Wall clock time and date at job start Mon Mar 30 2020 06:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00117 * 2 1 4 4 H 1.08998 * 112.85081 * 341.20031 * 3 2 1 5 5 C 1.53778 * 113.61373 * 112.49938 * 3 2 1 6 6 C 1.53788 * 87.07884 * 89.11976 * 5 3 2 7 7 H 1.09004 * 113.69054 * 270.86920 * 6 5 3 8 8 N 1.46893 * 113.61363 * 139.98186 * 6 5 3 9 9 C 1.46907 * 111.00272 * 107.50437 * 8 6 5 10 10 H 1.09001 * 109.46675 * 324.17806 * 9 8 6 11 11 C 1.50694 * 109.47299 * 84.18014 * 9 8 6 12 12 H 1.08004 * 120.00231 * 60.15856 * 11 9 8 13 13 C 1.37878 * 120.00259 * 240.15914 * 11 9 8 14 14 N 1.31518 * 120.00218 * 174.95095 * 13 11 9 15 15 Si 1.86807 * 119.99890 * 354.95471 * 13 11 9 16 16 H 1.48500 * 109.47179 * 84.74796 * 15 13 11 17 17 H 1.48497 * 109.47172 * 204.74869 * 15 13 11 18 18 H 1.48503 * 109.46746 * 324.75143 * 15 13 11 19 19 C 1.50702 * 109.47098 * 204.18325 * 9 8 6 20 20 C 1.38235 * 119.99563 * 133.67281 * 19 9 8 21 21 C 1.38239 * 119.99285 * 179.72504 * 20 19 9 22 22 C 1.38234 * 120.00466 * 0.27249 * 21 20 19 23 23 C 1.38240 * 119.99584 * 359.97438 * 22 21 20 24 24 C 1.38230 * 120.00054 * 359.97438 * 23 22 21 25 25 C 1.53774 * 87.08071 * 25.43064 * 6 5 3 26 26 H 1.08994 * 109.46732 * 59.99760 * 1 2 3 27 27 H 1.08998 * 109.46863 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46890 * 300.00178 * 1 2 3 29 29 H 1.09003 * 113.61748 * 334.57579 * 5 3 2 30 30 H 1.08998 * 113.61568 * 203.66628 * 5 3 2 31 31 H 1.00899 * 110.99928 * 231.45026 * 8 6 5 32 32 H 0.97001 * 119.99704 * 179.97438 * 14 13 11 33 33 H 1.07998 * 120.00568 * 359.97438 * 20 19 9 34 34 H 1.08007 * 119.99552 * 180.25789 * 21 20 19 35 35 H 1.07996 * 120.00350 * 179.97438 * 22 21 20 36 36 H 1.07999 * 119.99700 * 179.97438 * 23 22 21 37 37 H 1.08003 * 119.99986 * 179.97438 * 24 23 22 38 38 H 1.09003 * 113.61412 * 89.11619 * 25 6 5 39 39 H 1.08998 * 113.61612 * 220.01730 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 -0.3237 5 6 2.7534 1.6489 1.3018 6 6 4.0062 1.0330 0.6565 7 1 4.1099 -0.0372 0.8354 8 7 5.2397 1.7802 0.9359 9 6 6.0930 1.0518 1.8843 10 1 5.4680 0.5372 2.6141 11 6 6.9273 0.0434 1.1373 12 1 7.6139 0.3719 0.3710 13 6 6.8142 -1.2988 1.4320 14 7 7.4668 -2.1869 0.7145 15 14 5.7338 -1.8557 2.8506 16 1 4.3295 -1.9800 2.3841 17 1 6.2087 -3.1720 3.3474 18 1 5.8043 -0.8576 3.9479 19 6 6.9981 2.0247 2.5952 20 6 7.1494 1.9519 3.9673 21 6 7.9841 2.8407 4.6187 22 6 8.6630 3.8059 3.8987 23 6 8.5077 3.8819 2.5272 24 6 7.6739 2.9924 1.8757 25 6 3.3756 1.3719 -0.7045 26 1 -0.3632 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.3927 1.0963 2.1693 30 1 2.8389 2.7197 1.4863 31 1 5.7394 1.9848 0.0835 32 1 7.3875 -3.1311 0.9221 33 1 6.6187 1.1981 4.5299 34 1 8.1055 2.7812 5.6902 35 1 9.3147 4.5005 4.4076 36 1 9.0378 4.6362 1.9647 37 1 7.5522 3.0521 0.8042 38 1 3.6311 2.3671 -1.0685 39 1 3.5171 0.5958 -1.4566 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706485742.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:27 Heat of formation + Delta-G solvation = 3.356312 kcal Electronic energy + Delta-G solvation = -19677.636102 eV Core-core repulsion = 16778.845493 eV Total energy + Delta-G solvation = -2898.790609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.27653 -38.44603 -36.17005 -34.14138 -31.93961 -30.20745 -29.75323 -26.83285 -26.27270 -25.26748 -23.38181 -22.35242 -21.65606 -19.71612 -19.09910 -17.17021 -16.40154 -16.12326 -15.34884 -15.02128 -14.73377 -14.60468 -14.40735 -13.83883 -13.59070 -12.90167 -12.71401 -12.65063 -12.07587 -12.07053 -12.00315 -11.79222 -11.58807 -11.29188 -11.00822 -10.73839 -10.53871 -10.37546 -10.12629 -9.80886 -9.71000 -9.39290 -9.25914 -8.69413 -8.18722 -7.91285 -7.31786 -6.22176 -4.23998 2.14500 2.21372 3.22749 3.28873 3.30767 3.85331 4.29366 4.57978 4.94322 5.01485 5.11816 5.18904 5.33676 5.37094 5.44800 5.53301 5.55951 5.61882 5.64794 5.75024 5.87447 6.10232 6.13568 6.24766 6.27719 6.38209 6.42272 6.48786 6.66946 6.74687 6.82420 6.88653 7.17565 7.26995 7.41025 7.46232 7.58483 7.80069 8.04206 8.29198 8.52933 8.82530 9.40233 10.90269 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016505 B = 0.007155 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.045524 B = 3912.218282 C = 4803.701450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.060 3.940 4 H 0.069 0.931 5 C -0.149 4.149 6 C 0.081 3.919 7 H 0.078 0.922 8 N -0.675 5.675 9 C 0.203 3.797 10 H 0.051 0.949 11 C -0.535 4.535 12 H 0.077 0.923 13 C 0.081 3.919 14 N -0.887 5.887 15 Si 0.868 3.132 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.263 1.263 19 C -0.014 4.014 20 C -0.134 4.134 21 C -0.123 4.123 22 C -0.152 4.152 23 C -0.126 4.126 24 C -0.104 4.104 25 C -0.142 4.142 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.335 0.665 32 H 0.266 0.734 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.699 8.710 1.403 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C 0.002 3.998 4 H 0.087 0.913 5 C -0.188 4.188 6 C -0.030 4.030 7 H 0.096 0.904 8 N -0.305 5.305 9 C 0.096 3.904 10 H 0.069 0.931 11 C -0.574 4.574 12 H 0.095 0.905 13 C -0.124 4.124 14 N -0.524 5.524 15 Si 0.695 3.305 16 H -0.194 1.194 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.015 4.015 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.170 4.170 23 C -0.144 4.144 24 C -0.123 4.123 25 C -0.180 4.180 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.153 0.847 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.112 0.888 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.833 8.722 1.856 12.551 hybrid contribution -0.227 -1.089 0.248 1.140 sum -9.060 7.633 2.104 12.032 Atomic orbital electron populations 1.22756 0.81654 1.02414 0.99601 1.87948 1.19056 1.27044 1.94628 1.23016 0.94182 0.84412 0.98229 0.91280 1.23625 0.96927 1.01614 0.96609 1.22683 0.89578 0.97237 0.93513 0.90434 1.61147 1.06925 1.45664 1.16722 1.18695 0.90379 0.89621 0.91749 0.93132 1.21501 1.25054 0.90392 1.20425 0.90453 1.25089 0.94923 0.96674 0.95668 1.69893 1.41823 1.01782 1.38894 0.87027 0.81508 0.78238 0.83734 1.19419 1.21300 1.18826 1.20290 0.95496 0.93097 0.92641 1.21007 1.00228 0.99354 0.94627 1.20933 0.97965 0.96331 0.98897 1.20835 1.01777 0.99953 0.94436 1.21013 0.99340 0.99520 0.94507 1.20825 0.96715 0.95140 0.99609 1.23439 0.94169 1.02285 0.98153 0.94285 0.89923 0.94252 0.92007 0.88959 0.84701 0.92383 0.87187 0.87348 0.87461 0.87297 0.86745 0.88846 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.85 101.05 1.10 1.47 16 2 O -0.37 -6.02 10.63 -35.23 -0.37 -6.40 16 3 C 0.06 0.90 4.37 -25.92 -0.11 0.79 16 4 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 5 C -0.15 -2.46 7.71 -25.92 -0.20 -2.66 16 6 C 0.08 1.56 3.79 -66.90 -0.25 1.31 16 7 H 0.08 1.80 7.13 -51.93 -0.37 1.43 16 8 N -0.67 -13.60 5.91 -101.32 -0.60 -14.20 16 9 C 0.20 4.69 2.00 -70.01 -0.14 4.55 16 10 H 0.05 1.22 4.21 -51.93 -0.22 1.00 16 11 C -0.53 -14.40 8.62 -34.44 -0.30 -14.69 16 12 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 13 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 14 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 15 Si 0.87 21.35 26.36 -169.99 -4.48 16.87 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 18 H -0.26 -6.19 6.27 56.52 0.35 -5.84 16 19 C -0.01 -0.31 4.93 -104.62 -0.52 -0.82 16 20 C -0.13 -2.73 9.67 -39.58 -0.38 -3.11 16 21 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 22 C -0.15 -2.52 10.05 -39.58 -0.40 -2.92 16 23 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 24 C -0.10 -2.05 9.27 -39.59 -0.37 -2.42 16 25 C -0.14 -2.29 7.48 -25.92 -0.19 -2.49 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.33 6.63 7.71 -39.29 -0.30 6.33 16 32 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.11 2.23 7.56 -52.49 -0.40 1.83 16 34 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 35 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.11 2.16 7.44 -52.48 -0.39 1.77 16 38 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 321.11 15.07 4.84 4.84 Total: -1.00 -29.93 321.11 -8.42 -38.35 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.92 Total: 10.24 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -2.66 Total: -23.95 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.17 Total: -39.95 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.37 Total: -6.40 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.48 Total: 16.87 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.93 -8.42 -38.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706485742.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.707 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds