Wall clock time and date at job start Mon Mar 30 2020 06:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00117 * 2 1 4 4 H 1.08998 * 112.85081 * 341.20031 * 3 2 1 5 5 C 1.53778 * 113.61373 * 112.49938 * 3 2 1 6 6 C 1.53788 * 87.07884 * 89.11976 * 5 3 2 7 7 H 1.09004 * 113.69054 * 270.86920 * 6 5 3 8 8 N 1.46893 * 113.61363 * 139.98186 * 6 5 3 9 9 C 1.46907 * 111.00272 * 107.50437 * 8 6 5 10 10 H 1.09001 * 109.46675 * 324.17806 * 9 8 6 11 11 C 1.50694 * 109.47299 * 84.18014 * 9 8 6 12 12 H 1.08004 * 120.00231 * 60.15856 * 11 9 8 13 13 C 1.37878 * 120.00259 * 240.15914 * 11 9 8 14 14 N 1.31518 * 120.00218 * 174.95095 * 13 11 9 15 15 Si 1.86807 * 119.99890 * 354.95471 * 13 11 9 16 16 H 1.48500 * 109.47179 * 84.74796 * 15 13 11 17 17 H 1.48497 * 109.47172 * 204.74869 * 15 13 11 18 18 H 1.48503 * 109.46746 * 324.75143 * 15 13 11 19 19 C 1.50702 * 109.47098 * 204.18325 * 9 8 6 20 20 C 1.38235 * 119.99563 * 133.67281 * 19 9 8 21 21 C 1.38239 * 119.99285 * 179.72504 * 20 19 9 22 22 C 1.38234 * 120.00466 * 0.27249 * 21 20 19 23 23 C 1.38240 * 119.99584 * 359.97438 * 22 21 20 24 24 C 1.38230 * 120.00054 * 359.97438 * 23 22 21 25 25 C 1.53774 * 87.08071 * 25.43064 * 6 5 3 26 26 H 1.08994 * 109.46732 * 59.99760 * 1 2 3 27 27 H 1.08998 * 109.46863 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46890 * 300.00178 * 1 2 3 29 29 H 1.09003 * 113.61748 * 334.57579 * 5 3 2 30 30 H 1.08998 * 113.61568 * 203.66628 * 5 3 2 31 31 H 1.00899 * 110.99928 * 231.45026 * 8 6 5 32 32 H 0.97001 * 119.99704 * 179.97438 * 14 13 11 33 33 H 1.07998 * 120.00568 * 359.97438 * 20 19 9 34 34 H 1.08007 * 119.99552 * 180.25789 * 21 20 19 35 35 H 1.07996 * 120.00350 * 179.97438 * 22 21 20 36 36 H 1.07999 * 119.99700 * 179.97438 * 23 22 21 37 37 H 1.08003 * 119.99986 * 179.97438 * 24 23 22 38 38 H 1.09003 * 113.61412 * 89.11619 * 25 6 5 39 39 H 1.08998 * 113.61612 * 220.01730 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 -0.3237 5 6 2.7534 1.6489 1.3018 6 6 4.0062 1.0330 0.6565 7 1 4.1099 -0.0372 0.8354 8 7 5.2397 1.7802 0.9359 9 6 6.0930 1.0518 1.8843 10 1 5.4680 0.5372 2.6141 11 6 6.9273 0.0434 1.1373 12 1 7.6139 0.3719 0.3710 13 6 6.8142 -1.2988 1.4320 14 7 7.4668 -2.1869 0.7145 15 14 5.7338 -1.8557 2.8506 16 1 4.3295 -1.9800 2.3841 17 1 6.2087 -3.1720 3.3474 18 1 5.8043 -0.8576 3.9479 19 6 6.9981 2.0247 2.5952 20 6 7.1494 1.9519 3.9673 21 6 7.9841 2.8407 4.6187 22 6 8.6630 3.8059 3.8987 23 6 8.5077 3.8819 2.5272 24 6 7.6739 2.9924 1.8757 25 6 3.3756 1.3719 -0.7045 26 1 -0.3632 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.3927 1.0963 2.1693 30 1 2.8389 2.7197 1.4863 31 1 5.7394 1.9848 0.0835 32 1 7.3875 -3.1311 0.9221 33 1 6.6187 1.1981 4.5299 34 1 8.1055 2.7812 5.6902 35 1 9.3147 4.5005 4.4076 36 1 9.0378 4.6362 1.9647 37 1 7.5522 3.0521 0.8042 38 1 3.6311 2.3671 -1.0685 39 1 3.5171 0.5958 -1.4566 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706485742.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:26 Heat of formation + Delta-G solvation = -16.303798 kcal Electronic energy + Delta-G solvation = -19678.488628 eV Core-core repulsion = 16778.845493 eV Total energy + Delta-G solvation = -2899.643135 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63388 -39.87311 -37.53458 -35.77763 -33.95498 -31.65088 -31.21239 -28.50811 -27.46272 -26.59099 -24.99125 -23.87471 -23.08148 -21.36792 -20.46554 -19.21905 -17.75629 -17.47760 -16.76079 -16.61979 -16.09727 -16.04142 -15.85158 -15.28211 -14.95317 -14.85231 -14.24932 -14.10780 -13.73098 -13.55046 -13.38597 -13.23575 -13.02325 -12.74631 -12.66458 -12.15386 -12.09166 -11.88480 -11.80805 -11.49192 -11.27626 -11.14564 -10.77525 -10.43514 -9.62752 -9.43685 -9.02332 -8.41366 -6.44404 0.69337 0.75770 1.22283 1.24143 1.30918 2.21017 2.78910 2.92367 3.17945 3.62704 3.68395 3.79262 3.99322 4.17466 4.23712 4.30780 4.41681 4.43908 4.55095 4.57110 4.59197 4.62120 4.82322 4.85840 4.91555 4.91896 4.94181 5.08591 5.21391 5.29673 5.34525 5.40995 5.47287 5.76328 5.81393 5.98640 6.07071 6.33139 6.36273 6.45017 6.62599 6.78032 7.23009 8.74875 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016505 B = 0.007155 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.045524 B = 3912.218282 C = 4803.701450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.072 3.928 4 H 0.108 0.892 5 C -0.139 4.139 6 C 0.059 3.941 7 H 0.031 0.969 8 N -0.659 5.659 9 C 0.212 3.788 10 H 0.037 0.963 11 C -0.526 4.526 12 H 0.040 0.960 13 C 0.028 3.972 14 N -0.936 5.936 15 Si 0.922 3.078 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.247 1.247 19 C -0.047 4.047 20 C -0.156 4.156 21 C -0.122 4.122 22 C -0.142 4.142 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.136 4.136 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.110 0.890 31 H 0.334 0.666 32 H 0.266 0.734 33 H 0.102 0.898 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.580 11.430 2.690 15.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.014 3.986 4 H 0.126 0.874 5 C -0.178 4.178 6 C -0.052 4.052 7 H 0.049 0.951 8 N -0.287 5.287 9 C 0.103 3.897 10 H 0.055 0.945 11 C -0.565 4.565 12 H 0.059 0.941 13 C -0.172 4.172 14 N -0.576 5.576 15 Si 0.748 3.252 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.171 1.171 19 C -0.048 4.048 20 C -0.175 4.175 21 C -0.139 4.139 22 C -0.160 4.160 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.174 4.174 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.128 0.872 31 H 0.151 0.849 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.734 11.464 3.153 15.366 hybrid contribution 0.095 -1.828 -0.185 1.840 sum -9.639 9.636 2.967 13.948 Atomic orbital electron populations 1.23003 0.79251 1.03606 1.01226 1.87910 1.21850 1.28049 1.94707 1.22976 0.94235 0.85033 0.96364 0.87388 1.23581 0.95033 1.02129 0.97048 1.22801 0.90388 0.94878 0.97143 0.95121 1.61199 1.06626 1.44653 1.16252 1.18496 0.90071 0.89523 0.91575 0.94480 1.21708 1.23863 0.91385 1.19579 0.94136 1.25802 0.96401 0.96965 0.98036 1.70023 1.44439 1.02058 1.41062 0.86138 0.79564 0.78083 0.81446 1.19647 1.21019 1.17108 1.20226 0.96642 0.94390 0.93576 1.21128 1.01605 1.00449 0.94271 1.21299 0.96667 0.95383 1.00599 1.21332 1.00920 0.99582 0.94186 1.21398 0.98247 0.99145 0.95326 1.20931 0.97558 0.95675 0.99651 1.23457 0.94885 1.03031 0.95988 0.92163 0.89156 0.92991 0.92990 0.87196 0.84869 0.92475 0.87980 0.84229 0.83438 0.84070 0.87073 0.86300 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 10.85 113.37 1.23 1.75 16 2 O -0.41 -12.88 10.63 -148.98 -1.58 -14.47 16 3 C 0.07 2.03 4.37 31.12 0.14 2.16 16 4 H 0.11 2.23 7.87 -2.39 -0.02 2.21 16 5 C -0.14 -4.44 7.71 31.12 0.24 -4.20 16 6 C 0.06 2.31 3.79 45.44 0.17 2.48 16 7 H 0.03 1.50 7.13 -2.39 -0.02 1.49 16 8 N -0.66 -27.05 5.91 -474.48 -2.80 -29.86 16 9 C 0.21 10.06 2.00 43.42 0.09 10.15 16 10 H 0.04 1.84 4.21 -2.39 -0.01 1.83 16 11 C -0.53 -29.76 8.62 25.60 0.22 -29.54 16 12 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 13 C 0.03 1.62 5.47 84.65 0.46 2.08 16 14 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 15 Si 0.92 45.89 26.36 68.60 1.81 47.70 16 16 H -0.27 -13.43 7.11 99.48 0.71 -12.73 16 17 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 18 H -0.25 -11.50 6.27 99.48 0.62 -10.88 16 19 C -0.05 -2.05 4.93 -19.87 -0.10 -2.15 16 20 C -0.16 -6.23 9.67 22.27 0.22 -6.01 16 21 C -0.12 -3.91 10.05 22.27 0.22 -3.69 16 22 C -0.14 -4.14 10.05 22.27 0.22 -3.91 16 23 C -0.12 -3.89 10.05 22.27 0.22 -3.66 16 24 C -0.12 -4.62 9.27 22.27 0.21 -4.41 16 25 C -0.14 -4.29 7.48 31.12 0.23 -4.06 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.33 13.61 7.71 -89.69 -0.69 12.92 16 32 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 33 H 0.10 4.12 7.56 -2.91 -0.02 4.09 16 34 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 37 H 0.11 4.23 7.44 -2.91 -0.02 4.20 16 38 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -68.80 321.11 1.75 -67.04 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.26 Total: 31.09 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 3.78 Total: -43.01 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -2.50 Total: -88.36 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -1.58 Total: -14.47 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.81 Total: 47.70 kcal Total: -68.80 1.75 -67.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706485742.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.738 kcal (2) G-P(sol) polarization free energy of solvation -68.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds