Wall clock time and date at job start Mon Mar 30 2020 06:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99825 * 2 1 4 4 H 1.09000 * 112.84949 * 18.79878 * 3 2 1 5 5 C 1.53776 * 113.61590 * 150.00475 * 3 2 1 6 6 C 1.53780 * 87.08719 * 89.19744 * 5 3 2 7 7 H 1.08994 * 113.61081 * 270.80487 * 6 5 3 8 8 N 1.46896 * 113.61708 * 139.97889 * 6 5 3 9 9 C 1.46897 * 110.99935 * 156.52792 * 8 6 5 10 10 C 1.50703 * 109.47281 * 179.97438 * 9 8 6 11 11 C 1.38628 * 119.75187 * 269.72707 * 10 9 8 12 12 C 1.37622 * 120.24666 * 179.75984 * 11 10 9 13 13 C 1.40708 * 119.74337 * 0.49301 * 12 11 10 14 14 C 1.41404 * 120.24367 * 179.78731 * 13 12 11 15 15 H 1.08004 * 119.99501 * 24.36327 * 14 13 12 16 16 C 1.39937 * 119.99958 * 204.36398 * 14 13 12 17 17 N 1.30819 * 120.00246 * 17.85986 * 16 14 13 18 18 Si 1.86799 * 119.99983 * 197.85186 * 16 14 13 19 19 H 1.48508 * 109.46891 * 90.00465 * 18 16 14 20 20 H 1.48498 * 109.47604 * 209.99917 * 18 16 14 21 21 H 1.48501 * 109.47373 * 330.00707 * 18 16 14 22 22 C 1.40716 * 119.51578 * 359.76112 * 13 12 11 23 23 C 1.37623 * 119.74289 * 0.02562 * 22 13 12 24 24 C 1.53784 * 87.17086 * 25.38978 * 6 5 3 25 25 H 1.08995 * 109.47884 * 60.00310 * 1 2 3 26 26 H 1.09003 * 109.46979 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47115 * 299.99895 * 1 2 3 28 28 H 1.09001 * 113.61284 * 334.64131 * 5 3 2 29 29 H 1.09001 * 113.61288 * 203.74862 * 5 3 2 30 30 H 1.00899 * 110.99925 * 32.57728 * 8 6 5 31 31 H 1.09000 * 109.47159 * 300.00243 * 9 8 6 32 32 H 1.09003 * 109.47197 * 60.00390 * 9 8 6 33 33 H 1.08002 * 119.87482 * 0.02562 * 11 10 9 34 34 H 1.07998 * 120.12439 * 180.23305 * 12 11 10 35 35 H 0.97004 * 120.00540 * 180.02562 * 17 16 14 36 36 H 1.07994 * 120.12892 * 180.02562 * 22 13 12 37 37 H 1.07995 * 119.87207 * 179.97438 * 23 22 13 38 38 H 1.08995 * 113.61386 * 89.15719 * 24 6 5 39 39 H 1.08997 * 113.61435 * 220.06268 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3136 2.0789 0.3237 5 6 3.3755 1.3720 0.7044 6 6 4.0062 1.0353 -0.6571 7 1 4.1106 -0.0346 -0.8373 8 7 5.2392 1.7837 -0.9356 9 6 6.0762 1.0744 -1.9125 10 6 7.3288 1.8709 -2.1730 11 6 7.3472 2.8103 -3.1922 12 6 8.4840 3.5468 -3.4357 13 6 9.6336 3.3358 -2.6523 14 6 10.8088 4.0834 -2.8963 15 1 10.7447 5.0490 -3.3757 16 6 12.0548 3.5720 -2.5165 17 7 12.1891 2.2951 -2.2659 18 14 13.5266 4.7127 -2.3676 19 1 13.6016 5.2458 -0.9835 20 1 14.7692 3.9605 -2.6762 21 1 13.3789 5.8388 -3.3244 22 6 9.6051 2.3758 -1.6238 23 6 8.4558 1.6540 -1.3953 24 6 2.7534 1.6496 -1.3037 25 1 -0.3635 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.5175 0.5950 1.4556 29 1 3.6303 2.3668 1.0696 30 1 5.7513 1.9661 -0.0856 31 1 6.3438 0.0943 -1.5179 32 1 5.5234 0.9526 -2.8440 33 1 6.4648 2.9679 -3.7946 34 1 8.4950 4.2808 -4.2279 35 1 13.0527 1.9406 -2.0023 36 1 10.4816 2.2061 -1.0163 37 1 8.4318 0.9164 -0.6068 38 1 2.8379 2.7204 -1.4884 39 1 2.3940 1.0963 -2.1713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706562141.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:15 Heat of formation + Delta-G solvation = -10.292622 kcal Electronic energy + Delta-G solvation = -18563.821327 eV Core-core repulsion = 15664.438856 eV Total energy + Delta-G solvation = -2899.382471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.61425 -37.68567 -36.40774 -34.22152 -32.84547 -29.79975 -29.19256 -26.99565 -26.27206 -25.65111 -23.72019 -22.45840 -20.94614 -19.90737 -19.40128 -17.25789 -16.80410 -15.84694 -15.46399 -15.26677 -14.86747 -14.79863 -14.19539 -13.91117 -13.45603 -13.33399 -12.49312 -12.39533 -12.31579 -12.06056 -11.90498 -11.66870 -11.54555 -11.34057 -11.04926 -10.92617 -10.67119 -10.51524 -10.38015 -10.15302 -9.63137 -9.48628 -9.34577 -9.10377 -8.01921 -7.40939 -7.25855 -6.73775 -4.31980 2.76977 3.08018 3.11965 3.12535 3.21180 3.50479 3.94854 4.50119 4.55011 4.64929 4.77057 4.91123 5.04109 5.15642 5.24057 5.32325 5.41768 5.73323 5.75245 5.80582 5.89741 5.95742 6.01319 6.18386 6.26635 6.37507 6.44314 6.46497 6.98116 7.06615 7.10672 7.31539 7.41918 7.51345 7.65432 7.80055 7.93908 8.09133 8.18908 8.34182 8.67568 8.92978 9.01588 10.20864 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.059784 B = 0.003113 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.236811 B = 8993.761308 C = 9116.546030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.372 6.372 3 C 0.060 3.940 4 H 0.073 0.927 5 C -0.144 4.144 6 C 0.065 3.935 7 H 0.070 0.930 8 N -0.674 5.674 9 C 0.124 3.876 10 C -0.213 4.213 11 C -0.069 4.069 12 C -0.228 4.228 13 C 0.112 3.888 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.794 5.794 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.166 4.166 23 C -0.096 4.096 24 C -0.143 4.143 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.340 0.660 31 H 0.019 0.981 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.280 0.720 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.333 -2.567 5.085 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.290 6.290 3 C 0.001 3.999 4 H 0.091 0.909 5 C -0.181 4.181 6 C -0.045 4.045 7 H 0.088 0.912 8 N -0.305 5.305 9 C -0.004 4.004 10 C -0.214 4.214 11 C -0.088 4.088 12 C -0.248 4.248 13 C 0.109 3.891 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.420 5.420 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.186 1.186 22 C -0.186 4.186 23 C -0.115 4.115 24 C -0.182 4.182 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.159 0.841 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.326 -2.526 4.660 16.217 hybrid contribution 0.898 -0.128 0.551 1.061 sum -14.428 -2.654 5.211 15.568 Atomic orbital electron populations 1.22783 0.81160 1.02597 0.99924 1.87878 1.19514 1.26983 1.94666 1.23046 0.94186 0.84691 0.97942 0.90860 1.23466 0.94568 1.02806 0.97309 1.22921 0.90556 0.96220 0.94808 0.91204 1.60786 1.06738 1.47257 1.15707 1.20594 0.91826 0.93210 0.94772 1.18917 0.94175 1.05030 1.03302 1.20330 0.96193 0.95663 0.96590 1.20972 0.95389 1.05375 1.03070 1.17628 0.91857 0.90586 0.89020 1.19605 0.90544 1.04280 1.34885 0.90484 1.25907 1.00680 0.94983 0.92608 1.69832 1.26117 1.12681 1.33342 0.86328 0.79801 0.80953 0.79709 1.19300 1.20373 1.18635 1.21278 0.96928 1.00426 0.99920 1.20528 0.93693 0.99009 0.98224 1.23589 0.95752 1.02134 0.96693 0.94001 0.89747 0.94108 0.90960 0.88311 0.84056 0.96271 0.92127 0.89510 0.89137 0.90945 0.86564 0.89930 0.88522 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.35 16 2 O -0.37 -4.34 10.63 -35.23 -0.37 -4.72 16 3 C 0.06 0.65 4.38 -25.83 -0.11 0.54 16 4 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 5 C -0.14 -1.64 7.50 -25.92 -0.19 -1.83 16 6 C 0.07 0.89 4.05 -66.90 -0.27 0.62 16 7 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 8 N -0.67 -10.83 6.54 -107.13 -0.70 -11.53 16 9 C 0.12 2.25 5.66 -4.98 -0.03 2.22 16 10 C -0.21 -4.67 5.42 -104.33 -0.56 -5.24 16 11 C -0.07 -1.58 9.67 -39.66 -0.38 -1.97 16 12 C -0.23 -5.73 9.80 -38.87 -0.38 -6.11 16 13 C 0.11 3.02 5.58 -106.82 -0.60 2.42 16 14 C -0.46 -12.47 9.05 -37.74 -0.34 -12.81 16 15 H 0.08 2.00 7.91 -52.48 -0.42 1.58 16 16 C 0.08 1.92 5.14 -17.35 -0.09 1.83 16 17 N -0.79 -20.76 10.95 55.55 0.61 -20.15 16 18 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 23 C -0.10 -2.24 9.67 -39.66 -0.38 -2.62 16 24 C -0.14 -1.76 7.73 -25.82 -0.20 -1.96 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.34 5.45 8.55 -39.29 -0.34 5.11 16 31 H 0.02 0.34 8.07 -51.93 -0.42 -0.08 16 32 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 34 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 36 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 37 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -27.96 326.19 -9.46 -37.42 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.09 Total: 8.49 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: -2.79 Total: -28.24 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: -0.09 Total: -31.68 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.37 Total: -4.72 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.96 -9.46 -37.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706562141.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.130 kcal (2) G-P(sol) polarization free energy of solvation -27.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds