Wall clock time and date at job start Mon Mar 30 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46912 * 2 1 4 4 C 1.53007 * 109.46456 * 119.99423 * 2 1 3 5 5 C 1.50699 * 109.46556 * 184.99947 * 4 2 1 6 6 H 1.08002 * 120.00553 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99757 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00064 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99889 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47086 * 179.97438 * 9 7 5 11 11 H 1.48507 * 109.47243 * 300.00163 * 9 7 5 12 12 H 1.48502 * 109.47265 * 60.00059 * 9 7 5 13 13 N 1.46893 * 109.47378 * 239.99713 * 2 1 3 14 14 C 1.46897 * 111.00013 * 100.31121 * 13 2 1 15 15 H 1.08998 * 109.43510 * 33.03468 * 14 13 2 16 16 C 1.53072 * 109.43382 * 273.17066 * 14 13 2 17 17 C 1.53415 * 108.29982 * 191.78245 * 16 14 13 18 18 O 1.42828 * 108.36614 * 64.74739 * 17 16 14 19 19 C 1.35849 * 117.84220 * 310.78748 * 18 17 16 20 20 C 1.39146 * 118.49136 * 197.07933 * 19 18 17 21 21 C 1.37967 * 120.21598 * 180.22785 * 20 19 18 22 22 C 1.38288 * 119.95353 * 0.02562 * 21 20 19 23 23 C 1.38104 * 119.98829 * 359.91008 * 22 21 20 24 24 C 1.38374 * 121.81053 * 17.16996 * 19 18 17 25 25 H 1.08998 * 109.47045 * 176.61910 * 1 2 3 26 26 H 1.08997 * 109.47516 * 296.62174 * 1 2 3 27 27 H 1.09000 * 109.46656 * 56.62662 * 1 2 3 28 28 H 1.09005 * 109.46698 * 65.00684 * 4 2 1 29 29 H 1.08988 * 109.47442 * 304.99970 * 4 2 1 30 30 H 0.97002 * 120.00230 * 180.02562 * 8 7 5 31 31 H 1.00900 * 111.00249 * 336.35622 * 13 2 1 32 32 H 1.09004 * 109.69642 * 311.48651 * 16 14 13 33 33 H 1.09000 * 109.70131 * 72.08010 * 16 14 13 34 34 H 1.08994 * 109.68537 * 305.02638 * 17 16 14 35 35 H 1.09002 * 109.71598 * 184.48036 * 17 16 14 36 36 H 1.08001 * 119.89266 * 0.24935 * 20 19 18 37 37 H 1.08000 * 120.02177 * 180.02562 * 21 20 19 38 38 H 1.08004 * 120.00243 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.84281 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5418 -0.6149 1.3129 6 1 4.0789 -0.0855 0.5398 7 6 4.2303 -1.1934 2.3581 8 7 3.5763 -1.8384 3.2993 9 14 6.0919 -1.0610 2.4372 10 1 6.5869 -1.7611 3.6498 11 1 6.6845 -1.6862 1.2275 12 1 6.4843 0.3699 2.4976 13 7 2.0197 -0.6925 -1.1993 14 6 2.4267 0.2687 -2.2329 15 1 2.8308 1.1626 -1.7580 16 6 1.2108 0.6493 -3.0814 17 6 1.7059 1.4087 -4.3192 18 8 2.4918 0.5162 -5.1102 19 6 3.4633 -0.1982 -4.4846 20 6 4.4591 -0.7848 -5.2594 21 6 5.4604 -1.5220 -4.6614 22 6 5.4753 -1.6795 -3.2876 23 6 4.4893 -1.0976 -2.5153 24 6 3.4828 -0.3547 -3.1098 25 1 -0.3633 -1.0259 -0.0606 26 1 -0.3634 0.4605 0.9187 27 1 -0.3633 0.5653 -0.8582 28 1 1.7515 -1.7715 1.2057 29 1 1.6053 -0.2616 2.1370 30 1 4.0606 -2.2451 4.0348 31 1 1.3268 -1.3340 -1.5548 32 1 0.6818 -0.2522 -3.3906 33 1 0.5434 1.2870 -2.5018 34 1 2.3147 2.2581 -4.0096 35 1 0.8533 1.7604 -4.9002 36 1 4.4484 -0.6625 -6.3324 37 1 6.2319 -1.9756 -5.2658 38 1 6.2585 -2.2568 -2.8187 39 1 4.5035 -1.2218 -1.4426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709974077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:50 Heat of formation + Delta-G solvation = -38.893848 kcal Electronic energy + Delta-G solvation = -19994.831906 eV Core-core repulsion = 17094.209192 eV Total energy + Delta-G solvation = -2900.622713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.65908 -38.47915 -38.31780 -35.32113 -33.93005 -31.56303 -31.11960 -30.12095 -29.05508 -25.56731 -24.87339 -24.46635 -23.07025 -21.65623 -20.72555 -18.62541 -18.38660 -17.59177 -17.03597 -16.53328 -16.24167 -16.01141 -15.62850 -14.91074 -14.78798 -14.36401 -14.26545 -14.15939 -13.96962 -13.63006 -13.30860 -13.17431 -12.98179 -12.69082 -12.50911 -12.41101 -12.25848 -12.14556 -11.87652 -11.74050 -11.54506 -11.06972 -10.92889 -10.47144 -9.67091 -9.08017 -8.99575 -8.08729 -6.12767 0.46365 0.56484 1.40053 1.42168 1.49302 2.40142 2.46572 2.87258 3.23144 3.37550 3.73007 3.79419 3.89403 4.14510 4.21963 4.26971 4.30168 4.43086 4.48414 4.55085 4.63098 4.67836 4.72595 4.73041 4.95570 5.00018 5.03527 5.22928 5.27252 5.31518 5.43937 5.53609 5.64679 5.69310 5.80432 5.91567 5.95129 6.35426 6.46907 6.54640 6.72551 7.01209 7.52305 9.03361 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.007258 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.040938 B = 3856.762024 C = 5150.916175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 H 0.056 0.944 4 C 0.038 3.962 5 C -0.493 4.493 6 H 0.055 0.945 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.947 3.053 10 H -0.288 1.288 11 H -0.269 1.269 12 H -0.271 1.271 13 N -0.668 5.668 14 C 0.135 3.865 15 H 0.073 0.927 16 C -0.179 4.179 17 C 0.063 3.937 18 O -0.327 6.327 19 C 0.120 3.880 20 C -0.165 4.165 21 C -0.082 4.082 22 C -0.173 4.173 23 C -0.071 4.071 24 C -0.162 4.162 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.072 0.928 28 H -0.012 1.012 29 H -0.010 1.010 30 H 0.257 0.743 31 H 0.338 0.662 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.685 5.401 -17.711 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.008 4.008 3 H 0.074 0.926 4 C 0.001 3.999 5 C -0.531 4.531 6 H 0.073 0.927 7 C -0.200 4.200 8 N -0.583 5.583 9 Si 0.774 3.226 10 H -0.214 1.214 11 H -0.195 1.195 12 H -0.197 1.197 13 N -0.298 5.298 14 C 0.025 3.975 15 H 0.091 0.909 16 C -0.218 4.218 17 C -0.012 4.012 18 O -0.241 6.241 19 C 0.075 3.925 20 C -0.183 4.183 21 C -0.100 4.100 22 C -0.192 4.192 23 C -0.090 4.090 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.007 0.993 29 H 0.008 0.992 30 H 0.066 0.934 31 H 0.157 0.843 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.153 0.847 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.144 0.856 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.081 5.231 -17.478 18.362 hybrid contribution 0.069 0.043 0.857 0.860 sum -2.012 5.273 -16.621 17.553 Atomic orbital electron populations 1.22426 0.95941 1.01867 1.02232 1.21529 0.92627 0.96144 0.90472 0.92555 1.19020 0.95025 0.94207 0.91688 1.21410 0.93382 1.32055 1.06298 0.92666 1.25801 1.02446 0.95824 0.95919 1.70081 1.37001 1.38094 1.13098 0.85766 0.81218 0.78302 0.77359 1.21400 1.19457 1.19674 1.60282 1.46212 1.18379 1.04901 1.20360 0.92767 0.93763 0.90587 0.90935 1.23014 0.98494 1.02357 0.97935 1.23150 0.95277 0.90448 0.92369 1.85932 1.45382 1.54628 1.38196 1.18908 0.89407 0.94043 0.90181 1.20808 0.94266 1.02520 1.00738 1.21199 0.97866 0.96765 0.94160 1.21304 1.00122 1.02889 0.94849 1.21154 0.92886 0.94436 1.00498 1.19963 0.99546 1.04288 0.92535 0.92860 0.92606 0.90949 0.99316 0.99184 0.93379 0.84282 0.90523 0.88308 0.91466 0.84658 0.83570 0.82661 0.85571 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.05 9.06 71.98 0.65 -4.40 16 2 C 0.10 3.92 2.59 44.92 0.12 4.04 16 3 H 0.06 2.20 7.17 -2.39 -0.02 2.18 16 4 C 0.04 1.98 4.65 29.85 0.14 2.12 16 5 C -0.49 -27.83 8.84 25.60 0.23 -27.60 16 6 H 0.06 3.06 7.46 -2.91 -0.02 3.04 16 7 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 8 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 9 Si 0.95 45.67 29.54 68.60 2.03 47.70 16 10 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 13 N -0.67 -24.05 5.02 -473.09 -2.38 -26.43 16 14 C 0.14 4.18 2.58 44.21 0.11 4.30 16 15 H 0.07 2.42 7.30 -2.39 -0.02 2.40 16 16 C -0.18 -4.02 5.23 30.76 0.16 -3.86 16 17 C 0.06 1.24 7.03 72.12 0.51 1.75 16 18 O -0.33 -8.44 10.27 -91.85 -0.94 -9.38 16 19 C 0.12 3.50 6.47 22.52 0.15 3.64 16 20 C -0.16 -4.24 9.94 22.42 0.22 -4.01 16 21 C -0.08 -2.05 10.04 22.22 0.22 -1.82 16 22 C -0.17 -5.32 10.04 22.25 0.22 -5.09 16 23 C -0.07 -2.58 9.27 22.30 0.21 -2.38 16 24 C -0.16 -5.31 5.56 -19.75 -0.11 -5.42 16 25 H 0.05 1.62 8.07 -2.39 -0.02 1.60 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.72 6.50 -2.39 -0.02 1.71 16 28 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 29 H -0.01 -0.57 8.14 -2.39 -0.02 -0.58 16 30 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.34 11.31 7.77 -89.69 -0.70 10.61 16 32 H 0.08 1.75 7.90 -2.39 -0.02 1.73 16 33 H 0.10 1.89 6.80 -2.39 -0.02 1.88 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 39 H 0.11 4.87 7.41 -2.91 -0.02 4.85 16 Total: -1.00 -66.89 315.76 2.62 -64.27 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.34 Total: 20.37 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 3.29 Total: -38.52 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -2.09 Total: -84.43 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.94 Total: -9.38 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -66.89 2.62 -64.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709974077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.376 kcal (2) G-P(sol) polarization free energy of solvation -66.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds