Wall clock time and date at job start Mon Mar 30 2020 06:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99716 * 2 1 4 4 H 1.09007 * 112.90859 * 18.74422 * 3 2 1 5 5 C 1.53779 * 113.61441 * 247.49699 * 3 2 1 6 6 C 1.53774 * 87.08175 * 220.01693 * 5 3 2 7 7 C 1.53775 * 113.61677 * 149.99970 * 3 2 1 8 8 H 1.09003 * 113.68712 * 25.41619 * 7 3 2 9 9 N 1.46903 * 113.61350 * 254.53127 * 7 3 2 10 10 C 1.46906 * 110.99608 * 157.99465 * 9 7 3 11 11 H 1.08988 * 109.47266 * 326.20883 * 10 9 7 12 12 C 1.50703 * 109.46740 * 86.21271 * 10 9 7 13 13 H 1.08000 * 120.00162 * 60.64984 * 12 10 9 14 14 C 1.37878 * 119.99739 * 240.36495 * 12 10 9 15 15 N 1.31515 * 119.99799 * 175.07029 * 14 12 10 16 16 Si 1.86798 * 119.99939 * 355.07147 * 14 12 10 17 17 H 1.48499 * 109.47386 * 84.81522 * 16 14 12 18 18 H 1.48501 * 109.47308 * 204.81776 * 16 14 12 19 19 H 1.48505 * 109.47272 * 324.81504 * 16 14 12 20 20 C 1.50704 * 109.46824 * 206.20602 * 10 9 7 21 21 C 1.38231 * 120.00071 * 315.17054 * 20 10 9 22 22 C 1.38236 * 119.99936 * 179.76086 * 21 20 10 23 23 C 1.38242 * 119.99758 * 0.50885 * 22 21 20 24 24 C 1.38232 * 120.00025 * 359.74674 * 23 22 21 25 25 C 1.38233 * 119.99761 * 135.43828 * 20 10 9 26 26 H 1.09002 * 109.47391 * 60.00537 * 1 2 3 27 27 H 1.09007 * 109.46823 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47602 * 300.00156 * 1 2 3 29 29 H 1.09007 * 113.61681 * 105.46882 * 5 3 2 30 30 H 1.09005 * 113.69008 * 334.58263 * 5 3 2 31 31 H 1.08996 * 113.61871 * 270.88017 * 6 5 3 32 32 H 1.09011 * 113.68920 * 139.98616 * 6 5 3 33 33 H 1.00897 * 110.99539 * 281.94770 * 9 7 3 34 34 H 0.96998 * 119.99807 * 179.97438 * 15 14 12 35 35 H 1.08005 * 120.00560 * 359.97438 * 21 20 10 36 36 H 1.08004 * 120.00350 * 180.23158 * 22 21 20 37 37 H 1.07997 * 119.99624 * 179.72506 * 23 22 21 38 38 H 1.07998 * 119.99956 * 179.97438 * 24 23 22 39 39 H 1.08005 * 119.99924 * 0.02562 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3141 2.0799 0.3227 5 6 2.7534 1.6490 -1.3017 6 6 3.8225 2.3183 -0.4222 7 6 3.3755 1.3721 0.7045 8 1 3.9097 0.4220 0.7147 9 7 3.3253 2.0125 2.0256 10 6 4.4683 1.6031 2.8528 11 1 4.7335 0.5717 2.6210 12 6 5.6438 2.5010 2.5648 13 1 5.5692 3.5632 2.7457 14 6 6.8167 1.9657 2.0759 15 7 7.8086 2.7584 1.7332 16 14 6.9967 0.1147 1.9005 17 1 6.4203 -0.3178 0.6021 18 1 8.4355 -0.2495 1.9492 19 1 6.2774 -0.5601 3.0107 20 6 4.0984 1.7116 4.3097 21 6 3.4319 2.8309 4.7721 22 6 3.0883 2.9282 6.1075 23 6 3.4204 1.9108 6.9825 24 6 4.0916 0.7939 6.5211 25 6 4.4305 0.6943 5.1846 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.2140 2.3478 -1.9412 30 1 3.1170 0.7749 -1.8422 31 1 3.6221 3.3694 -0.2150 32 1 4.8430 2.1410 -0.7621 33 1 3.2828 3.0169 1.9391 34 1 8.6338 2.3817 1.3896 35 1 3.1766 3.6279 4.0894 36 1 2.5642 3.8010 6.4681 37 1 3.1558 1.9888 8.0267 38 1 4.3514 -0.0007 7.2048 39 1 4.9554 -0.1781 4.8242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724139982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:04 Heat of formation + Delta-G solvation = 1.036052 kcal Electronic energy + Delta-G solvation = -19860.901768 eV Core-core repulsion = 16962.010545 eV Total energy + Delta-G solvation = -2898.891223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.22599 -38.40267 -36.09996 -34.25850 -32.01125 -30.22260 -29.83243 -26.79388 -26.66328 -23.93904 -23.63917 -22.43911 -21.67533 -19.87049 -19.31550 -17.16409 -16.61361 -16.21330 -15.35066 -14.87473 -14.77741 -14.43129 -14.23913 -13.90349 -13.00173 -12.83091 -12.74685 -12.66543 -12.36909 -12.04564 -11.99038 -11.64334 -11.51121 -11.24349 -10.99176 -10.72992 -10.70292 -10.40786 -10.28666 -9.88462 -9.84634 -9.42411 -9.15542 -8.70018 -8.19313 -7.90342 -7.34176 -6.25160 -4.26468 2.13904 2.20504 3.17623 3.26101 3.27796 4.09823 4.25905 4.57843 4.98795 5.02888 5.13626 5.23925 5.35572 5.46734 5.55283 5.55945 5.57773 5.63719 5.74544 5.76912 5.86014 6.04446 6.12098 6.14352 6.27628 6.40373 6.43003 6.55404 6.62896 6.69952 6.77289 6.86473 7.16979 7.25312 7.39402 7.53096 7.59095 7.79075 7.97346 8.25215 8.48904 8.79536 9.37345 10.87150 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.008818 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.484796 B = 3174.553091 C = 4427.645797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.068 3.932 4 H 0.086 0.914 5 C -0.160 4.160 6 C -0.153 4.153 7 C 0.090 3.910 8 H 0.091 0.909 9 N -0.676 5.676 10 C 0.206 3.794 11 H 0.051 0.949 12 C -0.531 4.531 13 H 0.078 0.922 14 C 0.083 3.917 15 N -0.887 5.887 16 Si 0.866 3.134 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.263 1.263 20 C -0.015 4.015 21 C -0.105 4.105 22 C -0.126 4.126 23 C -0.151 4.151 24 C -0.123 4.123 25 C -0.133 4.133 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.337 0.663 34 H 0.266 0.734 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.181 -2.641 -0.173 11.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C 0.009 3.991 4 H 0.104 0.896 5 C -0.198 4.198 6 C -0.192 4.192 7 C -0.022 4.022 8 H 0.109 0.891 9 N -0.305 5.305 10 C 0.098 3.902 11 H 0.069 0.931 12 C -0.570 4.570 13 H 0.096 0.904 14 C -0.122 4.122 15 N -0.523 5.523 16 Si 0.693 3.307 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.188 1.188 20 C -0.017 4.017 21 C -0.123 4.123 22 C -0.144 4.144 23 C -0.169 4.169 24 C -0.141 4.141 25 C -0.151 4.151 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.155 0.845 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.296 -3.272 0.040 11.761 hybrid contribution 0.920 -0.206 -0.495 1.065 sum -10.377 -3.479 -0.455 10.954 Atomic orbital electron populations 1.22696 0.82187 1.01967 0.99520 1.87935 1.18848 1.28318 1.94520 1.24200 0.94754 0.84497 0.95605 0.89611 1.23361 0.98751 1.00752 0.96950 1.23258 0.99134 0.99252 0.97594 1.23053 0.93091 0.97886 0.88166 0.89095 1.60826 1.44986 1.12645 1.12010 1.18701 0.88458 0.96935 0.86100 0.93105 1.21459 0.96603 0.95560 1.43381 0.90427 1.25042 0.95620 0.97478 0.94020 1.69890 1.05102 1.35093 1.42262 0.87058 0.77525 0.86651 0.79438 1.19693 1.21245 1.18764 1.20295 0.91862 0.92259 0.97245 1.20819 0.98845 0.97945 0.94683 1.21014 1.01012 0.98368 0.94034 1.20835 1.02141 0.95236 0.98725 1.20933 0.99792 0.97896 0.95490 1.21006 1.01438 0.99230 0.93452 0.94727 0.90413 0.94074 0.91791 0.89904 0.89909 0.90675 0.84478 0.92397 0.86776 0.87308 0.87456 0.87317 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.85 101.05 1.10 1.51 16 2 O -0.38 -6.30 10.71 -35.23 -0.38 -6.68 16 3 C 0.07 1.10 4.11 -25.92 -0.11 1.00 16 4 H 0.09 1.28 7.87 -51.92 -0.41 0.87 16 5 C -0.16 -2.41 7.91 -25.92 -0.21 -2.61 16 6 C -0.15 -2.69 7.71 -25.92 -0.20 -2.89 16 7 C 0.09 1.71 3.88 -66.90 -0.26 1.45 16 8 H 0.09 1.94 7.49 -51.93 -0.39 1.55 16 9 N -0.68 -13.51 5.91 -101.32 -0.60 -14.11 16 10 C 0.21 4.67 2.15 -70.01 -0.15 4.52 16 11 H 0.05 1.21 3.80 -51.94 -0.20 1.02 16 12 C -0.53 -13.85 8.73 -34.44 -0.30 -14.15 16 13 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 14 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 15 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 16 Si 0.87 20.79 27.02 -169.99 -4.59 16.20 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.26 -6.09 6.22 56.52 0.35 -5.74 16 20 C -0.02 -0.33 4.93 -104.62 -0.52 -0.85 16 21 C -0.10 -2.04 9.28 -39.58 -0.37 -2.41 16 22 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 23 C -0.15 -2.51 10.05 -39.58 -0.40 -2.91 16 24 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 25 C -0.13 -2.71 9.67 -39.58 -0.38 -3.09 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.39 7.83 -51.93 -0.41 0.99 16 32 H 0.07 1.46 8.14 -51.92 -0.42 1.03 16 33 H 0.34 6.53 7.42 -39.29 -0.29 6.24 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.11 2.13 7.46 -52.48 -0.39 1.74 16 36 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.11 2.24 7.54 -52.48 -0.40 1.85 16 LS Contribution 321.67 15.07 4.85 4.85 Total: -1.00 -28.73 321.67 -8.52 -37.26 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.89 Total: 10.88 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -2.68 Total: -23.42 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.18 Total: -39.08 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.38 Total: -6.68 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.59 Total: 16.20 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.73 -8.52 -37.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724139982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.294 kcal (2) G-P(sol) polarization free energy of solvation -28.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds