Wall clock time and date at job start Mon Mar 30 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.46861 * 2 1 4 4 C 1.52998 * 109.46973 * 120.00413 * 2 1 3 5 5 C 1.50700 * 109.46680 * 184.99881 * 4 2 1 6 6 H 1.07998 * 120.00426 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99910 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00072 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00005 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46949 * 90.00522 * 9 7 5 11 11 H 1.48505 * 109.46888 * 210.00372 * 9 7 5 12 12 H 1.48491 * 109.47055 * 330.00464 * 9 7 5 13 13 N 1.46893 * 109.46920 * 240.00450 * 2 1 3 14 14 C 1.46896 * 111.00275 * 83.97011 * 13 2 1 15 15 H 1.08997 * 109.43803 * 325.57228 * 14 13 2 16 16 C 1.53075 * 109.43584 * 85.44468 * 14 13 2 17 17 C 1.53406 * 108.30081 * 168.26479 * 16 14 13 18 18 O 1.42838 * 108.37486 * 295.28302 * 17 16 14 19 19 C 1.35838 * 117.85837 * 49.18174 * 18 17 16 20 20 C 1.39149 * 118.49783 * 162.94014 * 19 18 17 21 21 C 1.37972 * 120.21329 * 179.45625 * 20 19 18 22 22 C 1.38292 * 119.95812 * 0.52561 * 21 20 19 23 23 C 1.38103 * 119.98021 * 359.58109 * 22 21 20 24 24 C 1.38374 * 121.80654 * 342.79184 * 19 18 17 25 25 H 1.09004 * 109.46981 * 304.75474 * 1 2 3 26 26 H 1.08999 * 109.47273 * 64.75803 * 1 2 3 27 27 H 1.08998 * 109.46835 * 184.75579 * 1 2 3 28 28 H 1.09002 * 109.47263 * 305.00046 * 4 2 1 29 29 H 1.08999 * 109.47023 * 65.00223 * 4 2 1 30 30 H 0.96999 * 120.00528 * 179.97438 * 8 7 5 31 31 H 1.00898 * 110.99886 * 207.92582 * 13 2 1 32 32 H 1.08997 * 109.69638 * 287.95966 * 16 14 13 33 33 H 1.08994 * 109.69852 * 48.56145 * 16 14 13 34 34 H 1.09002 * 109.69165 * 55.00076 * 17 16 14 35 35 H 1.08994 * 109.68677 * 175.56369 * 17 16 14 36 36 H 1.08001 * 119.89282 * 359.72980 * 20 19 18 37 37 H 1.07997 * 120.01971 * 180.27743 * 21 20 19 38 38 H 1.08002 * 120.00952 * 179.84849 * 22 21 20 39 39 H 1.08010 * 119.83808 * 180.21415 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0790 -0.0855 0.5395 7 6 4.2304 -1.1928 2.3581 8 7 3.5765 -1.8371 3.2998 9 14 6.0921 -1.0603 2.4371 10 1 6.4698 0.1623 3.1905 11 1 6.6446 -2.2555 3.1239 12 1 6.6417 -0.9826 1.0598 13 7 2.0197 -0.6924 -1.1994 14 6 2.0594 0.2166 -2.3527 15 1 1.2304 0.9213 -2.2878 16 6 3.3825 0.9862 -2.3494 17 6 3.5292 1.6979 -3.7004 18 8 3.6364 0.7060 -4.7226 19 6 2.7209 -0.2974 -4.7319 20 6 2.5766 -1.0538 -5.8909 21 6 1.6652 -2.0887 -5.9356 22 6 0.8843 -2.3695 -4.8294 23 6 1.0234 -1.6194 -3.6781 24 6 1.9400 -0.5824 -3.6257 25 1 -0.3633 0.5859 0.8444 26 1 -0.3634 0.4382 -0.9295 27 1 -0.3633 -1.0241 0.0852 28 1 1.6054 -0.2619 2.1370 29 1 1.7517 -1.7716 1.2054 30 1 4.0608 -2.2439 4.0352 31 1 2.9249 -1.1062 -1.0339 32 1 3.3775 1.7220 -1.5453 33 1 4.2109 0.2922 -2.2079 34 1 2.6540 2.3212 -3.8842 35 1 4.4264 2.3168 -3.6939 36 1 3.1830 -0.8328 -6.7568 37 1 1.5590 -2.6766 -6.8353 38 1 0.1689 -3.1778 -4.8643 39 1 0.4147 -1.8429 -2.8143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709974074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:47 Heat of formation + Delta-G solvation = -27.325909 kcal Electronic energy + Delta-G solvation = -19853.844521 eV Core-core repulsion = 16953.723431 eV Total energy + Delta-G solvation = -2900.121090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55823 -37.28777 -36.99351 -33.70802 -32.16935 -30.48077 -30.03208 -28.63367 -27.44476 -24.37136 -23.54891 -22.90601 -21.90939 -19.78743 -19.50893 -17.57254 -16.52119 -16.37055 -15.87412 -15.20680 -14.86706 -14.64785 -14.22808 -13.83577 -13.56141 -13.26690 -13.01782 -12.62424 -12.53102 -11.97302 -11.82764 -11.55543 -11.34602 -11.31233 -11.11991 -11.02549 -10.77930 -10.69975 -10.54086 -10.33280 -10.08957 -9.31545 -9.10369 -8.59211 -8.42856 -7.98510 -7.71853 -6.05988 -4.09331 1.52418 1.63915 3.27047 3.34494 3.36366 3.41751 3.94828 4.40170 4.67362 4.85525 4.90282 5.00388 5.22145 5.22868 5.28466 5.35835 5.46098 5.62250 5.69138 5.74045 5.79441 5.90668 6.06329 6.14435 6.17964 6.23406 6.32646 6.46848 6.50086 6.71760 6.81508 6.87019 6.89501 6.98552 7.47421 7.59101 7.60340 7.92721 7.98682 8.19632 8.32776 8.96572 9.55182 11.04854 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.005759 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.763564 B = 4860.418166 C = 5287.768376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.030 0.970 4 C 0.021 3.979 5 C -0.524 4.524 6 H 0.052 0.948 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.670 5.670 14 C 0.130 3.870 15 H 0.082 0.918 16 C -0.189 4.189 17 C 0.067 3.933 18 O -0.321 6.321 19 C 0.130 3.870 20 C -0.161 4.161 21 C -0.092 4.092 22 C -0.164 4.164 23 C -0.051 4.051 24 C -0.145 4.145 25 H 0.048 0.952 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.021 0.979 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.359 0.641 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.070 3.968 -15.340 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 H 0.048 0.952 4 C -0.016 4.016 5 C -0.562 4.562 6 H 0.070 0.930 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.303 5.303 14 C 0.020 3.980 15 H 0.100 0.900 16 C -0.228 4.228 17 C -0.009 4.009 18 O -0.235 6.235 19 C 0.085 3.915 20 C -0.180 4.180 21 C -0.110 4.110 22 C -0.182 4.182 23 C -0.069 4.069 24 C -0.146 4.146 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.181 0.819 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.503 3.627 -15.416 16.465 hybrid contribution 1.818 0.635 0.645 2.031 sum -2.685 4.262 -14.770 15.606 Atomic orbital electron populations 1.21830 0.96695 1.01460 0.99481 1.21646 0.93273 0.95953 0.91314 0.95215 1.19266 0.95437 0.96205 0.90694 1.21150 0.92169 1.34594 1.08317 0.93017 1.24976 0.98162 0.95152 0.95724 1.69953 1.35518 1.35499 1.11919 0.86660 0.85997 0.77567 0.78174 1.20758 1.21167 1.19922 1.60620 1.34508 1.31727 1.03436 1.20298 0.95732 0.92491 0.89515 0.89996 1.23012 1.00370 1.01751 0.97702 1.22923 1.02721 0.88976 0.86292 1.85942 1.50060 1.35265 1.52252 1.18789 0.89720 0.89533 0.93496 1.20475 1.02340 0.98698 0.96473 1.20849 0.95318 0.96381 0.98466 1.21063 1.01736 1.01497 0.93902 1.21014 0.96000 0.92550 0.97328 1.19938 0.99761 1.00554 0.94367 0.93322 0.94402 0.92593 0.96040 0.95560 0.92924 0.81920 0.89618 0.90032 0.92092 0.87876 0.85868 0.86036 0.86273 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.41 37.16 0.35 -1.99 16 2 C 0.09 1.72 2.41 -67.71 -0.16 1.56 16 3 H 0.03 0.59 7.30 -51.93 -0.38 0.21 16 4 C 0.02 0.53 4.58 -27.88 -0.13 0.40 16 5 C -0.52 -13.98 8.12 -34.44 -0.28 -14.26 16 6 H 0.05 1.33 7.47 -52.49 -0.39 0.94 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.67 -12.34 5.27 -100.88 -0.53 -12.87 16 14 C 0.13 2.06 2.39 -68.79 -0.16 1.89 16 15 H 0.08 1.26 7.02 -51.93 -0.36 0.89 16 16 C -0.19 -2.81 5.46 -26.48 -0.14 -2.96 16 17 C 0.07 0.84 7.03 37.37 0.26 1.11 16 18 O -0.32 -4.79 10.27 -19.23 -0.20 -4.99 16 19 C 0.13 1.98 6.47 -39.19 -0.25 1.73 16 20 C -0.16 -2.17 9.94 -39.34 -0.39 -2.57 16 21 C -0.09 -1.12 10.04 -39.66 -0.40 -1.52 16 22 C -0.16 -2.12 10.04 -39.61 -0.40 -2.51 16 23 C -0.05 -0.75 9.27 -39.53 -0.37 -1.12 16 24 C -0.14 -2.26 5.56 -104.44 -0.58 -2.84 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.58 7.30 -51.93 -0.38 0.20 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.36 7.43 6.79 -39.29 -0.27 7.16 16 32 H 0.09 1.26 7.67 -51.93 -0.40 0.86 16 33 H 0.08 1.36 7.90 -51.93 -0.41 0.95 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.13 2.04 7.70 -52.48 -0.40 1.63 16 LS Contribution 316.36 15.07 4.77 4.77 Total: -1.00 -28.89 316.36 -8.93 -37.82 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.93 Total: 5.94 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -2.75 Total: -21.47 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.21 Total: -38.27 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.20 Total: -4.99 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.89 -8.93 -37.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709974074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.493 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds