Wall clock time and date at job start Mon Mar 30 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.46861 * 2 1 4 4 C 1.52998 * 109.46973 * 120.00413 * 2 1 3 5 5 C 1.50700 * 109.46680 * 184.99881 * 4 2 1 6 6 H 1.07998 * 120.00426 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99910 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00072 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00005 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46949 * 90.00522 * 9 7 5 11 11 H 1.48505 * 109.46888 * 210.00372 * 9 7 5 12 12 H 1.48491 * 109.47055 * 330.00464 * 9 7 5 13 13 N 1.46893 * 109.46920 * 240.00450 * 2 1 3 14 14 C 1.46896 * 111.00275 * 83.97011 * 13 2 1 15 15 H 1.08997 * 109.43803 * 325.57228 * 14 13 2 16 16 C 1.53075 * 109.43584 * 85.44468 * 14 13 2 17 17 C 1.53406 * 108.30081 * 168.26479 * 16 14 13 18 18 O 1.42838 * 108.37486 * 295.28302 * 17 16 14 19 19 C 1.35838 * 117.85837 * 49.18174 * 18 17 16 20 20 C 1.39149 * 118.49783 * 162.94014 * 19 18 17 21 21 C 1.37972 * 120.21329 * 179.45625 * 20 19 18 22 22 C 1.38292 * 119.95812 * 0.52561 * 21 20 19 23 23 C 1.38103 * 119.98021 * 359.58109 * 22 21 20 24 24 C 1.38374 * 121.80654 * 342.79184 * 19 18 17 25 25 H 1.09004 * 109.46981 * 304.75474 * 1 2 3 26 26 H 1.08999 * 109.47273 * 64.75803 * 1 2 3 27 27 H 1.08998 * 109.46835 * 184.75579 * 1 2 3 28 28 H 1.09002 * 109.47263 * 305.00046 * 4 2 1 29 29 H 1.08999 * 109.47023 * 65.00223 * 4 2 1 30 30 H 0.96999 * 120.00528 * 179.97438 * 8 7 5 31 31 H 1.00898 * 110.99886 * 207.92582 * 13 2 1 32 32 H 1.08997 * 109.69638 * 287.95966 * 16 14 13 33 33 H 1.08994 * 109.69852 * 48.56145 * 16 14 13 34 34 H 1.09002 * 109.69165 * 55.00076 * 17 16 14 35 35 H 1.08994 * 109.68677 * 175.56369 * 17 16 14 36 36 H 1.08001 * 119.89282 * 359.72980 * 20 19 18 37 37 H 1.07997 * 120.01971 * 180.27743 * 21 20 19 38 38 H 1.08002 * 120.00952 * 179.84849 * 22 21 20 39 39 H 1.08010 * 119.83808 * 180.21415 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0790 -0.0855 0.5395 7 6 4.2304 -1.1928 2.3581 8 7 3.5765 -1.8371 3.2998 9 14 6.0921 -1.0603 2.4371 10 1 6.4698 0.1623 3.1905 11 1 6.6446 -2.2555 3.1239 12 1 6.6417 -0.9826 1.0598 13 7 2.0197 -0.6924 -1.1994 14 6 2.0594 0.2166 -2.3527 15 1 1.2304 0.9213 -2.2878 16 6 3.3825 0.9862 -2.3494 17 6 3.5292 1.6979 -3.7004 18 8 3.6364 0.7060 -4.7226 19 6 2.7209 -0.2974 -4.7319 20 6 2.5766 -1.0538 -5.8909 21 6 1.6652 -2.0887 -5.9356 22 6 0.8843 -2.3695 -4.8294 23 6 1.0234 -1.6194 -3.6781 24 6 1.9400 -0.5824 -3.6257 25 1 -0.3633 0.5859 0.8444 26 1 -0.3634 0.4382 -0.9295 27 1 -0.3633 -1.0241 0.0852 28 1 1.6054 -0.2619 2.1370 29 1 1.7517 -1.7716 1.2054 30 1 4.0608 -2.2439 4.0352 31 1 2.9249 -1.1062 -1.0339 32 1 3.3775 1.7220 -1.5453 33 1 4.2109 0.2922 -2.2079 34 1 2.6540 2.3212 -3.8842 35 1 4.4264 2.3168 -3.6939 36 1 3.1830 -0.8328 -6.7568 37 1 1.5590 -2.6766 -6.8353 38 1 0.1689 -3.1778 -4.8643 39 1 0.4147 -1.8429 -2.8143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709974074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:47 Heat of formation + Delta-G solvation = -43.912785 kcal Electronic energy + Delta-G solvation = -19854.563782 eV Core-core repulsion = 16953.723431 eV Total energy + Delta-G solvation = -2900.840351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.66458 -38.47017 -38.32631 -35.38691 -33.95789 -31.55253 -31.12286 -30.05647 -29.27807 -25.68322 -24.92522 -24.43479 -23.05924 -21.16359 -20.89691 -18.65985 -18.47519 -17.62398 -17.02146 -16.69490 -16.39236 -16.09336 -15.56209 -15.03826 -14.74533 -14.63232 -14.21275 -14.12080 -13.71846 -13.51468 -13.41733 -13.22457 -12.80941 -12.67701 -12.62000 -12.44526 -12.39388 -12.16576 -12.02128 -11.71682 -11.39105 -11.21364 -10.99616 -10.57964 -9.67414 -9.20043 -9.03975 -8.19960 -6.29630 0.46802 0.57357 1.37465 1.38704 1.48408 2.38654 2.39368 2.87392 3.11766 3.37418 3.73322 3.76478 3.89339 4.12654 4.18786 4.29996 4.31601 4.45031 4.51255 4.58902 4.65322 4.66049 4.72591 4.77421 4.92252 5.03995 5.04585 5.19962 5.22040 5.34206 5.44559 5.49266 5.54301 5.66661 5.75251 5.84482 5.96513 6.20209 6.39796 6.51840 6.58015 6.85719 7.39015 8.91683 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.005759 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.763564 B = 4860.418166 C = 5287.768376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.098 3.902 3 H 0.030 0.970 4 C 0.029 3.971 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.956 3.044 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.670 5.670 14 C 0.133 3.867 15 H 0.088 0.912 16 C -0.186 4.186 17 C 0.069 3.931 18 O -0.331 6.331 19 C 0.113 3.887 20 C -0.167 4.167 21 C -0.085 4.085 22 C -0.164 4.164 23 C -0.067 4.067 24 C -0.163 4.163 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.048 0.952 28 H -0.004 1.004 29 H -0.004 1.004 30 H 0.262 0.738 31 H 0.343 0.657 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.156 0.844 38 H 0.142 0.858 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 4.557 -17.552 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.011 4.011 3 H 0.048 0.952 4 C -0.009 4.009 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.301 5.301 14 C 0.023 3.977 15 H 0.106 0.894 16 C -0.225 4.225 17 C -0.007 4.007 18 O -0.246 6.246 19 C 0.067 3.933 20 C -0.186 4.186 21 C -0.103 4.103 22 C -0.182 4.182 23 C -0.085 4.085 24 C -0.164 4.164 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.014 0.986 29 H 0.014 0.986 30 H 0.071 0.929 31 H 0.163 0.837 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.174 0.826 38 H 0.159 0.841 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.112 4.235 -17.648 18.609 hybrid contribution 1.646 0.421 1.285 2.130 sum -2.466 4.656 -16.363 17.190 Atomic orbital electron populations 1.21739 0.94514 1.01421 1.00983 1.21430 0.94938 0.95028 0.89746 0.95212 1.19116 0.94804 0.94684 0.92269 1.21511 0.93247 1.33873 1.08122 0.92327 1.25843 1.02983 0.94950 0.95497 1.70086 1.37422 1.36793 1.12732 0.85590 0.80257 0.77582 0.78475 1.19981 1.21125 1.18986 1.60621 1.33412 1.32495 1.03599 1.20314 0.96476 0.92283 0.88661 0.89393 1.22920 0.98900 1.01318 0.99347 1.23072 1.04699 0.88571 0.84316 1.85924 1.50250 1.35613 1.52789 1.19032 0.89956 0.90211 0.94069 1.20821 1.02680 0.98603 0.96473 1.21250 0.93927 0.95774 0.99310 1.21362 1.02026 1.01491 0.93363 1.21067 0.96273 0.93210 0.97998 1.19933 1.00801 1.01332 0.94354 0.92720 0.92064 0.93293 0.98603 0.98581 0.92912 0.83729 0.89647 0.92243 0.90473 0.85548 0.84185 0.82644 0.84055 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.41 71.99 0.68 -3.68 16 2 C 0.10 3.90 2.41 44.92 0.11 4.01 16 3 H 0.03 1.18 7.30 -2.39 -0.02 1.17 16 4 C 0.03 1.47 4.58 29.85 0.14 1.60 16 5 C -0.53 -28.77 8.12 25.60 0.21 -28.56 16 6 H 0.06 3.04 7.47 -2.91 -0.02 3.02 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 9 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 N -0.67 -24.97 5.27 -473.08 -2.49 -27.46 16 14 C 0.13 4.13 2.39 44.22 0.11 4.24 16 15 H 0.09 2.60 7.02 -2.39 -0.02 2.58 16 16 C -0.19 -5.40 5.46 30.76 0.17 -5.23 16 17 C 0.07 1.61 7.03 72.12 0.51 2.12 16 18 O -0.33 -9.34 10.27 -91.74 -0.94 -10.29 16 19 C 0.11 3.27 6.47 22.52 0.15 3.41 16 20 C -0.17 -4.11 9.94 22.43 0.22 -3.89 16 21 C -0.08 -1.81 10.04 22.22 0.22 -1.58 16 22 C -0.16 -3.89 10.04 22.25 0.22 -3.67 16 23 C -0.07 -1.93 9.27 22.30 0.21 -1.73 16 24 C -0.16 -4.94 5.56 -19.75 -0.11 -5.05 16 25 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.06 1.78 7.30 -2.39 -0.02 1.76 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 31 H 0.34 14.58 6.79 -89.70 -0.61 13.97 16 32 H 0.08 2.45 7.67 -2.39 -0.02 2.43 16 33 H 0.06 1.98 7.90 -2.39 -0.02 1.97 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 38 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.12 3.76 7.70 -2.91 -0.02 3.74 16 Total: -1.00 -62.89 316.36 2.58 -60.31 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.42 Total: 24.47 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 3.28 Total: -37.24 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -2.21 Total: -83.14 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.94 Total: -10.29 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -62.89 2.58 -60.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709974074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.393 kcal (2) G-P(sol) polarization free energy of solvation -62.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds