Wall clock time and date at job start Mon Mar 30 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99825 * 2 1 4 4 H 1.09000 * 112.84949 * 18.79878 * 3 2 1 5 5 C 1.53776 * 113.61590 * 150.00475 * 3 2 1 6 6 C 1.53780 * 87.08719 * 89.19744 * 5 3 2 7 7 H 1.08994 * 113.61081 * 270.80487 * 6 5 3 8 8 N 1.46896 * 113.61708 * 139.97889 * 6 5 3 9 9 C 1.46897 * 110.99935 * 156.52792 * 8 6 5 10 10 C 1.50703 * 109.47281 * 179.97438 * 9 8 6 11 11 C 1.38628 * 119.75187 * 269.72707 * 10 9 8 12 12 C 1.37622 * 120.24666 * 179.75984 * 11 10 9 13 13 C 1.40708 * 119.74337 * 0.49301 * 12 11 10 14 14 C 1.41404 * 120.24367 * 179.78731 * 13 12 11 15 15 H 1.08004 * 119.99501 * 24.36327 * 14 13 12 16 16 C 1.39937 * 119.99958 * 204.36398 * 14 13 12 17 17 N 1.30819 * 120.00246 * 17.85986 * 16 14 13 18 18 Si 1.86799 * 119.99983 * 197.85186 * 16 14 13 19 19 H 1.48508 * 109.46891 * 90.00465 * 18 16 14 20 20 H 1.48498 * 109.47604 * 209.99917 * 18 16 14 21 21 H 1.48501 * 109.47373 * 330.00707 * 18 16 14 22 22 C 1.40716 * 119.51578 * 359.76112 * 13 12 11 23 23 C 1.37623 * 119.74289 * 0.02562 * 22 13 12 24 24 C 1.53784 * 87.17086 * 25.38978 * 6 5 3 25 25 H 1.08995 * 109.47884 * 60.00310 * 1 2 3 26 26 H 1.09003 * 109.46979 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47115 * 299.99895 * 1 2 3 28 28 H 1.09001 * 113.61284 * 334.64131 * 5 3 2 29 29 H 1.09001 * 113.61288 * 203.74862 * 5 3 2 30 30 H 1.00899 * 110.99925 * 32.57728 * 8 6 5 31 31 H 1.09000 * 109.47159 * 300.00243 * 9 8 6 32 32 H 1.09003 * 109.47197 * 60.00390 * 9 8 6 33 33 H 1.08002 * 119.87482 * 0.02562 * 11 10 9 34 34 H 1.07998 * 120.12439 * 180.23305 * 12 11 10 35 35 H 0.97004 * 120.00540 * 180.02562 * 17 16 14 36 36 H 1.07994 * 120.12892 * 180.02562 * 22 13 12 37 37 H 1.07995 * 119.87207 * 179.97438 * 23 22 13 38 38 H 1.08995 * 113.61386 * 89.15719 * 24 6 5 39 39 H 1.08997 * 113.61435 * 220.06268 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3136 2.0789 0.3237 5 6 3.3755 1.3720 0.7044 6 6 4.0062 1.0353 -0.6571 7 1 4.1106 -0.0346 -0.8373 8 7 5.2392 1.7837 -0.9356 9 6 6.0762 1.0744 -1.9125 10 6 7.3288 1.8709 -2.1730 11 6 7.3472 2.8103 -3.1922 12 6 8.4840 3.5468 -3.4357 13 6 9.6336 3.3358 -2.6523 14 6 10.8088 4.0834 -2.8963 15 1 10.7447 5.0490 -3.3757 16 6 12.0548 3.5720 -2.5165 17 7 12.1891 2.2951 -2.2659 18 14 13.5266 4.7127 -2.3676 19 1 13.6016 5.2458 -0.9835 20 1 14.7692 3.9605 -2.6762 21 1 13.3789 5.8388 -3.3244 22 6 9.6051 2.3758 -1.6238 23 6 8.4558 1.6540 -1.3953 24 6 2.7534 1.6496 -1.3037 25 1 -0.3635 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.5175 0.5950 1.4556 29 1 3.6303 2.3668 1.0696 30 1 5.7513 1.9661 -0.0856 31 1 6.3438 0.0943 -1.5179 32 1 5.5234 0.9526 -2.8440 33 1 6.4648 2.9679 -3.7946 34 1 8.4950 4.2808 -4.2279 35 1 13.0527 1.9406 -2.0023 36 1 10.4816 2.2061 -1.0163 37 1 8.4318 0.9164 -0.6068 38 1 2.8379 2.7204 -1.4884 39 1 2.3940 1.0963 -2.1713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706562141.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:14 Heat of formation + Delta-G solvation = -26.520889 kcal Electronic energy + Delta-G solvation = -18564.525038 eV Core-core repulsion = 15664.438856 eV Total energy + Delta-G solvation = -2900.086182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56425 -39.47571 -37.44940 -35.88932 -34.37531 -31.56009 -31.09293 -28.20580 -27.41680 -26.61810 -25.17631 -23.73035 -22.86392 -21.64361 -20.43229 -19.20408 -17.72728 -17.24126 -16.76900 -16.32505 -16.13587 -15.84747 -15.70916 -15.57977 -15.03287 -14.65736 -14.19697 -13.79356 -13.63381 -13.28538 -13.21184 -12.99698 -12.89631 -12.83362 -12.60361 -12.34728 -12.28231 -11.94015 -11.54669 -11.46003 -11.27785 -11.07607 -10.98881 -10.43700 -9.41233 -9.27274 -9.14054 -8.62957 -6.32157 0.95492 1.17373 1.38108 1.51454 1.52166 2.21359 2.70520 2.76064 3.44053 3.62326 3.76066 3.82561 3.93671 4.21471 4.32216 4.33171 4.40865 4.57372 4.58976 4.61641 4.67453 4.81536 4.85898 4.86428 4.90461 5.05466 5.07199 5.17351 5.20378 5.28248 5.39434 5.49447 5.72927 5.97620 6.12001 6.22201 6.27075 6.34462 6.41392 6.55217 6.72065 6.95876 7.05872 8.34178 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.059784 B = 0.003113 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.236811 B = 8993.761308 C = 9116.546030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.068 3.932 4 H 0.096 0.904 5 C -0.137 4.137 6 C 0.058 3.942 7 H 0.061 0.939 8 N -0.676 5.676 9 C 0.132 3.868 10 C -0.200 4.200 11 C -0.072 4.072 12 C -0.244 4.244 13 C 0.079 3.921 14 C -0.502 4.502 15 H 0.073 0.927 16 C 0.034 3.966 17 N -0.827 5.827 18 Si 0.983 3.017 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.190 4.190 23 C -0.098 4.098 24 C -0.142 4.142 25 H 0.048 0.952 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.341 0.659 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.288 0.712 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.748 -2.501 5.720 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.009 3.991 4 H 0.113 0.887 5 C -0.175 4.175 6 C -0.052 4.052 7 H 0.079 0.921 8 N -0.307 5.307 9 C 0.003 3.997 10 C -0.201 4.201 11 C -0.091 4.091 12 C -0.264 4.264 13 C 0.076 3.924 14 C -0.532 4.532 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.453 5.453 18 Si 0.803 3.197 19 H -0.187 1.187 20 H -0.192 1.192 21 H -0.183 1.183 22 C -0.209 4.209 23 C -0.117 4.117 24 C -0.180 4.180 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.772 -2.470 5.295 17.760 hybrid contribution 1.161 -0.246 0.350 1.238 sum -15.611 -2.716 5.644 16.821 Atomic orbital electron populations 1.22990 0.79381 1.03766 1.00947 1.87846 1.21560 1.27413 1.94704 1.22988 0.94359 0.85166 0.96543 0.88658 1.23442 0.94617 1.03279 0.96114 1.23017 0.89696 0.95528 0.96984 0.92149 1.60733 1.07060 1.47445 1.15442 1.20472 0.90456 0.92838 0.95897 1.19321 0.95166 1.03952 1.01679 1.20627 0.96294 0.95202 0.96963 1.21172 0.95817 1.06150 1.03261 1.17977 0.92882 0.91550 0.89960 1.19838 0.91761 1.04639 1.36958 0.90839 1.26763 1.03235 0.96429 0.91603 1.69881 1.27325 1.14253 1.33842 0.85198 0.75999 0.78660 0.79794 1.18654 1.19207 1.18258 1.21254 0.97539 1.01760 1.00366 1.20768 0.93265 0.98815 0.98828 1.23567 0.95212 1.01879 0.97353 0.93294 0.88654 0.92721 0.90829 0.87434 0.84078 0.95699 0.91480 0.87062 0.88743 0.90190 0.88251 0.87903 0.88557 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.85 113.37 1.23 1.57 16 2 O -0.40 -8.36 10.63 -148.98 -1.58 -9.94 16 3 C 0.07 1.31 4.38 31.18 0.14 1.44 16 4 H 0.10 1.43 7.87 -2.39 -0.02 1.41 16 5 C -0.14 -2.81 7.50 31.12 0.23 -2.58 16 6 C 0.06 1.46 4.05 45.44 0.18 1.64 16 7 H 0.06 1.67 7.88 -2.39 -0.02 1.65 16 8 N -0.68 -20.46 6.54 -492.86 -3.22 -23.69 16 9 C 0.13 4.55 5.66 85.56 0.48 5.03 16 10 C -0.20 -8.57 5.42 -19.67 -0.11 -8.67 16 11 C -0.07 -3.26 9.67 22.22 0.21 -3.05 16 12 C -0.24 -12.45 9.80 22.73 0.22 -12.22 16 13 C 0.08 4.38 5.58 -21.29 -0.12 4.26 16 14 C -0.50 -27.93 9.05 23.46 0.21 -27.72 16 15 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 16 C 0.03 1.77 5.14 85.26 0.44 2.21 16 17 N -0.83 -44.26 10.95 21.82 0.24 -44.02 16 18 Si 0.98 39.02 29.59 68.60 2.03 41.05 16 19 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 20 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 22 C -0.19 -10.22 8.70 22.73 0.20 -10.02 16 23 C -0.10 -4.58 9.67 22.22 0.21 -4.36 16 24 C -0.14 -3.18 7.73 31.18 0.24 -2.94 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 0.58 8.14 -2.38 -0.02 0.57 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.34 10.30 8.55 -89.69 -0.77 9.54 16 31 H 0.02 0.84 8.07 -2.39 -0.02 0.82 16 32 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 33 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 34 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 35 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 36 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 37 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 38 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -60.78 326.19 1.51 -59.27 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.26 Total: 32.73 kcal Atomic # 6 Polarization: -59.19 SS G_CDS: 3.78 Total: -55.40 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: -2.98 Total: -67.71 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -1.58 Total: -9.94 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -60.78 1.51 -59.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706562141.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.753 kcal (2) G-P(sol) polarization free energy of solvation -60.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds