Wall clock time and date at job start Mon Mar 30 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47421 * 2 1 4 4 C 1.52999 * 109.47041 * 239.99909 * 2 1 3 5 5 C 1.50702 * 109.47014 * 175.00033 * 4 2 1 6 6 H 1.08002 * 120.00261 * 0.02562 * 5 4 2 7 7 C 1.37886 * 120.00011 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99781 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99815 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47214 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46663 * 120.00276 * 9 7 5 12 12 H 1.48495 * 109.46993 * 239.99865 * 9 7 5 13 13 O 1.42898 * 109.47345 * 120.00113 * 2 1 3 14 14 C 1.36016 * 116.99916 * 275.29229 * 13 2 1 15 15 C 1.38233 * 119.83152 * 5.39942 * 14 13 2 16 16 C 1.38289 * 119.88556 * 179.83203 * 15 14 13 17 17 C 1.38038 * 119.92386 * 0.42729 * 16 15 14 18 18 C 1.38721 * 120.58265 * 359.67265 * 17 16 15 19 19 C 1.38201 * 119.89694 * 0.24999 * 18 17 16 20 20 N 1.39695 * 122.96746 * 179.43740 * 19 18 17 21 21 C 1.46431 * 113.10919 * 20.09114 * 20 19 18 22 22 C 1.53376 * 108.65283 * 306.73743 * 21 20 19 23 23 C 1.50817 * 118.09260 * 180.42186 * 18 17 16 24 24 H 1.08997 * 109.47353 * 300.00044 * 1 2 3 25 25 H 1.09000 * 109.47421 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47095 * 60.00142 * 1 2 3 27 27 H 1.08999 * 109.47448 * 294.99741 * 4 2 1 28 28 H 1.08994 * 109.47364 * 55.00543 * 4 2 1 29 29 H 0.97006 * 119.99802 * 179.97438 * 8 7 5 30 30 H 1.07994 * 120.05329 * 0.10994 * 15 14 13 31 31 H 1.07996 * 120.03678 * 180.16669 * 16 15 14 32 32 H 1.08006 * 119.70344 * 179.66093 * 17 16 15 33 33 H 1.00909 * 111.00328 * 254.56496 * 20 19 18 34 34 H 1.09003 * 109.60408 * 66.48549 * 21 20 19 35 35 H 1.09001 * 109.61270 * 186.98546 * 21 20 19 36 36 H 1.08999 * 109.76854 * 187.84449 * 22 21 20 37 37 H 1.09007 * 109.76431 * 308.57280 * 22 21 20 38 38 H 1.08999 * 109.43552 * 75.49073 * 23 18 17 39 39 H 1.08997 * 109.43433 * 315.61885 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5418 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1936 -2.3578 8 7 3.5764 -1.8379 -3.2994 9 14 6.0922 -1.0624 -2.4360 10 1 6.5838 -0.2929 -1.2650 11 1 6.6854 -2.4236 -2.4179 12 1 6.4872 -0.3669 -3.6872 13 8 2.0063 -0.6736 1.1667 14 6 2.1068 0.0617 2.3066 15 6 1.6499 1.3662 2.3258 16 6 1.7483 2.1137 3.4851 17 6 2.3104 1.5583 4.6169 18 6 2.7734 0.2507 4.6061 19 6 2.6777 -0.5044 3.4526 20 7 3.1334 -1.8221 3.3667 21 6 3.2772 -2.4669 4.6735 22 6 4.1537 -1.5785 5.5651 23 6 3.3684 -0.3025 5.8767 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.7516 -1.7715 -1.2056 28 1 1.6054 -0.2618 -2.1369 29 1 4.0608 -2.2447 -4.0349 30 1 1.2128 1.7993 1.4383 31 1 1.3897 3.1322 3.5036 32 1 2.3904 2.1472 5.5188 33 1 3.9935 -1.8739 2.8415 34 1 2.2954 -2.5889 5.1311 35 1 3.7498 -3.4414 4.5507 36 1 4.3878 -2.1028 6.4916 37 1 5.0757 -1.3261 5.0412 38 1 2.5693 -0.5315 6.5817 39 1 4.0377 0.4372 6.3158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709994548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:27 Heat of formation + Delta-G solvation = -45.276649 kcal Electronic energy + Delta-G solvation = -19823.631473 eV Core-core repulsion = 16922.731980 eV Total energy + Delta-G solvation = -2900.899492 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.51922 -39.56784 -37.08316 -35.48883 -33.95040 -32.91985 -31.22448 -29.62480 -29.29471 -25.58112 -25.30741 -24.21640 -23.14563 -21.91434 -20.38444 -18.83937 -18.47591 -17.77824 -17.13337 -16.58707 -16.07196 -15.90751 -15.58325 -15.15352 -14.77093 -14.55519 -14.40647 -13.88822 -13.77554 -13.64994 -13.53752 -13.31768 -12.89394 -12.70432 -12.69873 -12.57828 -12.37246 -12.04757 -11.95271 -11.66941 -11.47424 -11.21476 -11.01533 -10.59035 -10.33531 -9.21843 -8.50263 -8.20747 -6.29372 0.41990 0.61020 1.36717 1.37482 1.50424 2.39620 2.53579 2.83248 3.13807 3.15814 3.84138 3.93030 4.00838 4.04028 4.18136 4.23640 4.32461 4.36352 4.46087 4.53495 4.56343 4.75376 4.81328 4.84629 4.90809 4.99731 5.03187 5.11563 5.17633 5.23765 5.34117 5.42648 5.49307 5.55942 5.65690 5.76661 5.96181 6.19167 6.28543 6.33964 6.80895 6.90309 7.37642 8.91423 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018743 B = 0.006253 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.557076 B = 4477.080173 C = 5203.146824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.093 3.907 3 H 0.061 0.939 4 C 0.031 3.969 5 C -0.525 4.525 6 H 0.049 0.951 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.274 1.274 13 O -0.305 6.305 14 C 0.103 3.897 15 C -0.221 4.221 16 C -0.097 4.097 17 C -0.150 4.150 18 C -0.099 4.099 19 C 0.057 3.943 20 N -0.647 5.647 21 C 0.058 3.942 22 C -0.153 4.153 23 C -0.072 4.072 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.079 0.921 27 H -0.004 1.004 28 H 0.023 0.977 29 H 0.264 0.736 30 H 0.130 0.870 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.351 0.649 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 5.394 19.313 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.079 0.921 4 C -0.006 4.006 5 C -0.563 4.563 6 H 0.067 0.933 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.200 1.200 13 O -0.218 6.218 14 C 0.056 3.944 15 C -0.240 4.240 16 C -0.116 4.116 17 C -0.169 4.169 18 C -0.102 4.102 19 C -0.041 4.041 20 N -0.275 5.275 21 C -0.070 4.070 22 C -0.192 4.192 23 C -0.109 4.109 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.014 0.986 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.176 0.824 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.975 4.770 18.991 19.680 hybrid contribution 1.348 0.292 -0.676 1.536 sum -0.627 5.061 18.315 19.012 Atomic orbital electron populations 1.22286 0.94548 1.02504 1.02920 1.22529 0.93748 0.95902 0.84092 0.92113 1.19084 0.95626 0.94940 0.90975 1.21424 0.93103 1.34129 1.07613 0.93300 1.25859 1.03456 0.94854 0.95288 1.70077 1.37428 1.36911 1.12790 0.85461 0.79764 0.78008 0.78196 1.19244 1.20367 1.19971 1.86274 1.80747 1.38408 1.16413 1.19547 0.96136 0.91505 0.87256 1.21352 1.07595 0.93925 1.01112 1.21128 0.98499 1.00243 0.91715 1.21158 1.01700 0.94571 0.99476 1.20076 1.00401 0.94087 0.95660 1.18024 1.03546 0.89947 0.92588 1.56808 1.36035 1.14757 1.19927 1.22193 1.00480 0.97627 0.86740 1.22241 0.98165 0.96932 1.01869 1.20579 0.99838 0.97504 0.92990 0.91295 0.92846 0.90167 0.98556 0.95930 0.92722 0.85205 0.83383 0.83232 0.82364 0.90722 0.89029 0.88050 0.92446 0.89051 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.95 9.16 71.98 0.66 -5.29 16 2 C 0.09 4.12 2.17 30.59 0.07 4.19 16 3 H 0.06 2.62 6.32 -2.39 -0.02 2.60 16 4 C 0.03 1.67 4.68 29.85 0.14 1.81 16 5 C -0.52 -30.87 8.88 25.60 0.23 -30.64 16 6 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 7 C 0.00 0.18 5.46 84.66 0.46 0.64 16 8 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 9 Si 0.96 45.63 29.54 68.60 2.03 47.65 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 13 O -0.31 -14.01 9.18 -93.74 -0.86 -14.87 16 14 C 0.10 4.03 6.62 22.69 0.15 4.18 16 15 C -0.22 -7.32 8.21 22.28 0.18 -7.14 16 16 C -0.10 -2.55 10.05 22.23 0.22 -2.32 16 17 C -0.15 -3.62 9.63 22.34 0.22 -3.40 16 18 C -0.10 -2.67 5.74 -19.72 -0.11 -2.78 16 19 C 0.06 1.97 6.14 38.31 0.24 2.20 16 20 N -0.65 -21.61 6.15 -338.58 -2.08 -23.69 16 21 C 0.06 1.37 6.61 86.52 0.57 1.94 16 22 C -0.15 -2.84 6.19 30.73 0.19 -2.65 16 23 C -0.07 -1.36 5.81 29.90 0.17 -1.18 16 24 H 0.07 2.18 6.88 -2.39 -0.02 2.16 16 25 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 27 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 30 H 0.13 4.17 5.38 -2.91 -0.02 4.16 16 31 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 32 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.35 12.23 8.84 -89.69 -0.79 11.44 16 34 H 0.07 1.76 8.11 -2.39 -0.02 1.74 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -69.61 315.77 3.00 -66.61 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.25 Total: 21.85 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 3.38 Total: -40.44 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.80 Total: -80.80 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.86 Total: -14.87 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -69.61 3.00 -66.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709994548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.329 kcal (2) G-P(sol) polarization free energy of solvation -69.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds