Wall clock time and date at job start Mon Mar 30 2020 06:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99837 * 2 1 4 4 H 1.08997 * 112.85372 * 341.19699 * 3 2 1 5 5 C 1.53785 * 113.69246 * 112.46333 * 3 2 1 6 6 C 1.53783 * 87.08476 * 139.98953 * 5 3 2 7 7 H 1.08998 * 113.68446 * 89.12822 * 6 5 3 8 8 C 1.52992 * 113.61644 * 220.02242 * 6 5 3 9 9 N 1.46508 * 109.47186 * 272.49648 * 8 6 5 10 10 C 1.38855 * 120.00043 * 179.97438 * 9 8 6 11 11 C 1.39566 * 119.83976 * 180.02562 * 10 9 8 12 12 C 1.36340 * 120.16063 * 180.02562 * 11 10 9 13 13 C 1.40886 * 119.83539 * 359.97438 * 12 11 10 14 14 C 1.41132 * 120.15279 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00031 * 334.78131 * 14 13 12 16 16 C 1.39867 * 120.00141 * 154.78716 * 14 13 12 17 17 N 1.30903 * 119.99451 * 334.28838 * 16 14 13 18 18 Si 1.86794 * 120.00231 * 154.02075 * 16 14 13 19 19 H 1.48498 * 109.47150 * 180.27554 * 18 16 14 20 20 H 1.48505 * 109.47231 * 300.26988 * 18 16 14 21 21 H 1.48500 * 109.47298 * 60.27209 * 18 16 14 22 22 C 1.40886 * 119.68958 * 0.27548 * 13 12 11 23 23 C 1.36343 * 119.83403 * 359.46838 * 22 13 12 24 24 C 1.53784 * 113.61548 * 209.99885 * 3 2 1 25 25 H 1.08990 * 109.47112 * 300.00234 * 1 2 3 26 26 H 1.09006 * 109.46719 * 60.00246 * 1 2 3 27 27 H 1.08997 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.09005 * 113.60889 * 25.43810 * 5 3 2 29 29 H 1.09000 * 113.61389 * 254.54233 * 5 3 2 30 30 H 1.09002 * 109.47413 * 152.49871 * 8 6 5 31 31 H 1.09004 * 109.47576 * 32.49286 * 8 6 5 32 32 H 0.97004 * 119.99590 * 0.02562 * 9 8 6 33 33 H 1.08005 * 119.91976 * 0.02562 * 11 10 9 34 34 H 1.08003 * 120.07796 * 179.97438 * 12 11 10 35 35 H 0.97003 * 120.00619 * 353.98365 * 17 16 14 36 36 H 1.07994 * 120.08154 * 179.72706 * 22 13 12 37 37 H 1.08003 * 119.91640 * 180.27764 * 23 22 13 38 38 H 1.08996 * 113.61799 * 105.38750 * 24 3 2 39 39 H 1.09006 * 113.68788 * 334.49499 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0789 -0.3237 5 6 2.7531 1.6511 1.3014 6 6 3.8221 2.3199 0.4211 7 1 3.6222 3.3708 0.2118 8 6 5.2537 2.0713 0.8999 9 7 5.6247 3.0936 1.8817 10 6 6.8862 3.0738 2.4616 11 6 7.2360 4.0489 3.3969 12 6 8.4730 4.0360 3.9700 13 6 9.3989 3.0347 3.6164 14 6 10.6811 3.0147 4.2059 15 1 11.1136 3.9271 4.5891 16 6 11.3917 1.8132 4.2937 17 7 10.7491 0.6731 4.3182 18 14 13.2580 1.8353 4.3683 19 1 13.7666 0.4425 4.4506 20 1 13.7947 2.4867 3.1465 21 1 13.6966 2.5940 5.5671 22 6 9.0407 2.0567 2.6676 23 6 7.7983 2.0789 2.1065 24 6 3.3756 1.3719 -0.7045 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1168 0.7771 1.8418 29 1 2.2132 2.3504 1.9398 30 1 5.9347 2.1196 0.0502 31 1 5.3168 1.0854 1.3606 32 1 4.9888 3.7838 2.1271 33 1 6.5249 4.8156 3.6673 34 1 8.7424 4.7915 4.6933 35 1 9.7801 0.6632 4.3637 36 1 9.7471 1.2889 2.3886 37 1 7.5208 1.3272 1.3824 38 1 3.3383 1.8458 -1.6853 39 1 3.9106 0.4222 -0.7133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721916326.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:12 Heat of formation + Delta-G solvation = -30.176858 kcal Electronic energy + Delta-G solvation = -18630.047299 eV Core-core repulsion = 15729.802582 eV Total energy + Delta-G solvation = -2900.244716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.67469 -39.80172 -37.62794 -36.40485 -34.57123 -31.51621 -30.76847 -28.52533 -27.34455 -26.67583 -25.74350 -23.80989 -22.67065 -21.84127 -20.58050 -19.75234 -18.02795 -17.50330 -16.71958 -16.49707 -16.23398 -16.10557 -15.72316 -15.41271 -14.99480 -14.71217 -14.45259 -14.01176 -13.69826 -13.43760 -13.41457 -13.24552 -12.91432 -12.73149 -12.57634 -12.38147 -11.95386 -11.85311 -11.61325 -11.47479 -11.36941 -11.28940 -10.87778 -10.42359 -10.37671 -9.63794 -9.06718 -8.31196 -6.10668 0.96139 1.07786 1.52171 1.68246 1.81676 2.40410 2.74541 2.78203 2.96054 3.56270 3.65890 3.66422 3.85859 3.87626 4.19123 4.29167 4.35655 4.41412 4.51112 4.56586 4.71667 4.76853 4.81679 4.83966 4.84456 4.87584 5.00497 5.03147 5.18113 5.19376 5.38529 5.49657 5.56691 5.73649 5.89546 5.92887 6.29832 6.33438 6.39508 6.69342 6.96098 7.09814 7.25858 8.19087 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041197 B = 0.003299 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.500474 B = 8484.244366 C = 8841.901633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.405 6.405 3 C 0.064 3.936 4 H 0.110 0.890 5 C -0.150 4.150 6 C -0.108 4.108 7 H 0.114 0.886 8 C 0.148 3.852 9 N -0.748 5.748 10 C 0.106 3.894 11 C -0.151 4.151 12 C -0.198 4.198 13 C 0.028 3.972 14 C -0.572 4.572 15 H 0.063 0.937 16 C -0.001 4.001 17 N -0.837 5.837 18 Si 1.115 2.885 19 H -0.273 1.273 20 H -0.266 1.266 21 H -0.259 1.259 22 C -0.193 4.193 23 C -0.160 4.160 24 C -0.127 4.127 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.399 0.601 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.278 0.722 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.653 1.868 -9.051 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.324 6.324 3 C 0.006 3.994 4 H 0.128 0.872 5 C -0.188 4.188 6 C -0.127 4.127 7 H 0.132 0.868 8 C 0.023 3.977 9 N -0.383 5.383 10 C 0.006 3.994 11 C -0.174 4.174 12 C -0.218 4.218 13 C 0.025 3.975 14 C -0.602 4.602 15 H 0.082 0.918 16 C -0.214 4.214 17 N -0.462 5.462 18 Si 0.933 3.067 19 H -0.198 1.198 20 H -0.191 1.191 21 H -0.184 1.184 22 C -0.213 4.213 23 C -0.183 4.183 24 C -0.165 4.165 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.233 0.767 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.250 0.515 -9.129 18.646 hybrid contribution -1.605 1.193 0.321 2.026 sum -17.856 1.708 -8.808 19.983 Atomic orbital electron populations 1.22960 0.79828 1.03623 1.00843 1.87933 1.21365 1.28467 1.94681 1.23805 0.94051 0.85251 0.96259 0.87219 1.23546 0.97426 1.00459 0.97360 1.22446 0.92333 1.00591 0.97325 0.86835 1.21077 0.95096 0.90764 0.90718 1.43873 1.12355 1.33902 1.48161 1.17423 0.87271 0.96580 0.98087 1.20193 0.97071 0.99944 1.00149 1.20755 0.94370 1.02641 1.03991 1.17876 0.93642 0.93376 0.92631 1.20483 1.02437 0.97629 1.39696 0.91842 1.28288 1.12037 0.90905 0.90176 1.70603 1.12458 1.29056 1.34101 0.83034 0.67648 0.77194 0.78805 1.19807 1.19113 1.18379 1.20691 0.96936 1.02789 1.00917 1.20170 0.94412 0.99974 1.03696 1.23200 0.95231 0.99682 0.98381 0.93417 0.92650 0.89051 0.91155 0.90272 0.93767 0.94700 0.76652 0.85863 0.88390 0.91020 0.89771 0.87673 0.89074 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.85 113.37 1.23 1.54 16 2 O -0.41 -8.38 10.72 -148.98 -1.60 -9.97 16 3 C 0.06 1.10 4.31 31.12 0.13 1.23 16 4 H 0.11 1.34 7.87 -2.39 -0.02 1.32 16 5 C -0.15 -2.94 7.47 31.12 0.23 -2.71 16 6 C -0.11 -2.11 3.75 -10.27 -0.04 -2.15 16 7 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 8 C 0.15 4.12 4.73 86.38 0.41 4.53 16 9 N -0.75 -23.93 5.70 -338.99 -1.93 -25.86 16 10 C 0.11 4.49 6.67 38.67 0.26 4.74 16 11 C -0.15 -6.59 9.82 22.15 0.22 -6.38 16 12 C -0.20 -9.99 9.74 22.48 0.22 -9.77 16 13 C 0.03 1.58 5.30 -21.27 -0.11 1.47 16 14 C -0.57 -33.00 8.96 23.37 0.21 -32.79 16 15 H 0.06 3.58 7.97 -2.91 -0.02 3.55 16 16 C 0.00 -0.05 4.92 85.23 0.42 0.36 16 17 N -0.84 -48.51 12.31 21.82 0.27 -48.24 16 18 Si 1.12 46.38 30.00 68.60 2.06 48.44 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 20 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 21 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 22 C -0.19 -10.57 7.90 22.48 0.18 -10.39 16 23 C -0.16 -7.60 9.23 22.15 0.20 -7.40 16 24 C -0.13 -2.28 7.47 31.12 0.23 -2.05 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.71 7.90 -2.38 -0.02 1.69 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.29 7.93 -2.39 -0.02 1.27 16 31 H 0.03 1.09 7.63 -2.38 -0.02 1.07 16 32 H 0.40 10.70 8.47 -92.71 -0.79 9.91 16 33 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.28 16.78 6.72 -92.71 -0.62 16.16 16 36 H 0.08 4.87 6.49 -2.91 -0.02 4.85 16 37 H 0.11 4.56 6.68 -2.91 -0.02 4.54 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.67 8.10 -2.38 -0.02 1.65 16 Total: -1.00 -66.06 321.88 2.98 -63.08 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.39 Total: 32.32 kcal Atomic # 6 Polarization: -63.55 SS G_CDS: 3.79 Total: -59.76 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -1.66 Total: -74.10 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -1.60 Total: -9.97 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.06 Total: 48.44 kcal Total: -66.06 2.98 -63.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721916326.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.905 kcal (2) G-P(sol) polarization free energy of solvation -66.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds