Wall clock time and date at job start Mon Mar 30 2020 06:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 112.96169 * 2 1 4 4 C 1.53939 * 113.76064 * 131.64971 * 2 1 3 5 5 C 1.53937 * 86.34255 * 138.14748 * 4 2 1 6 6 N 1.47958 * 113.85928 * 228.25874 * 2 1 3 7 7 C 1.46903 * 111.00067 * 108.08738 * 6 2 1 8 8 C 1.53003 * 109.47163 * 169.99988 * 7 6 2 9 9 O 1.42906 * 109.47113 * 64.99952 * 8 7 6 10 10 C 1.35669 * 116.99876 * 180.02562 * 9 8 7 11 11 C 1.39315 * 119.81748 * 359.72065 * 10 9 8 12 12 C 1.36443 * 120.18243 * 179.76437 * 11 10 9 13 13 C 1.40835 * 119.81000 * 0.51216 * 12 11 10 14 14 C 1.41219 * 120.17536 * 179.72011 * 13 12 11 15 15 H 1.08002 * 119.99402 * 204.56537 * 14 13 12 16 16 C 1.39886 * 120.00258 * 24.56899 * 14 13 12 17 17 N 1.30884 * 119.99809 * 17.92582 * 16 14 13 18 18 Si 1.86797 * 120.00064 * 197.92037 * 16 14 13 19 19 H 1.48503 * 109.47174 * 60.00137 * 18 16 14 20 20 H 1.48504 * 109.47012 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47312 * 299.99923 * 18 16 14 22 22 C 1.40834 * 119.64163 * 359.74494 * 13 12 11 23 23 C 1.36438 * 119.81440 * 359.97438 * 22 13 12 24 24 H 1.09004 * 109.46899 * 309.66285 * 1 2 3 25 25 H 1.08999 * 109.47119 * 69.66386 * 1 2 3 26 26 H 1.09005 * 109.47034 * 189.66622 * 1 2 3 27 27 H 1.09004 * 113.73165 * 252.50432 * 4 2 1 28 28 H 1.08999 * 113.73394 * 23.68314 * 4 2 1 29 29 H 1.09003 * 113.75478 * 90.59684 * 5 4 2 30 30 H 1.08997 * 113.75802 * 221.85314 * 5 4 2 31 31 H 1.08999 * 109.47139 * 289.99984 * 7 6 2 32 32 H 1.09003 * 109.46991 * 50.00028 * 7 6 2 33 33 H 1.09000 * 109.47270 * 184.99655 * 8 7 6 34 34 H 1.09000 * 109.47418 * 305.00143 * 8 7 6 35 35 H 1.07997 * 119.90986 * 0.02562 * 11 10 9 36 36 H 1.07996 * 120.09425 * 180.25304 * 12 11 10 37 37 H 0.97006 * 119.99905 * 180.02562 * 17 16 14 38 38 H 1.08005 * 120.08851 * 180.02562 * 22 13 12 39 39 H 1.07996 * 119.90798 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9552 1.0036 0.0000 4 6 2.1502 -0.9363 1.0528 5 6 3.1579 -1.3361 -0.0401 6 7 2.1284 -0.9009 -1.0097 7 6 2.7308 -0.1340 -2.1083 8 6 3.5496 -1.0729 -2.9967 9 8 2.6777 -2.0140 -3.6261 10 6 3.2489 -2.9253 -4.4531 11 6 4.6268 -2.9071 -4.6579 12 6 5.2096 -3.8231 -5.4843 13 6 4.4128 -4.7818 -6.1395 14 6 5.0073 -5.7297 -7.0012 15 1 4.4232 -6.1867 -7.7863 16 6 6.3525 -6.0768 -6.8376 17 7 6.9638 -5.8140 -5.7105 18 14 7.2763 -6.9155 -8.2278 19 1 7.2757 -6.0358 -9.4241 20 1 8.6762 -7.1755 -7.8058 21 1 6.6117 -8.2016 -8.5587 22 6 3.0200 -4.7898 -5.9312 23 6 2.4536 -3.8705 -5.0971 24 1 -0.3633 0.6560 0.7911 25 1 -0.3633 0.3571 -0.9636 26 1 -0.3633 -1.0131 0.1726 27 1 2.6015 -0.4117 1.8949 28 1 1.4907 -1.7473 1.3615 29 1 4.0592 -0.7231 -0.0517 30 1 3.3700 -2.4048 -0.0721 31 1 1.9433 0.3318 -2.7007 32 1 3.3820 0.6380 -1.6983 33 1 4.0679 -0.4915 -3.7592 34 1 4.2796 -1.6053 -2.3870 35 1 5.2358 -2.1686 -4.1578 36 1 6.2784 -3.8102 -5.6388 37 1 7.8967 -6.0544 -5.5973 38 1 2.4021 -5.5221 -6.4297 39 1 1.3856 -3.8750 -4.9366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706839142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:06 Heat of formation + Delta-G solvation = -7.513700 kcal Electronic energy + Delta-G solvation = -18976.745445 eV Core-core repulsion = 16077.483477 eV Total energy + Delta-G solvation = -2899.261968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08685 -40.25894 -38.11278 -35.27292 -33.19529 -31.53763 -31.01245 -30.57720 -27.93999 -26.55252 -24.40366 -23.70862 -22.79050 -21.74507 -20.43877 -19.26775 -18.65017 -17.50293 -17.15613 -16.42738 -16.08586 -15.83240 -15.68414 -15.40650 -14.85568 -14.26409 -14.21448 -13.96756 -13.93554 -13.68589 -13.17628 -12.98006 -12.81617 -12.73903 -12.62214 -12.34126 -12.28923 -12.09042 -11.67648 -11.63732 -11.54668 -11.26448 -11.17247 -10.84100 -9.66446 -9.56824 -8.89201 -8.59387 -6.21894 0.94816 1.04820 1.39301 1.50320 1.54874 2.23055 2.64307 2.73194 2.92836 3.58395 3.70390 3.81522 3.92018 4.17449 4.27383 4.30356 4.35046 4.38100 4.43119 4.46346 4.59660 4.69453 4.80378 4.87530 4.92024 4.99718 5.01613 5.03299 5.15288 5.18786 5.37291 5.38241 5.51642 5.56843 5.67066 5.98341 6.06112 6.16878 6.25166 6.57430 6.82027 6.95453 7.12619 8.37354 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.043355 B = 0.003668 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.672736 B = 7631.294436 C = 7897.156782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.025 3.975 3 H 0.092 0.908 4 C -0.130 4.130 5 C -0.008 4.008 6 N -0.498 5.498 7 C 0.032 3.968 8 C 0.067 3.933 9 O -0.323 6.323 10 C 0.002 3.998 11 C -0.178 4.178 12 C -0.154 4.154 13 C 0.054 3.946 14 C -0.502 4.502 15 H 0.076 0.924 16 C 0.034 3.966 17 N -0.833 5.833 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.204 4.204 23 C -0.124 4.124 24 H 0.080 0.920 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.287 0.713 38 H 0.109 0.891 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 11.393 10.710 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.084 4.084 3 H 0.110 0.890 4 C -0.168 4.168 5 C -0.136 4.136 6 N -0.222 5.222 7 C -0.097 4.097 8 C -0.009 4.009 9 O -0.238 6.238 10 C -0.042 4.042 11 C -0.197 4.197 12 C -0.174 4.174 13 C 0.052 3.948 14 C -0.532 4.532 15 H 0.094 0.906 16 C -0.180 4.180 17 N -0.460 5.460 18 Si 0.804 3.196 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.184 1.184 22 C -0.224 4.224 23 C -0.142 4.142 24 H 0.099 0.901 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.936 10.909 10.533 15.947 hybrid contribution 1.361 0.034 -0.427 1.427 sum -3.575 10.944 10.105 15.319 Atomic orbital electron populations 1.21570 0.93059 1.02081 1.01944 1.23595 0.97173 0.96167 0.91456 0.88980 1.23356 0.97494 0.99345 0.96584 1.23889 0.95178 1.01614 0.92940 1.68650 1.20613 1.28088 1.04834 1.22651 0.98704 0.94372 0.93954 1.22701 0.92812 0.90296 0.95100 1.85906 1.36264 1.42862 1.58787 1.18759 0.91389 0.95277 0.98775 1.20796 0.93520 1.01940 1.03457 1.20911 0.99613 0.95724 1.01142 1.17935 0.91852 0.92402 0.92629 1.19697 0.96437 1.22185 1.14857 0.90592 1.26733 0.98140 0.95099 0.98024 1.69896 1.12808 1.38640 1.24609 0.85247 0.77147 0.79018 0.78230 1.18562 1.19257 1.18406 1.20797 0.95199 1.01993 1.04396 1.19879 0.98571 0.96123 0.99669 0.90127 0.93201 0.93090 0.88929 0.89614 0.90126 0.91412 0.90006 0.89934 0.92184 0.93610 0.86751 0.87539 0.90274 0.87269 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 10.01 71.98 0.72 -1.54 16 2 C 0.02 0.46 3.94 45.02 0.18 0.63 16 3 H 0.09 1.38 7.79 -2.39 -0.02 1.37 16 4 C -0.13 -2.27 7.84 31.24 0.25 -2.02 16 5 C -0.01 -0.17 7.03 86.41 0.61 0.44 16 6 N -0.50 -12.93 6.02 -883.79 -5.32 -18.25 16 7 C 0.03 0.79 5.20 86.30 0.45 1.24 16 8 C 0.07 2.17 4.88 71.98 0.35 2.52 16 9 O -0.32 -13.60 10.07 -89.85 -0.90 -14.51 16 10 C 0.00 0.10 6.71 22.79 0.15 0.25 16 11 C -0.18 -8.70 8.96 22.11 0.20 -8.50 16 12 C -0.15 -8.43 8.64 22.49 0.19 -8.23 16 13 C 0.05 3.03 5.57 -21.28 -0.12 2.91 16 14 C -0.50 -27.86 9.04 23.40 0.21 -27.65 16 15 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 16 C 0.03 1.74 5.13 85.23 0.44 2.18 16 17 N -0.83 -44.60 10.96 21.82 0.24 -44.36 16 18 Si 0.98 39.00 29.60 68.60 2.03 41.03 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 20 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 C -0.20 -10.57 9.74 22.48 0.22 -10.35 16 23 C -0.12 -6.01 9.92 22.11 0.22 -5.79 16 24 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 1.01 7.98 -2.38 -0.02 0.99 16 27 H 0.09 1.17 8.14 -2.38 -0.02 1.16 16 28 H 0.09 1.58 7.99 -2.39 -0.02 1.56 16 29 H 0.08 1.56 7.78 -2.39 -0.02 1.54 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.08 1.56 7.69 -2.39 -0.02 1.54 16 33 H 0.06 1.85 7.64 -2.39 -0.02 1.83 16 34 H 0.05 1.52 6.93 -2.39 -0.02 1.51 16 35 H 0.11 4.91 6.27 -2.91 -0.02 4.89 16 36 H 0.11 6.00 6.16 -2.91 -0.02 5.98 16 37 H 0.29 13.89 8.30 -92.70 -0.77 13.12 16 38 H 0.11 5.25 8.06 -2.91 -0.02 5.22 16 39 H 0.12 5.07 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -63.60 319.85 1.13 -62.47 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 1.02 Total: 27.53 kcal Atomic # 6 Polarization: -57.98 SS G_CDS: 4.07 Total: -53.91 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -5.08 Total: -62.61 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.90 Total: -14.51 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -63.60 1.13 -62.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706839142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.958 kcal (2) G-P(sol) polarization free energy of solvation -63.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds