923 * 208.96103 * 12 2 1 30 30 H 1.08995 * 109.47296 * 299.99911 * 13 12 2 31 31 H 1.08997 * 109.47334 * 60.00212 * 13 12 2 32 32 H 1.09000 * 109.41869 * 288.95775 * 16 14 13 33 33 H 1.09002 * 109.42483 * 48.83626 * 16 14 13 34 34 H 1.07996 * 119.86375 * 359.78444 * 18 17 16 35 35 H 1.08005 * 120.06522 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.05871 * 180.02562 * 20 19 18 37 37 H 1.08004 * 119.85166 * 180.02562 * 21 20 19 38 38 H 1.08998 * 109.33700 * 104.07772 * 23 22 17 39 39 H 1.09003 * 109.34040 * 223.60304 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5887 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9951 3.9072 11 1 0.8491 2.1772 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5961 -0.5328 -3.5743 15 1 1.9218 -1.3573 -3.8055 16 6 2.6724 0.4194 -4.7690 17 6 3.4266 -0.2373 -5.8971 18 6 3.3091 0.2895 -7.1736 19 6 3.9897 -0.2847 -8.2288 20 6 4.7920 -1.3893 -8.0112 21 6 4.9084 -1.9155 -6.7401 22 6 4.2236 -1.3416 -5.6800 23 6 4.3681 -1.9514 -4.3100 24 8 3.9079 -1.0434 -3.3107 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9039 -0.5278 4.4375 29 1 2.9172 -1.1206 -1.0288 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0462 -2.1182 32 1 1.6639 0.6647 -5.1018 33 1 3.1884 1.3326 -4.4725 34 1 2.6827 1.1526 -7.3436 35 1 3.8954 0.1283 -9.2223 36 1 5.3260 -1.8406 -8.8343 37 1 5.5357 -2.7783 -6.5708 38 1 3.7800 -2.8677 -4.2589 39 1 5.4167 -2.1875 -4.1287 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703975624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:52 Heat of formation + Delta-G solvation = -42.112678 kcal Electronic energy + Delta-G solvation = -19223.814789 eV Core-core repulsion = 16323.052497 eV Total energy + Delta-G solvation = -2900.762292 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25024 -38.87504 -37.56111 -34.84560 -33.96816 -32.70201 -31.95657 -29.92300 -27.31347 -26.63249 -25.90602 -23.32335 -22.78026 -21.70992 -20.88114 -18.90387 -18.12975 -17.49201 -16.93276 -16.83404 -16.21323 -15.69033 -15.53132 -15.37746 -15.06730 -14.72377 -14.54190 -14.09138 -14.01516 -13.73880 -13.45804 -13.44405 -12.78739 -12.73148 -12.69043 -12.40962 -12.38665 -12.06254 -11.86283 -11.59008 -11.39461 -11.04502 -10.77123 -10.55579 -9.68734 -9.52174 -9.15438 -8.31354 -6.36328 0.38321 0.44214 1.30902 1.35726 1.46682 2.31219 2.75548 2.85487 3.03639 3.32187 3.73105 3.75507 3.95105 4.11333 4.18385 4.25463 4.29949 4.43483 4.47813 4.49593 4.61974 4.69394 4.70982 4.73189 4.77246 4.86778 4.93639 4.97118 5.04696 5.09611 5.18151 5.50296 5.51659 5.59295 5.63556 5.65792 5.98349 6.08936 6.22277 6.50543 6.64513 6.81718 7.30150 8.85433 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.046339 B = 0.003897 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.098388 B = 7183.713181 C = 7609.854283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.184 3.816 3 H -0.004 1.004 4 C -0.527 4.527 5 H 0.036 0.964 6 C 0.012 3.988 7 N -0.947 5.947 8 Si 0.957 3.043 9 H -0.263 1.263 10 H -0.297 1.297 11 H -0.250 1.250 12 N -0.680 5.680 13 C 0.066 3.934 14 C 0.098 3.902 15 H 0.066 0.934 16 C -0.103 4.103 17 C -0.090 4.090 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.136 4.136 23 C 0.098 3.902 24 O -0.393 6.393 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.032 0.968 28 H 0.267 0.733 29 H 0.338 0.662 30 H 0.095 0.905 31 H 0.023 0.977 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.067 0.933 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.922 2.667 -25.418 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.075 3.925 3 H 0.013 0.987 4 C -0.565 4.565 5 H 0.055 0.945 6 C -0.186 4.186 7 N -0.588 5.588 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.225 1.225 11 H -0.174 1.174 12 N -0.311 5.311 13 C -0.063 4.063 14 C 0.040 3.960 15 H 0.084 0.916 16 C -0.141 4.141 17 C -0.090 4.090 18 C -0.144 4.144 19 C -0.141 4.141 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.137 4.137 23 C 0.021 3.979 24 O -0.312 6.312 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.113 0.887 31 H 0.041 0.959 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.157 0.843 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.085 0.915 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.409 2.466 -25.239 25.398 hybrid contribution 0.456 0.709 0.827 1.181 sum 1.865 3.174 -24.411 24.687 Atomic orbital electron populations 1.21978 0.96923 1.01093 0.99121 1.19406 0.93045 0.92103 0.87986 0.98691 1.21421 1.31481 1.12697 0.90926 0.94549 1.25850 0.97291 1.00206 0.95213 1.70051 1.47555 1.42523 0.98626 0.85738 0.79163 0.79575 0.77210 1.18879 1.22511 1.17395 1.60493 1.33139 1.32638 1.04807 1.22089 1.00491 0.93651 0.90086 1.22147 0.84032 0.95918 0.93875 0.91613 1.21081 1.01641 0.98650 0.92708 1.19707 0.97928 0.95932 0.95466 1.21335 1.00625 1.00725 0.91738 1.21472 0.96584 0.96304 0.99758 1.21437 0.99171 0.96774 0.97173 1.21257 0.99499 1.00564 0.92521 1.20449 0.98998 0.97333 0.96889 1.21517 1.01307 0.91321 0.83713 1.88036 1.33096 1.63055 1.47057 0.92069 0.93039 0.94963 0.92411 0.84418 0.88676 0.95853 0.87689 0.89901 0.84297 0.83547 0.83537 0.84242 0.91482 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.89 71.98 0.64 -5.09 16 2 C 0.18 8.84 2.19 44.17 0.10 8.94 16 3 H 0.00 -0.22 6.86 -2.39 -0.02 -0.23 16 4 C -0.53 -30.95 9.17 25.60 0.23 -30.71 16 5 H 0.04 2.37 7.86 -2.91 -0.02 2.35 16 6 C 0.01 0.71 5.45 84.65 0.46 1.17 16 7 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 8 Si 0.96 45.57 24.37 68.60 1.67 47.24 16 9 H -0.26 -11.83 6.87 99.48 0.68 -11.15 16 10 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.25 -11.07 6.53 99.48 0.65 -10.42 16 12 N -0.68 -28.70 6.30 -495.44 -3.12 -31.82 16 13 C 0.07 2.20 5.21 86.31 0.45 2.65 16 14 C 0.10 2.81 2.89 30.59 0.09 2.90 16 15 H 0.07 1.91 8.08 -2.39 -0.02 1.89 16 16 C -0.10 -2.35 5.33 29.85 0.16 -2.19 16 17 C -0.09 -2.05 5.78 -19.84 -0.11 -2.16 16 18 C -0.13 -2.32 9.67 22.31 0.22 -2.10 16 19 C -0.12 -1.93 10.05 22.23 0.22 -1.71 16 20 C -0.13 -2.01 10.05 22.23 0.22 -1.78 16 21 C -0.12 -2.23 9.67 22.32 0.22 -2.02 16 22 C -0.14 -3.14 5.80 -19.86 -0.12 -3.26 16 23 C 0.10 2.43 6.66 71.22 0.47 2.90 16 24 O -0.39 -12.51 9.81 -148.98 -1.46 -13.98 16 25 H 0.06 2.17 7.45 -2.39 -0.02 2.15 16 26 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.03 1.40 3.27 -2.39 -0.01 1.39 16 28 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 29 H 0.34 15.38 7.64 -89.69 -0.68 14.70 16 30 H 0.10 2.79 7.44 -2.39 -0.02 2.77 16 31 H 0.02 0.81 8.05 -2.39 -0.02 0.79 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 1.91 8.10 -2.39 -0.02 1.89 16 34 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 35 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 37 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -69.06 309.62 0.91 -68.14 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.27 Total: 22.77 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 3.25 Total: -32.48 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -2.82 Total: -91.70 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -1.46 Total: -13.98 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.67 Total: 47.24 kcal Total: -69.06 0.91 -68.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703975624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.031 kcal (2) G-P(sol) polarization free energy of solvation -69.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds