Wall clock time and date at job start Mon Mar 30 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47421 * 2 1 4 4 C 1.52999 * 109.47041 * 239.99909 * 2 1 3 5 5 C 1.50702 * 109.47014 * 175.00033 * 4 2 1 6 6 H 1.08002 * 120.00261 * 0.02562 * 5 4 2 7 7 C 1.37886 * 120.00011 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99781 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99815 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47214 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46663 * 120.00276 * 9 7 5 12 12 H 1.48495 * 109.46993 * 239.99865 * 9 7 5 13 13 O 1.42898 * 109.47345 * 120.00113 * 2 1 3 14 14 C 1.36016 * 116.99916 * 275.29229 * 13 2 1 15 15 C 1.38233 * 119.83152 * 5.39942 * 14 13 2 16 16 C 1.38289 * 119.88556 * 179.83203 * 15 14 13 17 17 C 1.38038 * 119.92386 * 0.42729 * 16 15 14 18 18 C 1.38721 * 120.58265 * 359.67265 * 17 16 15 19 19 C 1.38201 * 119.89694 * 0.24999 * 18 17 16 20 20 N 1.39695 * 122.96746 * 179.43740 * 19 18 17 21 21 C 1.46431 * 113.10919 * 20.09114 * 20 19 18 22 22 C 1.53376 * 108.65283 * 306.73743 * 21 20 19 23 23 C 1.50817 * 118.09260 * 180.42186 * 18 17 16 24 24 H 1.08997 * 109.47353 * 300.00044 * 1 2 3 25 25 H 1.09000 * 109.47421 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47095 * 60.00142 * 1 2 3 27 27 H 1.08999 * 109.47448 * 294.99741 * 4 2 1 28 28 H 1.08994 * 109.47364 * 55.00543 * 4 2 1 29 29 H 0.97006 * 119.99802 * 179.97438 * 8 7 5 30 30 H 1.07994 * 120.05329 * 0.10994 * 15 14 13 31 31 H 1.07996 * 120.03678 * 180.16669 * 16 15 14 32 32 H 1.08006 * 119.70344 * 179.66093 * 17 16 15 33 33 H 1.00909 * 111.00328 * 254.56496 * 20 19 18 34 34 H 1.09003 * 109.60408 * 66.48549 * 21 20 19 35 35 H 1.09001 * 109.61270 * 186.98546 * 21 20 19 36 36 H 1.08999 * 109.76854 * 187.84449 * 22 21 20 37 37 H 1.09007 * 109.76431 * 308.57280 * 22 21 20 38 38 H 1.08999 * 109.43552 * 75.49073 * 23 18 17 39 39 H 1.08997 * 109.43433 * 315.61885 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5418 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1936 -2.3578 8 7 3.5764 -1.8379 -3.2994 9 14 6.0922 -1.0624 -2.4360 10 1 6.5838 -0.2929 -1.2650 11 1 6.6854 -2.4236 -2.4179 12 1 6.4872 -0.3669 -3.6872 13 8 2.0063 -0.6736 1.1667 14 6 2.1068 0.0617 2.3066 15 6 1.6499 1.3662 2.3258 16 6 1.7483 2.1137 3.4851 17 6 2.3104 1.5583 4.6169 18 6 2.7734 0.2507 4.6061 19 6 2.6777 -0.5044 3.4526 20 7 3.1334 -1.8221 3.3667 21 6 3.2772 -2.4669 4.6735 22 6 4.1537 -1.5785 5.5651 23 6 3.3684 -0.3025 5.8767 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.7516 -1.7715 -1.2056 28 1 1.6054 -0.2618 -2.1369 29 1 4.0608 -2.2447 -4.0349 30 1 1.2128 1.7993 1.4383 31 1 1.3897 3.1322 3.5036 32 1 2.3904 2.1472 5.5188 33 1 3.9935 -1.8739 2.8415 34 1 2.2954 -2.5889 5.1311 35 1 3.7498 -3.4414 4.5507 36 1 4.3878 -2.1028 6.4916 37 1 5.0757 -1.3261 5.0412 38 1 2.5693 -0.5315 6.5817 39 1 4.0377 0.4372 6.3158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709994548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:27 Heat of formation + Delta-G solvation = -26.761539 kcal Electronic energy + Delta-G solvation = -19822.828597 eV Core-core repulsion = 16922.731980 eV Total energy + Delta-G solvation = -2900.096617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.29341 -38.19399 -35.91851 -33.60400 -32.52078 -31.32018 -30.09930 -28.39476 -27.38686 -24.53619 -23.41711 -23.02747 -21.78034 -20.56267 -19.11807 -17.44942 -16.51575 -16.31577 -15.94874 -14.92128 -14.67535 -14.52459 -14.37033 -13.91408 -13.54331 -13.28691 -12.93856 -12.80096 -12.44027 -12.00768 -11.90233 -11.59597 -11.48314 -11.40502 -11.28400 -10.97404 -10.81996 -10.72675 -10.49678 -10.31210 -9.89765 -9.33106 -9.22570 -9.04472 -8.36562 -8.03302 -7.22982 -5.99165 -3.99797 1.59556 1.82977 3.32099 3.39567 3.44190 3.97938 4.02903 4.27080 4.47562 4.79607 4.85862 4.90571 5.26209 5.33952 5.36526 5.40054 5.52791 5.56112 5.66715 5.71443 5.78066 5.81923 5.86033 5.92368 6.07363 6.09407 6.15108 6.28999 6.51042 6.61896 6.69512 6.77219 6.87340 7.08192 7.41501 7.49273 7.58504 7.70549 7.97787 8.29529 8.42399 9.03838 9.62928 11.12451 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018743 B = 0.006253 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.557076 B = 4477.080173 C = 5203.146824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.084 3.916 3 H 0.060 0.940 4 C 0.026 3.974 5 C -0.509 4.509 6 H 0.055 0.945 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 O -0.275 6.275 14 C 0.146 3.854 15 C -0.210 4.210 16 C -0.096 4.096 17 C -0.158 4.158 18 C -0.096 4.096 19 C 0.076 3.924 20 N -0.624 5.624 21 C 0.061 3.939 22 C -0.160 4.160 23 C -0.073 4.073 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.260 0.740 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.360 0.640 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 4.005 16.615 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.029 3.971 3 H 0.078 0.922 4 C -0.011 4.011 5 C -0.547 4.547 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 O -0.186 6.186 14 C 0.097 3.903 15 C -0.230 4.230 16 C -0.115 4.115 17 C -0.177 4.177 18 C -0.100 4.100 19 C -0.022 4.022 20 N -0.253 5.253 21 C -0.068 4.068 22 C -0.200 4.200 23 C -0.110 4.110 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.187 0.813 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.792 3.373 16.266 16.845 hybrid contribution 1.623 0.712 0.066 1.773 sum -1.169 4.084 16.332 16.875 Atomic orbital electron populations 1.22400 0.97176 1.02564 1.01257 1.22854 0.91792 0.97000 0.85492 0.92242 1.19251 0.96503 0.96553 0.88756 1.21143 0.91721 1.34138 1.07730 0.92680 1.24972 0.98319 0.95344 0.95741 1.69960 1.35376 1.36142 1.12146 0.86547 0.85956 0.77762 0.77824 1.19822 1.21002 1.21091 1.86372 1.79466 1.37271 1.15520 1.19113 0.93403 0.90230 0.87557 1.21208 1.07424 0.94433 0.99918 1.20742 0.99138 0.99101 0.92538 1.20676 1.03743 0.94778 0.98519 1.19602 1.01236 0.93829 0.95295 1.17709 1.03147 0.89255 0.92102 1.56819 1.36338 1.14434 1.17706 1.22070 0.99854 0.96927 0.87976 1.22296 0.99198 0.97225 1.01252 1.20457 0.99045 0.96997 0.94517 0.93343 0.91942 0.91596 0.95228 0.94549 0.93054 0.85132 0.86474 0.86809 0.81297 0.90644 0.90120 0.90965 0.91563 0.90799 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 9.16 37.15 0.34 -2.79 16 2 C 0.08 1.79 2.17 -26.73 -0.06 1.74 16 3 H 0.06 1.24 6.32 -51.93 -0.33 0.91 16 4 C 0.03 0.68 4.68 -27.88 -0.13 0.55 16 5 C -0.51 -14.44 8.88 -34.44 -0.31 -14.75 16 6 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 O -0.27 -6.02 9.18 -19.79 -0.18 -6.20 16 14 C 0.15 2.80 6.62 -38.93 -0.26 2.54 16 15 C -0.21 -3.55 8.21 -39.56 -0.32 -3.87 16 16 C -0.10 -1.39 10.05 -39.64 -0.40 -1.78 16 17 C -0.16 -2.18 9.63 -39.48 -0.38 -2.56 16 18 C -0.10 -1.41 5.74 -104.40 -0.60 -2.01 16 19 C 0.08 1.31 6.14 -83.63 -0.51 0.80 16 20 N -0.62 -10.23 6.15 -58.37 -0.36 -10.59 16 21 C 0.06 0.75 6.61 -3.88 -0.03 0.73 16 22 C -0.16 -1.70 6.19 -26.52 -0.16 -1.87 16 23 C -0.07 -0.82 5.81 -27.81 -0.16 -0.98 16 24 H 0.05 0.77 6.88 -51.93 -0.36 0.41 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.13 2.11 5.38 -52.49 -0.28 1.83 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.36 5.99 8.84 -39.29 -0.35 5.64 16 34 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 315.77 15.07 4.76 4.76 Total: -1.00 -31.05 315.77 -9.07 -40.12 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.93 Total: 3.90 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -3.08 Total: -22.71 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.38 Total: -36.74 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.18 Total: -6.20 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.05 -9.07 -40.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709994548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.356 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds