Wall clock time and date at job start Mon Mar 30 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46914 * 2 1 4 4 O 1.42898 * 109.47350 * 119.99920 * 2 1 3 5 5 C 1.35962 * 117.00219 * 273.49521 * 4 2 1 6 6 C 1.39414 * 119.81862 * 3.75245 * 5 4 2 7 7 C 1.38093 * 120.56951 * 179.97438 * 6 5 4 8 8 C 1.38716 * 120.20321 * 359.76320 * 7 6 5 9 9 N 1.38850 * 120.18364 * 180.26003 * 8 7 6 10 10 C 1.41545 * 119.63530 * 0.50704 * 8 7 6 11 11 C 1.41021 * 120.27720 * 179.74556 * 10 8 7 12 12 H 1.07999 * 119.99957 * 329.40631 * 11 10 8 13 13 C 1.39904 * 120.00282 * 149.68733 * 11 10 8 14 14 N 1.30889 * 120.00361 * 162.46463 * 13 11 10 15 15 Si 1.86809 * 119.99692 * 342.46792 * 13 11 10 16 16 H 1.48496 * 109.46961 * 95.12883 * 15 13 11 17 17 H 1.48490 * 109.46843 * 215.12968 * 15 13 11 18 18 H 1.48503 * 109.46934 * 335.13095 * 15 13 11 19 19 C 1.37839 * 119.82155 * 183.76565 * 5 4 2 20 20 C 1.53004 * 109.47341 * 240.00092 * 2 1 3 21 21 C 1.53781 * 113.61387 * 279.13924 * 20 2 1 22 22 C 1.53954 * 87.01893 * 220.04531 * 21 20 2 23 23 C 1.53783 * 113.61691 * 181.52745 * 20 2 1 24 24 H 1.08999 * 109.46864 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46580 * 299.99878 * 1 2 3 26 26 H 1.08998 * 109.47106 * 59.99979 * 1 2 3 27 27 H 1.08003 * 119.71560 * 0.02562 * 6 5 4 28 28 H 1.08005 * 119.89787 * 180.02562 * 7 6 5 29 29 H 0.97007 * 120.00095 * 180.26379 * 9 8 7 30 30 H 0.97003 * 119.99975 * 0.24604 * 9 8 7 31 31 H 0.97002 * 120.00314 * 179.97438 * 14 13 11 32 32 H 1.07995 * 120.10713 * 0.02562 * 19 5 4 33 33 H 1.08999 * 112.84672 * 50.33055 * 20 2 1 34 34 H 1.08998 * 113.61215 * 334.56049 * 21 20 2 35 35 H 1.08996 * 113.61517 * 105.46453 * 21 20 2 36 36 H 1.09005 * 113.53870 * 270.81003 * 22 21 20 37 37 H 1.09001 * 113.74494 * 139.94086 * 22 21 20 38 38 H 1.08997 * 113.60922 * 254.52920 * 23 20 2 39 39 H 1.08997 * 113.61320 * 25.43387 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1425 0.0703 2.2967 6 6 1.7475 1.4073 2.2982 7 6 1.8783 2.1769 3.4373 8 6 2.4016 1.6239 4.5969 9 7 2.5279 2.3966 5.7435 10 6 2.8108 0.2689 4.6033 11 6 3.3495 -0.3056 5.7731 12 1 3.9025 0.3066 6.4700 13 6 3.1727 -1.6698 6.0279 14 7 3.9354 -2.2767 6.9015 15 14 1.8481 -2.6253 5.1211 16 1 2.4422 -3.2891 3.9330 17 1 1.2718 -3.6524 6.0255 18 1 0.7774 -1.6937 4.6839 19 6 2.6707 -0.5015 3.4342 20 6 2.0401 -0.7212 -1.2493 21 6 2.0344 -2.2537 -1.1213 22 6 3.3856 -2.2400 -1.8591 23 6 3.5734 -0.8094 -1.3269 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.3348 1.8446 1.4011 28 1 1.5684 3.2115 3.4266 29 1 2.8977 2.0083 6.5519 30 1 2.2467 3.3250 5.7362 31 1 3.8125 -3.2225 7.0784 32 1 2.9760 -1.5374 3.4283 33 1 1.5766 -0.3580 -2.1665 34 1 2.1026 -2.6061 -0.0921 35 1 1.2342 -2.7358 -1.6827 36 1 3.2900 -2.2933 -2.9436 37 1 4.1095 -2.9519 -1.4625 38 1 4.0136 -0.1272 -2.0541 39 1 4.0630 -0.7663 -0.3540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719771358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:19 Heat of formation + Delta-G solvation = -24.703441 kcal Electronic energy + Delta-G solvation = -19907.955222 eV Core-core repulsion = 17007.947851 eV Total energy + Delta-G solvation = -2900.007371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11089 -39.62892 -38.06475 -35.40497 -34.31337 -32.60501 -32.08473 -28.70249 -26.90753 -26.75285 -26.15694 -23.67819 -22.93630 -21.54854 -20.27792 -19.16846 -18.50009 -17.65020 -17.33498 -16.67596 -16.46880 -16.13386 -15.72200 -15.13446 -14.85006 -14.73374 -14.16338 -13.84100 -13.67200 -13.51937 -13.33273 -13.10735 -13.04522 -12.84390 -12.66642 -12.51213 -12.36817 -11.93656 -11.79576 -11.44306 -11.38793 -11.05006 -11.01429 -10.77472 -10.29081 -9.50065 -8.85234 -7.94405 -6.25387 0.78683 1.07357 1.28475 1.41082 1.47546 2.14765 2.60758 2.67814 3.56426 3.57618 3.63556 3.80264 3.84901 3.99307 4.24331 4.30708 4.36607 4.45423 4.55491 4.70068 4.84095 4.84436 4.86615 4.95297 4.96889 5.02685 5.08387 5.11114 5.30029 5.32701 5.36228 5.40943 5.61856 5.66323 5.72493 5.89013 6.13037 6.25069 6.58864 6.84720 6.95861 7.19102 7.49591 8.22903 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019223 B = 0.007122 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.232125 B = 3930.554365 C = 4751.930752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 H 0.074 0.926 4 O -0.332 6.332 5 C 0.105 3.895 6 C -0.254 4.254 7 C -0.149 4.149 8 C 0.103 3.897 9 N -0.872 5.872 10 C 0.048 3.952 11 C -0.470 4.470 12 H 0.070 0.930 13 C 0.054 3.946 14 N -0.854 5.854 15 Si 0.959 3.041 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.261 1.261 19 C -0.257 4.257 20 C -0.102 4.102 21 C -0.137 4.137 22 C -0.135 4.135 23 C -0.141 4.141 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.133 0.867 28 H 0.130 0.870 29 H 0.393 0.607 30 H 0.397 0.603 31 H 0.289 0.711 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.834 4.180 -15.212 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.025 3.975 3 H 0.091 0.909 4 O -0.247 6.247 5 C 0.060 3.940 6 C -0.274 4.274 7 C -0.173 4.173 8 C 0.000 4.000 9 N -0.415 5.415 10 C 0.042 3.958 11 C -0.501 4.501 12 H 0.088 0.912 13 C -0.160 4.160 14 N -0.482 5.482 15 Si 0.786 3.214 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.185 1.185 19 C -0.278 4.278 20 C -0.119 4.119 21 C -0.174 4.174 22 C -0.172 4.172 23 C -0.178 4.178 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.114 0.886 27 H 0.151 0.849 28 H 0.148 0.852 29 H 0.222 0.778 30 H 0.226 0.774 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.151 0.849 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.693 3.732 -15.107 16.570 hybrid contribution -0.119 -0.385 0.665 0.777 sum -5.812 3.347 -14.442 15.924 Atomic orbital electron populations 1.22254 0.94561 1.02707 1.03102 1.22385 0.94574 0.96593 0.83996 0.90851 1.86014 1.82282 1.38662 1.17751 1.18583 0.98544 0.90945 0.85967 1.20636 1.13731 0.93089 0.99977 1.20238 1.05782 0.99622 0.91645 1.18007 1.01515 0.91643 0.88867 1.41821 1.74930 1.13170 1.11563 1.17283 0.94316 0.91729 0.92424 1.19083 1.31294 0.93973 1.05727 0.91160 1.26525 0.96762 0.98201 0.94469 1.69735 1.34567 1.12600 1.31282 0.85557 0.80440 0.77986 0.77412 1.20310 1.20808 1.18467 1.20080 1.15291 0.99805 0.92656 1.22808 0.96582 0.96081 0.96475 1.22827 0.98417 0.95920 1.00248 1.22836 0.97003 0.96474 1.00866 1.22879 0.95966 0.98151 1.00812 0.92455 0.93270 0.88569 0.84932 0.85185 0.77846 0.77413 0.90061 0.89439 0.84910 0.92378 0.90218 0.87872 0.92496 0.89953 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 9.21 71.98 0.66 -3.57 16 2 C 0.08 2.33 2.23 30.60 0.07 2.40 16 3 H 0.07 2.08 6.10 -2.38 -0.01 2.07 16 4 O -0.33 -13.31 7.89 -93.12 -0.73 -14.04 16 5 C 0.11 4.74 6.60 22.46 0.15 4.89 16 6 C -0.25 -10.07 8.34 22.52 0.19 -9.89 16 7 C -0.15 -5.90 9.87 22.35 0.22 -5.68 16 8 C 0.10 4.61 6.79 38.96 0.26 4.88 16 9 N -0.87 -32.96 8.98 -50.34 -0.45 -33.42 16 10 C 0.05 2.48 5.12 -21.18 -0.11 2.37 16 11 C -0.47 -26.25 8.91 23.36 0.21 -26.05 16 12 H 0.07 4.04 7.03 -2.91 -0.02 4.02 16 13 C 0.05 2.99 5.41 85.24 0.46 3.45 16 14 N -0.85 -48.09 13.93 21.82 0.30 -47.79 16 15 Si 0.96 47.03 24.50 68.60 1.68 48.71 16 16 H -0.28 -13.63 6.70 99.48 0.67 -12.97 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.26 -13.21 6.84 99.48 0.68 -12.53 16 19 C -0.26 -13.28 7.06 22.78 0.16 -13.12 16 20 C -0.10 -2.36 3.58 -10.27 -0.04 -2.40 16 21 C -0.14 -3.43 7.49 31.18 0.23 -3.19 16 22 C -0.13 -2.96 8.09 31.18 0.25 -2.70 16 23 C -0.14 -3.48 7.54 31.12 0.23 -3.25 16 24 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.05 1.38 7.20 -2.39 -0.02 1.37 16 26 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.13 4.36 5.50 -2.91 -0.02 4.34 16 28 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 29 H 0.39 15.46 7.14 -92.70 -0.66 14.80 16 30 H 0.40 11.82 8.83 -92.71 -0.82 11.00 16 31 H 0.29 14.88 8.30 -92.71 -0.77 14.11 16 32 H 0.09 4.77 4.70 -2.91 -0.01 4.75 16 33 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 1.89 7.03 -2.39 -0.02 1.87 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.05 1.74 7.72 -2.39 -0.02 1.73 16 Total: -1.00 -63.46 306.79 3.28 -60.17 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: -0.47 Total: 38.20 kcal Atomic # 6 Polarization: -54.80 SS G_CDS: 2.96 Total: -51.84 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -0.15 Total: -81.20 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.73 Total: -14.04 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.68 Total: 48.71 kcal Total: -63.46 3.28 -60.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719771358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.471 kcal (2) G-P(sol) polarization free energy of solvation -63.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds