Wall clock time and date at job start Mon Mar 30 2020 06:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99624 * 2 1 4 4 H 1.09001 * 112.85042 * 20.33870 * 3 2 1 5 5 C 1.53787 * 113.61069 * 151.53034 * 3 2 1 6 6 C 1.53782 * 87.08178 * 89.19998 * 5 3 2 7 7 H 1.09005 * 113.61082 * 270.80088 * 6 5 3 8 8 N 1.46891 * 113.61567 * 139.97822 * 6 5 3 9 9 C 1.46898 * 111.00268 * 154.99888 * 8 6 5 10 10 H 1.09002 * 109.46801 * 35.00240 * 9 8 6 11 11 C 1.50698 * 109.47250 * 275.00378 * 9 8 6 12 12 H 1.08003 * 119.99975 * 324.76557 * 11 9 8 13 13 C 1.37873 * 120.00157 * 144.76621 * 11 9 8 14 14 N 1.31517 * 120.00160 * 5.10939 * 13 11 9 15 15 Si 1.86797 * 120.00158 * 185.11375 * 13 11 9 16 16 H 1.48503 * 109.47251 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47574 * 119.99607 * 15 13 11 18 18 H 1.48503 * 109.47132 * 239.99964 * 15 13 11 19 19 C 1.50697 * 109.47492 * 154.99823 * 9 8 6 20 20 C 1.38239 * 119.99683 * 45.41380 * 19 9 8 21 21 C 1.38240 * 119.99791 * 179.76575 * 20 19 9 22 22 C 1.38232 * 120.00116 * 0.50649 * 21 20 19 23 23 C 1.38237 * 119.99874 * 359.74461 * 22 21 20 24 24 C 1.38232 * 120.00362 * 225.68605 * 19 9 8 25 25 C 1.53781 * 113.68706 * 249.06321 * 3 2 1 26 26 H 1.08999 * 109.46633 * 299.99551 * 1 2 3 27 27 H 1.08991 * 109.46854 * 60.00031 * 1 2 3 28 28 H 1.08998 * 109.46580 * 180.02562 * 1 2 3 29 29 H 1.09000 * 113.61071 * 203.74658 * 5 3 2 30 30 H 1.08997 * 113.61559 * 334.56783 * 5 3 2 31 31 H 1.00896 * 111.00265 * 278.95392 * 8 6 5 32 32 H 0.96999 * 120.00386 * 180.02562 * 14 13 11 33 33 H 1.08004 * 119.99895 * 0.02562 * 20 19 9 34 34 H 1.08001 * 119.99716 * 180.23851 * 21 20 19 35 35 H 1.07996 * 120.00327 * 179.72795 * 22 21 20 36 36 H 1.08001 * 119.99967 * 179.97438 * 23 22 21 37 37 H 1.07997 * 119.99803 * 0.02562 * 24 19 9 38 38 H 1.08994 * 113.61480 * 25.42838 * 25 3 2 39 39 H 1.09002 * 113.60720 * 156.32558 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3219 2.0753 0.3491 5 6 3.3924 1.3645 0.6717 6 6 3.9897 1.0427 -0.7083 7 1 4.0895 -0.0252 -0.9027 8 7 5.2156 1.7942 -1.0087 9 6 6.0458 1.0783 -1.9864 10 1 5.4034 0.5602 -2.6984 11 6 6.9132 0.0754 -1.2702 12 1 7.3076 0.3042 -0.2912 13 6 7.2033 -1.1342 -1.8649 14 7 6.8080 -1.3733 -3.0962 15 14 8.1577 -2.4337 -0.9215 16 1 8.4841 -1.9218 0.4337 17 1 7.3339 -3.6634 -0.8015 18 1 9.4146 -2.7488 -1.6470 19 6 6.9183 2.0629 -2.7214 20 6 7.5950 3.0439 -2.0209 21 6 8.3993 3.9442 -2.6945 22 6 8.5185 3.8699 -4.0697 23 6 7.8377 2.8922 -4.7707 24 6 7.0376 1.9887 -4.0965 25 6 2.7212 1.6653 -1.3153 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.6562 2.3553 1.0414 30 1 3.5521 0.5802 1.4117 31 1 4.9991 2.7254 -1.3312 32 1 7.0118 -2.2244 -3.5145 33 1 7.4987 3.1044 -0.9468 34 1 8.9310 4.7082 -2.1468 35 1 9.1433 4.5759 -4.5965 36 1 7.9306 2.8344 -5.8452 37 1 6.5051 1.2253 -4.6443 38 1 2.3396 1.1231 -2.1804 39 1 2.8015 2.7384 -1.4887 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706485743.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:28 Heat of formation + Delta-G solvation = -14.032180 kcal Electronic energy + Delta-G solvation = -19546.145778 eV Core-core repulsion = 16646.601147 eV Total energy + Delta-G solvation = -2899.544631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.62786 -39.80896 -37.45655 -35.67816 -33.69887 -31.52987 -31.07104 -28.21401 -27.42159 -26.54016 -25.10697 -23.73480 -22.98856 -21.63010 -20.48089 -18.46217 -17.63957 -17.39450 -16.70474 -16.63537 -16.07074 -15.92375 -15.72375 -15.17726 -15.05235 -14.42744 -14.13055 -13.94902 -13.72391 -13.35459 -13.26784 -13.19684 -12.88286 -12.67281 -12.54706 -12.28023 -11.99729 -11.93115 -11.69465 -11.45953 -11.37741 -11.00207 -10.55804 -10.42087 -9.56701 -9.29268 -8.95440 -8.09897 -6.20810 0.75418 0.78884 1.36117 1.38199 1.49751 2.40252 2.80524 3.06709 3.27403 3.63430 3.73884 3.80479 4.13721 4.25558 4.31205 4.34476 4.43821 4.47239 4.56492 4.57985 4.63635 4.82504 4.83342 4.90857 4.92495 4.98486 5.14442 5.25737 5.27548 5.32656 5.42160 5.49473 5.72967 5.81301 5.84474 6.12568 6.19991 6.36069 6.40276 6.49878 6.95284 7.06605 7.45863 8.92204 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.007081 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.971308 B = 3953.396826 C = 5266.294642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.074 3.926 4 H 0.105 0.895 5 C -0.121 4.121 6 C 0.079 3.921 7 H 0.052 0.948 8 N -0.669 5.669 9 C 0.246 3.754 10 H -0.002 1.002 11 C -0.493 4.493 12 H 0.050 0.950 13 C 0.013 3.987 14 N -0.916 5.916 15 Si 0.949 3.051 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.281 1.281 19 C -0.061 4.061 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.131 4.131 24 C -0.135 4.135 25 C -0.181 4.181 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.059 0.941 31 H 0.327 0.673 32 H 0.259 0.741 33 H 0.118 0.882 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 9.780 2.742 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C 0.016 3.984 4 H 0.122 0.878 5 C -0.159 4.159 6 C -0.032 4.032 7 H 0.070 0.930 8 N -0.298 5.298 9 C 0.138 3.862 10 H 0.016 0.984 11 C -0.532 4.532 12 H 0.068 0.932 13 C -0.187 4.187 14 N -0.556 5.556 15 Si 0.776 3.224 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.062 4.062 20 C -0.139 4.139 21 C -0.145 4.145 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.154 4.154 25 C -0.221 4.221 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.068 0.932 33 H 0.136 0.864 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.941 9.216 3.157 11.962 hybrid contribution -0.156 -1.186 -0.763 1.419 sum -7.097 8.030 2.394 10.981 Atomic orbital electron populations 1.22994 0.79383 1.03644 1.01050 1.87910 1.21698 1.27881 1.94660 1.22960 0.94552 0.85017 0.95868 0.87767 1.23308 0.93212 1.02910 0.96480 1.22696 0.87210 0.96501 0.96791 0.92997 1.60617 1.17281 1.04332 1.47613 1.18084 0.90212 0.89288 0.88606 0.98403 1.21237 1.29851 0.99732 1.02349 0.93181 1.25711 0.97025 1.00256 0.95685 1.70058 1.47793 1.24345 1.13357 0.85631 0.78350 0.79247 0.79214 1.19166 1.20778 1.20740 1.20587 0.98294 0.93939 0.93408 1.21038 0.97593 0.95393 0.99891 1.21392 0.98744 0.99423 0.94897 1.21288 1.00869 0.99409 0.94474 1.21279 0.97585 0.95792 1.00254 1.21046 1.00923 0.98756 0.94651 1.24196 0.98278 1.01620 0.97973 0.92140 0.93364 0.89009 0.87030 0.92251 0.85517 0.93163 0.86406 0.83923 0.83635 0.85135 0.89128 0.93130 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.85 113.37 1.23 1.76 16 2 O -0.40 -12.66 10.64 -148.98 -1.58 -14.24 16 3 C 0.07 2.09 4.36 31.12 0.14 2.23 16 4 H 0.10 2.17 7.88 -2.39 -0.02 2.16 16 5 C -0.12 -3.86 7.71 31.12 0.24 -3.62 16 6 C 0.08 3.17 3.84 45.45 0.17 3.35 16 7 H 0.05 2.61 7.81 -2.38 -0.02 2.59 16 8 N -0.67 -28.42 5.94 -474.49 -2.82 -31.24 16 9 C 0.25 12.50 2.14 43.42 0.09 12.59 16 10 H 0.00 -0.11 6.87 -2.39 -0.02 -0.13 16 11 C -0.49 -27.87 8.37 25.60 0.21 -27.65 16 12 H 0.05 2.89 7.82 -2.91 -0.02 2.87 16 13 C 0.01 0.72 5.45 84.65 0.46 1.18 16 14 N -0.92 -54.40 12.84 21.45 0.28 -54.13 16 15 Si 0.95 45.77 29.54 68.60 2.03 47.79 16 16 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 17 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 18 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 19 C -0.06 -2.83 4.65 -19.87 -0.09 -2.92 16 20 C -0.12 -4.85 9.08 22.27 0.20 -4.65 16 21 C -0.13 -4.19 10.05 22.27 0.22 -3.96 16 22 C -0.14 -4.51 10.05 22.27 0.22 -4.28 16 23 C -0.13 -4.77 10.05 22.27 0.22 -4.54 16 24 C -0.13 -6.07 9.67 22.27 0.22 -5.85 16 25 C -0.18 -5.79 7.53 31.12 0.23 -5.56 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.11 3.05 8.14 -2.39 -0.02 3.04 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.33 12.36 7.60 -89.70 -0.68 11.68 16 32 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.12 4.68 7.89 -2.91 -0.02 4.66 16 34 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 36 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 37 H 0.09 4.47 8.00 -2.91 -0.02 4.44 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.11 2.88 7.82 -2.39 -0.02 2.86 16 Total: -1.00 -66.39 327.10 2.02 -64.37 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.34 Total: 29.38 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 3.78 Total: -41.93 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -2.55 Total: -85.37 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -1.58 Total: -14.24 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -66.39 2.02 -64.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706485743.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.340 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds