Wall clock time and date at job start Mon Mar 30 2020 06:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 112.96169 * 2 1 4 4 C 1.53939 * 113.76064 * 131.64971 * 2 1 3 5 5 C 1.53937 * 86.34255 * 138.14748 * 4 2 1 6 6 N 1.47958 * 113.85928 * 228.25874 * 2 1 3 7 7 C 1.46903 * 111.00067 * 108.08738 * 6 2 1 8 8 C 1.53003 * 109.47163 * 169.99988 * 7 6 2 9 9 O 1.42906 * 109.47113 * 64.99952 * 8 7 6 10 10 C 1.35669 * 116.99876 * 180.02562 * 9 8 7 11 11 C 1.39315 * 119.81748 * 359.72065 * 10 9 8 12 12 C 1.36443 * 120.18243 * 179.76437 * 11 10 9 13 13 C 1.40835 * 119.81000 * 0.51216 * 12 11 10 14 14 C 1.41219 * 120.17536 * 179.72011 * 13 12 11 15 15 H 1.08002 * 119.99402 * 204.56537 * 14 13 12 16 16 C 1.39886 * 120.00258 * 24.56899 * 14 13 12 17 17 N 1.30884 * 119.99809 * 17.92582 * 16 14 13 18 18 Si 1.86797 * 120.00064 * 197.92037 * 16 14 13 19 19 H 1.48503 * 109.47174 * 60.00137 * 18 16 14 20 20 H 1.48504 * 109.47012 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47312 * 299.99923 * 18 16 14 22 22 C 1.40834 * 119.64163 * 359.74494 * 13 12 11 23 23 C 1.36438 * 119.81440 * 359.97438 * 22 13 12 24 24 H 1.09004 * 109.46899 * 309.66285 * 1 2 3 25 25 H 1.08999 * 109.47119 * 69.66386 * 1 2 3 26 26 H 1.09005 * 109.47034 * 189.66622 * 1 2 3 27 27 H 1.09004 * 113.73165 * 252.50432 * 4 2 1 28 28 H 1.08999 * 113.73394 * 23.68314 * 4 2 1 29 29 H 1.09003 * 113.75478 * 90.59684 * 5 4 2 30 30 H 1.08997 * 113.75802 * 221.85314 * 5 4 2 31 31 H 1.08999 * 109.47139 * 289.99984 * 7 6 2 32 32 H 1.09003 * 109.46991 * 50.00028 * 7 6 2 33 33 H 1.09000 * 109.47270 * 184.99655 * 8 7 6 34 34 H 1.09000 * 109.47418 * 305.00143 * 8 7 6 35 35 H 1.07997 * 119.90986 * 0.02562 * 11 10 9 36 36 H 1.07996 * 120.09425 * 180.25304 * 12 11 10 37 37 H 0.97006 * 119.99905 * 180.02562 * 17 16 14 38 38 H 1.08005 * 120.08851 * 180.02562 * 22 13 12 39 39 H 1.07996 * 119.90798 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9552 1.0036 0.0000 4 6 2.1502 -0.9363 1.0528 5 6 3.1579 -1.3361 -0.0401 6 7 2.1284 -0.9009 -1.0097 7 6 2.7308 -0.1340 -2.1083 8 6 3.5496 -1.0729 -2.9967 9 8 2.6777 -2.0140 -3.6261 10 6 3.2489 -2.9253 -4.4531 11 6 4.6268 -2.9071 -4.6579 12 6 5.2096 -3.8231 -5.4843 13 6 4.4128 -4.7818 -6.1395 14 6 5.0073 -5.7297 -7.0012 15 1 4.4232 -6.1867 -7.7863 16 6 6.3525 -6.0768 -6.8376 17 7 6.9638 -5.8140 -5.7105 18 14 7.2763 -6.9155 -8.2278 19 1 7.2757 -6.0358 -9.4241 20 1 8.6762 -7.1755 -7.8058 21 1 6.6117 -8.2016 -8.5587 22 6 3.0200 -4.7898 -5.9312 23 6 2.4536 -3.8705 -5.0971 24 1 -0.3633 0.6560 0.7911 25 1 -0.3633 0.3571 -0.9636 26 1 -0.3633 -1.0131 0.1726 27 1 2.6015 -0.4117 1.8949 28 1 1.4907 -1.7473 1.3615 29 1 4.0592 -0.7231 -0.0517 30 1 3.3700 -2.4048 -0.0721 31 1 1.9433 0.3318 -2.7007 32 1 3.3820 0.6380 -1.6983 33 1 4.0679 -0.4915 -3.7592 34 1 4.2796 -1.6053 -2.3870 35 1 5.2358 -2.1686 -4.1578 36 1 6.2784 -3.8102 -5.6388 37 1 7.8967 -6.0544 -5.5973 38 1 2.4021 -5.5221 -6.4297 39 1 1.3856 -3.8750 -4.9366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706839142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:06 Heat of formation + Delta-G solvation = 9.969582 kcal Electronic energy + Delta-G solvation = -18975.987313 eV Core-core repulsion = 16077.483477 eV Total energy + Delta-G solvation = -2898.503836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.07860 -38.55087 -36.30457 -33.38442 -32.00795 -29.91022 -29.57604 -28.95387 -26.71326 -24.66111 -23.54918 -22.27462 -20.89461 -20.10569 -19.55714 -17.30494 -16.91958 -16.43156 -15.45524 -15.10386 -14.96246 -14.38649 -14.04320 -13.87797 -13.38778 -13.26438 -12.75893 -12.46751 -12.29643 -11.91220 -11.81855 -11.76350 -11.49409 -11.41791 -11.09446 -11.00274 -10.92893 -10.65607 -10.51500 -10.36775 -9.80697 -9.73596 -9.30108 -8.94961 -8.73509 -7.59042 -6.93551 -6.67671 -4.19572 2.83286 3.02461 3.09778 3.12899 3.27223 3.79869 3.98464 4.18564 4.42600 4.65803 4.67459 5.02750 5.13338 5.19103 5.30896 5.38441 5.51484 5.56238 5.61740 5.72192 5.75345 5.78923 5.81494 5.97556 6.06579 6.17254 6.20008 6.35820 6.44381 6.79198 6.95591 7.08950 7.12282 7.34143 7.48651 7.62346 7.97595 8.05562 8.22152 8.52897 8.72466 8.95424 9.06216 10.26968 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.043355 B = 0.003668 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.672736 B = 7631.294436 C = 7897.156782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.022 3.978 3 H 0.074 0.926 4 C -0.142 4.142 5 C -0.001 4.001 6 N -0.461 5.461 7 C 0.024 3.976 8 C 0.075 3.925 9 O -0.314 6.314 10 C -0.004 4.004 11 C -0.177 4.177 12 C -0.134 4.134 13 C 0.086 3.914 14 C -0.465 4.465 15 H 0.076 0.924 16 C 0.075 3.925 17 N -0.802 5.802 18 Si 0.907 3.093 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.266 1.266 22 C -0.195 4.195 23 C -0.114 4.114 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.279 0.721 38 H 0.099 0.901 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 10.248 9.960 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.087 4.087 3 H 0.091 0.909 4 C -0.179 4.179 5 C -0.130 4.130 6 N -0.185 5.185 7 C -0.104 4.104 8 C -0.002 4.002 9 O -0.229 6.229 10 C -0.047 4.047 11 C -0.196 4.196 12 C -0.153 4.153 13 C 0.084 3.916 14 C -0.495 4.495 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.428 5.428 18 Si 0.731 3.269 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.215 4.215 23 C -0.133 4.133 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.014 9.747 9.761 14.677 hybrid contribution 1.467 0.299 -0.312 1.529 sum -3.547 10.046 9.448 14.240 Atomic orbital electron populations 1.21562 0.93372 1.02313 1.01529 1.23489 0.96916 0.95655 0.92684 0.90859 1.23424 0.98477 0.99570 0.96475 1.23848 0.94322 1.02675 0.92164 1.68658 1.19587 1.26453 1.03775 1.22680 0.98623 0.94817 0.94328 1.22360 0.92447 0.90701 0.94670 1.85902 1.34992 1.42727 1.59311 1.18625 0.91567 0.95266 0.99272 1.20607 0.92915 1.02046 1.04019 1.20930 1.00123 0.94609 0.99650 1.17574 0.90785 0.91619 0.91661 1.19426 0.94952 1.21057 1.14104 0.90599 1.25858 0.97885 0.94727 0.95660 1.69842 1.12158 1.37924 1.22918 0.86398 0.78335 0.80170 0.81947 1.18955 1.20478 1.19086 1.20598 0.95542 1.01337 1.04013 1.19609 0.97407 0.96304 0.99998 0.92493 0.92371 0.91830 0.91372 0.89097 0.91550 0.89136 0.89837 0.93037 0.92997 0.93237 0.89004 0.86224 0.91044 0.88304 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 10.01 37.16 0.37 -0.90 16 2 C 0.02 0.23 3.94 -66.66 -0.26 -0.03 16 3 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 4 C -0.14 -1.40 7.84 -25.80 -0.20 -1.60 16 5 C 0.00 -0.02 7.03 -2.76 -0.02 -0.04 16 6 N -0.46 -6.37 6.02 -230.70 -1.39 -7.76 16 7 C 0.02 0.33 5.20 -3.82 -0.02 0.31 16 8 C 0.07 1.27 4.88 37.16 0.18 1.45 16 9 O -0.31 -6.74 10.07 -18.71 -0.19 -6.92 16 10 C 0.00 -0.09 6.71 -38.78 -0.26 -0.35 16 11 C -0.18 -4.29 8.96 -39.83 -0.36 -4.65 16 12 C -0.13 -3.56 8.64 -39.25 -0.34 -3.90 16 13 C 0.09 2.35 5.57 -106.80 -0.60 1.75 16 14 C -0.47 -12.61 9.04 -37.83 -0.34 -12.95 16 15 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 16 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 17 N -0.80 -21.15 10.96 55.54 0.61 -20.54 16 18 Si 0.91 19.02 29.60 -169.99 -5.03 13.99 16 19 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 C -0.20 -4.97 9.74 -39.25 -0.38 -5.35 16 23 C -0.11 -2.77 9.92 -39.83 -0.40 -3.17 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.67 7.98 -51.93 -0.41 0.25 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.91 7.99 -51.93 -0.41 0.49 16 29 H 0.07 0.72 7.78 -51.93 -0.40 0.31 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.57 7.69 -51.93 -0.40 0.17 16 33 H 0.05 0.84 7.64 -51.93 -0.40 0.44 16 34 H 0.05 0.85 6.93 -51.93 -0.36 0.49 16 35 H 0.09 1.99 6.27 -52.49 -0.33 1.66 16 36 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 37 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 38 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 39 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 319.85 15.07 4.82 4.82 Total: -1.00 -29.27 319.85 -9.84 -39.11 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.95 Total: 4.91 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -2.71 Total: -27.60 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: -0.78 Total: -28.30 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.19 Total: -6.92 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.27 -9.84 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706839142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.084 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds