Wall clock time and date at job start Mon Mar 30 2020 06:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99837 * 2 1 4 4 H 1.08997 * 112.85372 * 341.19699 * 3 2 1 5 5 C 1.53785 * 113.69246 * 112.46333 * 3 2 1 6 6 C 1.53783 * 87.08476 * 139.98953 * 5 3 2 7 7 H 1.08998 * 113.68446 * 89.12822 * 6 5 3 8 8 C 1.52992 * 113.61644 * 220.02242 * 6 5 3 9 9 N 1.46508 * 109.47186 * 272.49648 * 8 6 5 10 10 C 1.38855 * 120.00043 * 179.97438 * 9 8 6 11 11 C 1.39566 * 119.83976 * 180.02562 * 10 9 8 12 12 C 1.36340 * 120.16063 * 180.02562 * 11 10 9 13 13 C 1.40886 * 119.83539 * 359.97438 * 12 11 10 14 14 C 1.41132 * 120.15279 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00031 * 334.78131 * 14 13 12 16 16 C 1.39867 * 120.00141 * 154.78716 * 14 13 12 17 17 N 1.30903 * 119.99451 * 334.28838 * 16 14 13 18 18 Si 1.86794 * 120.00231 * 154.02075 * 16 14 13 19 19 H 1.48498 * 109.47150 * 180.27554 * 18 16 14 20 20 H 1.48505 * 109.47231 * 300.26988 * 18 16 14 21 21 H 1.48500 * 109.47298 * 60.27209 * 18 16 14 22 22 C 1.40886 * 119.68958 * 0.27548 * 13 12 11 23 23 C 1.36343 * 119.83403 * 359.46838 * 22 13 12 24 24 C 1.53784 * 113.61548 * 209.99885 * 3 2 1 25 25 H 1.08990 * 109.47112 * 300.00234 * 1 2 3 26 26 H 1.09006 * 109.46719 * 60.00246 * 1 2 3 27 27 H 1.08997 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.09005 * 113.60889 * 25.43810 * 5 3 2 29 29 H 1.09000 * 113.61389 * 254.54233 * 5 3 2 30 30 H 1.09002 * 109.47413 * 152.49871 * 8 6 5 31 31 H 1.09004 * 109.47576 * 32.49286 * 8 6 5 32 32 H 0.97004 * 119.99590 * 0.02562 * 9 8 6 33 33 H 1.08005 * 119.91976 * 0.02562 * 11 10 9 34 34 H 1.08003 * 120.07796 * 179.97438 * 12 11 10 35 35 H 0.97003 * 120.00619 * 353.98365 * 17 16 14 36 36 H 1.07994 * 120.08154 * 179.72706 * 22 13 12 37 37 H 1.08003 * 119.91640 * 180.27764 * 23 22 13 38 38 H 1.08996 * 113.61799 * 105.38750 * 24 3 2 39 39 H 1.09006 * 113.68788 * 334.49499 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0789 -0.3237 5 6 2.7531 1.6511 1.3014 6 6 3.8221 2.3199 0.4211 7 1 3.6222 3.3708 0.2118 8 6 5.2537 2.0713 0.8999 9 7 5.6247 3.0936 1.8817 10 6 6.8862 3.0738 2.4616 11 6 7.2360 4.0489 3.3969 12 6 8.4730 4.0360 3.9700 13 6 9.3989 3.0347 3.6164 14 6 10.6811 3.0147 4.2059 15 1 11.1136 3.9271 4.5891 16 6 11.3917 1.8132 4.2937 17 7 10.7491 0.6731 4.3182 18 14 13.2580 1.8353 4.3683 19 1 13.7666 0.4425 4.4506 20 1 13.7947 2.4867 3.1465 21 1 13.6966 2.5940 5.5671 22 6 9.0407 2.0567 2.6676 23 6 7.7983 2.0789 2.1065 24 6 3.3756 1.3719 -0.7045 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1168 0.7771 1.8418 29 1 2.2132 2.3504 1.9398 30 1 5.9347 2.1196 0.0502 31 1 5.3168 1.0854 1.3606 32 1 4.9888 3.7838 2.1271 33 1 6.5249 4.8156 3.6673 34 1 8.7424 4.7915 4.6933 35 1 9.7801 0.6632 4.3637 36 1 9.7471 1.2889 2.3886 37 1 7.5208 1.3272 1.3824 38 1 3.3383 1.8458 -1.6853 39 1 3.9106 0.4222 -0.7133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721916326.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:13 Heat of formation + Delta-G solvation = -13.051599 kcal Electronic energy + Delta-G solvation = -18629.304692 eV Core-core repulsion = 15729.802582 eV Total energy + Delta-G solvation = -2899.502109 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.76006 -38.03789 -36.60567 -34.79644 -32.81651 -29.58097 -29.10697 -27.32944 -26.34938 -25.79312 -23.96214 -22.53485 -20.95476 -20.09202 -19.64989 -17.76472 -17.00593 -16.16215 -15.59323 -15.36242 -15.26796 -14.58944 -14.24272 -13.86627 -13.62529 -13.13787 -12.88841 -12.55479 -12.28943 -12.20893 -12.09293 -11.83234 -11.53141 -11.30087 -11.14237 -10.97772 -10.83931 -10.61639 -10.39357 -10.30135 -9.66093 -9.56710 -9.38835 -9.03641 -8.53776 -7.67876 -7.00555 -6.50521 -4.06321 2.93360 2.97158 3.25746 3.39960 3.46526 3.57254 4.14810 4.17518 4.43213 4.54710 4.63828 4.74248 4.78724 4.98681 5.10975 5.15639 5.36434 5.39947 5.60002 5.63853 5.67008 5.78406 5.87432 5.98704 6.11522 6.17117 6.22337 6.31907 6.78480 6.85506 7.02179 7.12448 7.42031 7.50461 7.66494 7.92984 7.98834 8.24885 8.39480 8.50774 8.71060 8.98588 9.12284 10.27872 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041197 B = 0.003299 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.500474 B = 8484.244366 C = 8841.901633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.059 3.941 4 H 0.085 0.915 5 C -0.147 4.147 6 C -0.118 4.118 7 H 0.093 0.907 8 C 0.152 3.848 9 N -0.761 5.761 10 C 0.081 3.919 11 C -0.146 4.146 12 C -0.191 4.191 13 C 0.066 3.934 14 C -0.535 4.535 15 H 0.069 0.931 16 C 0.038 3.962 17 N -0.813 5.813 18 Si 1.062 2.938 19 H -0.276 1.276 20 H -0.277 1.277 21 H -0.279 1.279 22 C -0.181 4.181 23 C -0.146 4.146 24 C -0.127 4.127 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.383 0.617 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.296 0.704 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.717 0.666 -8.006 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C 0.001 3.999 4 H 0.103 0.897 5 C -0.185 4.185 6 C -0.137 4.137 7 H 0.112 0.888 8 C 0.026 3.974 9 N -0.397 5.397 10 C -0.016 4.016 11 C -0.168 4.168 12 C -0.211 4.211 13 C 0.063 3.937 14 C -0.565 4.565 15 H 0.087 0.913 16 C -0.181 4.181 17 N -0.438 5.438 18 Si 0.887 3.113 19 H -0.201 1.201 20 H -0.203 1.203 21 H -0.204 1.204 22 C -0.201 4.201 23 C -0.168 4.168 24 C -0.165 4.165 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.216 0.784 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.247 -0.706 -8.070 16.388 hybrid contribution -1.933 1.526 0.077 2.464 sum -16.179 0.820 -7.993 18.065 Atomic orbital electron populations 1.22769 0.81490 1.02638 0.99762 1.87967 1.19397 1.27633 1.94603 1.23771 0.93823 0.84940 0.97372 0.89719 1.23569 0.97132 1.01048 0.96718 1.22507 0.95107 0.99244 0.96867 0.88830 1.20942 0.92538 0.92183 0.91708 1.43810 1.13954 1.33209 1.48707 1.17273 0.86125 0.98370 0.99792 1.19875 0.97350 0.99038 1.00579 1.20524 0.93588 1.03166 1.03804 1.17564 0.92744 0.91902 0.91503 1.20293 1.01196 0.97319 1.37668 0.91285 1.26839 1.07930 0.91669 0.91675 1.70478 1.13623 1.28438 1.31236 0.83686 0.73121 0.76805 0.77691 1.20124 1.20264 1.20430 1.20766 0.96018 1.03083 1.00205 1.20008 0.94865 0.98756 1.03128 1.23209 0.95089 1.00496 0.97727 0.94112 0.94199 0.89801 0.88915 0.91456 0.93435 0.93288 0.78435 0.89467 0.88966 0.89084 0.87663 0.89212 0.90915 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.33 16 2 O -0.38 -4.26 10.72 -35.23 -0.38 -4.64 16 3 C 0.06 0.59 4.31 -25.92 -0.11 0.47 16 4 H 0.08 0.69 7.87 -51.93 -0.41 0.29 16 5 C -0.15 -1.61 7.47 -25.92 -0.19 -1.81 16 6 C -0.12 -1.33 3.75 -89.81 -0.34 -1.66 16 7 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 8 C 0.15 2.25 4.73 -4.04 -0.02 2.23 16 9 N -0.76 -13.22 5.70 -58.50 -0.33 -13.55 16 10 C 0.08 1.79 6.67 -83.69 -0.56 1.23 16 11 C -0.15 -3.32 9.82 -39.77 -0.39 -3.71 16 12 C -0.19 -4.81 9.74 -39.26 -0.38 -5.19 16 13 C 0.07 1.82 5.30 -106.80 -0.57 1.25 16 14 C -0.54 -14.87 8.96 -37.88 -0.34 -15.21 16 15 H 0.07 1.87 7.97 -52.48 -0.42 1.46 16 16 C 0.04 1.02 4.92 -17.34 -0.09 0.94 16 17 N -0.81 -22.61 12.31 55.54 0.68 -21.92 16 18 Si 1.06 22.64 30.00 -169.99 -5.10 17.54 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 C -0.18 -4.78 7.90 -39.26 -0.31 -5.09 16 23 C -0.15 -3.44 9.23 -39.77 -0.37 -3.81 16 24 C -0.13 -1.30 7.47 -25.91 -0.19 -1.50 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 1.17 7.90 -51.93 -0.41 0.76 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.74 7.93 -51.93 -0.41 0.33 16 31 H 0.05 0.79 7.63 -51.93 -0.40 0.39 16 32 H 0.38 5.90 8.47 -40.82 -0.35 5.55 16 33 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.09 2.21 8.06 -52.48 -0.42 1.79 16 35 H 0.30 8.45 6.72 -40.82 -0.27 8.18 16 36 H 0.11 2.88 6.49 -52.49 -0.34 2.54 16 37 H 0.09 1.94 6.68 -52.48 -0.35 1.59 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 321.88 15.07 4.85 4.85 Total: -1.00 -29.57 321.88 -8.99 -38.55 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.95 Total: 9.69 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: -2.76 Total: -30.52 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.35 Total: -35.47 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.38 Total: -4.64 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.10 Total: 17.54 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.57 -8.99 -38.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721916326.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.503 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds