Wall clock time and date at job start Mon Mar 30 2020 06:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46914 * 2 1 4 4 O 1.42898 * 109.47350 * 119.99920 * 2 1 3 5 5 C 1.35962 * 117.00219 * 273.49521 * 4 2 1 6 6 C 1.39414 * 119.81862 * 3.75245 * 5 4 2 7 7 C 1.38093 * 120.56951 * 179.97438 * 6 5 4 8 8 C 1.38716 * 120.20321 * 359.76320 * 7 6 5 9 9 N 1.38850 * 120.18364 * 180.26003 * 8 7 6 10 10 C 1.41545 * 119.63530 * 0.50704 * 8 7 6 11 11 C 1.41021 * 120.27720 * 179.74556 * 10 8 7 12 12 H 1.07999 * 119.99957 * 329.40631 * 11 10 8 13 13 C 1.39904 * 120.00282 * 149.68733 * 11 10 8 14 14 N 1.30889 * 120.00361 * 162.46463 * 13 11 10 15 15 Si 1.86809 * 119.99692 * 342.46792 * 13 11 10 16 16 H 1.48496 * 109.46961 * 95.12883 * 15 13 11 17 17 H 1.48490 * 109.46843 * 215.12968 * 15 13 11 18 18 H 1.48503 * 109.46934 * 335.13095 * 15 13 11 19 19 C 1.37839 * 119.82155 * 183.76565 * 5 4 2 20 20 C 1.53004 * 109.47341 * 240.00092 * 2 1 3 21 21 C 1.53781 * 113.61387 * 279.13924 * 20 2 1 22 22 C 1.53954 * 87.01893 * 220.04531 * 21 20 2 23 23 C 1.53783 * 113.61691 * 181.52745 * 20 2 1 24 24 H 1.08999 * 109.46864 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46580 * 299.99878 * 1 2 3 26 26 H 1.08998 * 109.47106 * 59.99979 * 1 2 3 27 27 H 1.08003 * 119.71560 * 0.02562 * 6 5 4 28 28 H 1.08005 * 119.89787 * 180.02562 * 7 6 5 29 29 H 0.97007 * 120.00095 * 180.26379 * 9 8 7 30 30 H 0.97003 * 119.99975 * 0.24604 * 9 8 7 31 31 H 0.97002 * 120.00314 * 179.97438 * 14 13 11 32 32 H 1.07995 * 120.10713 * 0.02562 * 19 5 4 33 33 H 1.08999 * 112.84672 * 50.33055 * 20 2 1 34 34 H 1.08998 * 113.61215 * 334.56049 * 21 20 2 35 35 H 1.08996 * 113.61517 * 105.46453 * 21 20 2 36 36 H 1.09005 * 113.53870 * 270.81003 * 22 21 20 37 37 H 1.09001 * 113.74494 * 139.94086 * 22 21 20 38 38 H 1.08997 * 113.60922 * 254.52920 * 23 20 2 39 39 H 1.08997 * 113.61320 * 25.43387 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1425 0.0703 2.2967 6 6 1.7475 1.4073 2.2982 7 6 1.8783 2.1769 3.4373 8 6 2.4016 1.6239 4.5969 9 7 2.5279 2.3966 5.7435 10 6 2.8108 0.2689 4.6033 11 6 3.3495 -0.3056 5.7731 12 1 3.9025 0.3066 6.4700 13 6 3.1727 -1.6698 6.0279 14 7 3.9354 -2.2767 6.9015 15 14 1.8481 -2.6253 5.1211 16 1 2.4422 -3.2891 3.9330 17 1 1.2718 -3.6524 6.0255 18 1 0.7774 -1.6937 4.6839 19 6 2.6707 -0.5015 3.4342 20 6 2.0401 -0.7212 -1.2493 21 6 2.0344 -2.2537 -1.1213 22 6 3.3856 -2.2400 -1.8591 23 6 3.5734 -0.8094 -1.3269 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.3348 1.8446 1.4011 28 1 1.5684 3.2115 3.4266 29 1 2.8977 2.0083 6.5519 30 1 2.2467 3.3250 5.7362 31 1 3.8125 -3.2225 7.0784 32 1 2.9760 -1.5374 3.4283 33 1 1.5766 -0.3580 -2.1665 34 1 2.1026 -2.6061 -0.0921 35 1 1.2342 -2.7358 -1.6827 36 1 3.2900 -2.2933 -2.9436 37 1 4.1095 -2.9519 -1.4625 38 1 4.0136 -0.1272 -2.0541 39 1 4.0630 -0.7663 -0.3540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719771358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:20 Heat of formation + Delta-G solvation = -7.808262 kcal Electronic energy + Delta-G solvation = -19907.222592 eV Core-core repulsion = 17007.947851 eV Total energy + Delta-G solvation = -2899.274741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.70743 -38.14385 -36.56723 -33.47420 -32.68036 -31.25005 -30.27794 -26.98476 -25.73187 -25.30683 -24.78312 -22.03884 -21.39380 -20.05766 -18.95923 -17.49157 -16.77202 -16.00314 -15.70344 -15.34512 -14.94900 -14.74537 -14.25640 -13.50314 -13.08494 -13.02127 -12.72254 -12.43697 -12.20494 -12.15269 -11.89180 -11.77298 -11.65033 -11.40200 -11.02199 -10.76668 -10.67964 -10.51329 -10.36500 -9.96591 -9.91242 -9.79561 -9.46603 -9.03354 -8.68491 -7.61815 -6.85934 -6.19386 -4.28224 2.64929 2.91400 3.25069 3.32249 3.43950 4.04512 4.10338 4.59413 4.69935 4.87223 4.87928 5.01255 5.17517 5.39633 5.46157 5.51072 5.59991 5.76820 5.79567 5.91288 6.00981 6.02133 6.06290 6.16036 6.21047 6.22550 6.40598 6.44826 6.66930 6.70608 6.73767 7.17671 7.23863 7.35585 7.48275 7.69580 7.92627 8.24649 8.46288 8.58751 8.81775 8.96419 9.03277 10.16618 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019223 B = 0.007122 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.232125 B = 3930.554365 C = 4751.930752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.093 3.907 3 H 0.071 0.929 4 O -0.317 6.317 5 C 0.117 3.883 6 C -0.275 4.275 7 C -0.149 4.149 8 C 0.110 3.890 9 N -0.883 5.883 10 C 0.076 3.924 11 C -0.448 4.448 12 H 0.089 0.911 13 C 0.086 3.914 14 N -0.816 5.816 15 Si 0.912 3.088 16 H -0.270 1.270 17 H -0.296 1.296 18 H -0.246 1.246 19 C -0.242 4.242 20 C -0.110 4.110 21 C -0.130 4.130 22 C -0.143 4.143 23 C -0.134 4.134 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.395 0.605 30 H 0.378 0.622 31 H 0.283 0.717 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.172 2.571 -12.131 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.036 3.964 3 H 0.089 0.911 4 O -0.232 6.232 5 C 0.072 3.928 6 C -0.295 4.295 7 C -0.174 4.174 8 C 0.008 3.992 9 N -0.425 5.425 10 C 0.071 3.929 11 C -0.477 4.477 12 H 0.107 0.893 13 C -0.132 4.132 14 N -0.441 5.441 15 Si 0.739 3.261 16 H -0.196 1.196 17 H -0.224 1.224 18 H -0.169 1.169 19 C -0.263 4.263 20 C -0.128 4.128 21 C -0.167 4.167 22 C -0.181 4.181 23 C -0.171 4.171 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.223 0.777 30 H 0.204 0.796 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.022 2.100 -12.030 12.857 hybrid contribution -0.593 -0.054 -0.076 0.600 sum -4.615 2.046 -12.107 13.117 Atomic orbital electron populations 1.22274 0.96104 1.02575 1.02127 1.21963 0.93309 0.96375 0.84745 0.91115 1.86004 1.82092 1.37869 1.17238 1.18526 0.98604 0.90079 0.85595 1.20190 1.16419 0.94019 0.98867 1.19795 1.07126 0.97879 0.92551 1.17811 1.01880 0.92257 0.87207 1.41899 1.75544 1.12454 1.12573 1.17131 0.92967 0.90067 0.92736 1.19081 1.29885 0.93703 1.05036 0.89325 1.26067 0.95643 0.97598 0.93883 1.69715 1.33048 1.11961 1.29417 0.86282 0.82526 0.78968 0.78329 1.19568 1.22382 1.16881 1.20016 1.14540 1.00415 0.91306 1.22690 0.96861 0.96777 0.96498 1.22869 0.96761 0.95291 1.01799 1.22820 0.98232 0.97652 0.99385 1.22910 0.95683 0.96585 1.01962 0.92084 0.91679 0.92188 0.88198 0.88901 0.77655 0.79630 0.90668 0.87524 0.88555 0.88737 0.92221 0.90835 0.91600 0.92060 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.21 37.16 0.34 -2.12 16 2 C 0.09 1.47 2.23 -26.73 -0.06 1.41 16 3 H 0.07 1.13 6.10 -51.92 -0.32 0.81 16 4 O -0.32 -6.43 7.89 -19.62 -0.15 -6.59 16 5 C 0.12 2.66 6.60 -39.29 -0.26 2.40 16 6 C -0.27 -5.81 8.34 -39.20 -0.33 -6.14 16 7 C -0.15 -3.18 9.87 -39.46 -0.39 -3.57 16 8 C 0.11 2.52 6.79 -83.25 -0.57 1.96 16 9 N -0.88 -17.16 8.98 32.74 0.29 -16.87 16 10 C 0.08 1.95 5.12 -106.65 -0.55 1.40 16 11 C -0.45 -11.99 8.91 -37.90 -0.34 -12.33 16 12 H 0.09 2.42 7.03 -52.49 -0.37 2.05 16 13 C 0.09 2.29 5.41 -17.33 -0.09 2.19 16 14 N -0.82 -22.04 13.93 55.55 0.77 -21.27 16 15 Si 0.91 21.90 24.50 -169.99 -4.17 17.74 16 16 H -0.27 -6.45 6.70 56.52 0.38 -6.07 16 17 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.25 -6.11 6.84 56.52 0.39 -5.73 16 19 C -0.24 -6.10 7.06 -38.80 -0.27 -6.38 16 20 C -0.11 -1.46 3.58 -89.80 -0.32 -1.78 16 21 C -0.13 -1.75 7.49 -25.83 -0.19 -1.94 16 22 C -0.14 -1.74 8.09 -25.83 -0.21 -1.95 16 23 C -0.13 -1.79 7.54 -25.92 -0.20 -1.99 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 1.02 7.20 -51.93 -0.37 0.64 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.10 1.86 5.50 -52.48 -0.29 1.57 16 28 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.39 7.73 7.14 -40.82 -0.29 7.44 16 30 H 0.38 6.07 8.83 -40.82 -0.36 5.71 16 31 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 32 H 0.11 2.77 4.70 -52.49 -0.25 2.53 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.52 7.03 -51.93 -0.36 1.16 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.43 7.72 -51.93 -0.40 1.03 16 LS Contribution 306.79 15.07 4.62 4.62 Total: -1.00 -28.25 306.79 -7.62 -35.88 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -5.57 Total: 15.29 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -3.43 Total: -28.81 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 1.07 Total: -38.14 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.15 Total: -6.59 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.17 Total: 17.74 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.25 -7.62 -35.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719771358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.070 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds