Wall clock time and date at job start Mon Mar 30 2020 06:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99716 * 2 1 4 4 H 1.09007 * 112.90859 * 18.74422 * 3 2 1 5 5 C 1.53779 * 113.61441 * 247.49699 * 3 2 1 6 6 C 1.53774 * 87.08175 * 220.01693 * 5 3 2 7 7 C 1.53775 * 113.61677 * 149.99970 * 3 2 1 8 8 H 1.09003 * 113.68712 * 25.41619 * 7 3 2 9 9 N 1.46903 * 113.61350 * 254.53127 * 7 3 2 10 10 C 1.46906 * 110.99608 * 157.99465 * 9 7 3 11 11 H 1.08988 * 109.47266 * 326.20883 * 10 9 7 12 12 C 1.50703 * 109.46740 * 86.21271 * 10 9 7 13 13 H 1.08000 * 120.00162 * 60.64984 * 12 10 9 14 14 C 1.37878 * 119.99739 * 240.36495 * 12 10 9 15 15 N 1.31515 * 119.99799 * 175.07029 * 14 12 10 16 16 Si 1.86798 * 119.99939 * 355.07147 * 14 12 10 17 17 H 1.48499 * 109.47386 * 84.81522 * 16 14 12 18 18 H 1.48501 * 109.47308 * 204.81776 * 16 14 12 19 19 H 1.48505 * 109.47272 * 324.81504 * 16 14 12 20 20 C 1.50704 * 109.46824 * 206.20602 * 10 9 7 21 21 C 1.38231 * 120.00071 * 315.17054 * 20 10 9 22 22 C 1.38236 * 119.99936 * 179.76086 * 21 20 10 23 23 C 1.38242 * 119.99758 * 0.50885 * 22 21 20 24 24 C 1.38232 * 120.00025 * 359.74674 * 23 22 21 25 25 C 1.38233 * 119.99761 * 135.43828 * 20 10 9 26 26 H 1.09002 * 109.47391 * 60.00537 * 1 2 3 27 27 H 1.09007 * 109.46823 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47602 * 300.00156 * 1 2 3 29 29 H 1.09007 * 113.61681 * 105.46882 * 5 3 2 30 30 H 1.09005 * 113.69008 * 334.58263 * 5 3 2 31 31 H 1.08996 * 113.61871 * 270.88017 * 6 5 3 32 32 H 1.09011 * 113.68920 * 139.98616 * 6 5 3 33 33 H 1.00897 * 110.99539 * 281.94770 * 9 7 3 34 34 H 0.96998 * 119.99807 * 179.97438 * 15 14 12 35 35 H 1.08005 * 120.00560 * 359.97438 * 21 20 10 36 36 H 1.08004 * 120.00350 * 180.23158 * 22 21 20 37 37 H 1.07997 * 119.99624 * 179.72506 * 23 22 21 38 38 H 1.07998 * 119.99956 * 179.97438 * 24 23 22 39 39 H 1.08005 * 119.99924 * 0.02562 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3141 2.0799 0.3227 5 6 2.7534 1.6490 -1.3017 6 6 3.8225 2.3183 -0.4222 7 6 3.3755 1.3721 0.7045 8 1 3.9097 0.4220 0.7147 9 7 3.3253 2.0125 2.0256 10 6 4.4683 1.6031 2.8528 11 1 4.7335 0.5717 2.6210 12 6 5.6438 2.5010 2.5648 13 1 5.5692 3.5632 2.7457 14 6 6.8167 1.9657 2.0759 15 7 7.8086 2.7584 1.7332 16 14 6.9967 0.1147 1.9005 17 1 6.4203 -0.3178 0.6021 18 1 8.4355 -0.2495 1.9492 19 1 6.2774 -0.5601 3.0107 20 6 4.0984 1.7116 4.3097 21 6 3.4319 2.8309 4.7721 22 6 3.0883 2.9282 6.1075 23 6 3.4204 1.9108 6.9825 24 6 4.0916 0.7939 6.5211 25 6 4.4305 0.6943 5.1846 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.2140 2.3478 -1.9412 30 1 3.1170 0.7749 -1.8422 31 1 3.6221 3.3694 -0.2150 32 1 4.8430 2.1410 -0.7621 33 1 3.2828 3.0169 1.9391 34 1 8.6338 2.3817 1.3896 35 1 3.1766 3.6279 4.0894 36 1 2.5642 3.8010 6.4681 37 1 3.1558 1.9888 8.0267 38 1 4.3514 -0.0007 7.2048 39 1 4.9554 -0.1781 4.8242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724139982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:04 Heat of formation + Delta-G solvation = -16.985147 kcal Electronic energy + Delta-G solvation = -19861.683226 eV Core-core repulsion = 16962.010545 eV Total energy + Delta-G solvation = -2899.672681 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.64276 -39.82627 -37.45411 -35.88350 -33.99474 -31.66829 -31.29369 -28.51863 -27.83613 -25.33473 -25.15440 -24.01187 -23.11398 -21.47577 -20.76135 -19.14744 -17.91795 -17.64536 -16.75183 -16.69299 -16.00703 -15.86434 -15.66452 -15.28410 -14.87011 -14.43806 -14.18164 -14.01009 -13.80790 -13.66465 -13.53453 -13.22908 -12.97168 -12.82298 -12.52251 -12.17882 -12.03680 -11.96880 -11.80194 -11.70954 -11.30388 -11.26310 -10.80348 -10.34308 -9.63337 -9.41300 -8.99636 -8.37984 -6.40142 0.68702 0.75210 1.22839 1.26220 1.32727 2.22834 2.85121 3.01095 3.18589 3.60268 3.71001 3.83678 3.99949 4.11044 4.18507 4.29979 4.40549 4.45439 4.56694 4.57708 4.62407 4.65551 4.72378 4.86378 4.89646 4.91694 4.94347 5.10361 5.19168 5.29463 5.33327 5.39702 5.44181 5.75680 5.80062 5.98686 6.06059 6.32357 6.38150 6.46461 6.64708 6.78225 7.26437 8.77896 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.008818 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.484796 B = 3174.553091 C = 4427.645797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.082 3.918 4 H 0.103 0.897 5 C -0.142 4.142 6 C -0.155 4.155 7 C 0.070 3.930 8 H 0.063 0.937 9 N -0.665 5.665 10 C 0.213 3.787 11 H 0.036 0.964 12 C -0.518 4.518 13 H 0.043 0.957 14 C 0.035 3.965 15 N -0.933 5.933 16 Si 0.915 3.085 17 H -0.267 1.267 18 H -0.286 1.286 19 H -0.252 1.252 20 C -0.049 4.049 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.122 4.122 25 C -0.157 4.157 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.339 0.661 34 H 0.266 0.734 35 H 0.113 0.887 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.625 -3.131 0.944 14.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C 0.024 3.976 4 H 0.121 0.879 5 C -0.180 4.180 6 C -0.194 4.194 7 C -0.041 4.041 8 H 0.081 0.919 9 N -0.293 5.293 10 C 0.105 3.895 11 H 0.054 0.946 12 C -0.558 4.558 13 H 0.061 0.939 14 C -0.165 4.165 15 N -0.573 5.573 16 Si 0.740 3.260 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.177 1.177 20 C -0.050 4.050 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.160 4.160 24 C -0.140 4.140 25 C -0.176 4.176 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.157 0.843 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.157 0.843 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.771 -3.775 1.156 14.326 hybrid contribution 1.573 -0.006 -0.744 1.740 sum -12.199 -3.781 0.412 12.778 Atomic orbital electron populations 1.22933 0.79861 1.03497 1.00656 1.87896 1.21426 1.28362 1.94625 1.24007 0.93518 0.85063 0.95057 0.87937 1.23256 0.97274 1.00837 0.96647 1.23220 0.98600 0.99538 0.98064 1.23231 0.95774 0.96921 0.88178 0.91861 1.60855 1.43229 1.12744 1.12495 1.18510 0.87968 0.95064 0.87960 0.94598 1.21584 0.97716 0.94475 1.41986 0.93895 1.25662 0.95523 1.01058 0.94247 1.70009 1.05873 1.36763 1.44620 0.86255 0.77384 0.82482 0.79842 1.19243 1.21163 1.17682 1.20270 0.94311 0.94024 0.96392 1.20942 0.99259 0.97359 0.96233 1.21408 1.00161 0.99677 0.92910 1.21327 1.00170 0.93982 1.00545 1.21293 0.98937 0.99212 0.94580 1.21132 1.02473 0.98997 0.94984 0.92704 0.88834 0.93744 0.88674 0.90089 0.89283 0.93384 0.84303 0.92501 0.86896 0.84024 0.83462 0.84311 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.85 113.37 1.23 1.82 16 2 O -0.40 -12.83 10.71 -148.98 -1.60 -14.42 16 3 C 0.08 2.54 4.11 31.12 0.13 2.67 16 4 H 0.10 2.82 7.87 -2.38 -0.02 2.80 16 5 C -0.14 -4.05 7.91 31.12 0.25 -3.80 16 6 C -0.15 -5.51 7.71 31.12 0.24 -5.27 16 7 C 0.07 2.72 3.88 45.44 0.18 2.90 16 8 H 0.06 2.79 7.49 -2.39 -0.02 2.77 16 9 N -0.66 -27.04 5.91 -474.47 -2.80 -29.84 16 10 C 0.21 9.96 2.15 43.42 0.09 10.06 16 11 H 0.04 1.77 3.80 -2.39 -0.01 1.76 16 12 C -0.52 -28.21 8.73 25.60 0.22 -27.98 16 13 H 0.04 2.59 8.06 -2.91 -0.02 2.56 16 14 C 0.04 1.98 5.47 84.65 0.46 2.45 16 15 N -0.93 -56.53 13.96 21.45 0.30 -56.23 16 16 Si 0.91 44.34 27.02 68.60 1.85 46.19 16 17 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 19 H -0.25 -11.69 6.22 99.48 0.62 -11.08 16 20 C -0.05 -2.12 4.93 -19.87 -0.10 -2.22 16 21 C -0.12 -4.59 9.28 22.27 0.21 -4.38 16 22 C -0.12 -3.90 10.05 22.27 0.22 -3.67 16 23 C -0.14 -4.17 10.05 22.27 0.22 -3.94 16 24 C -0.12 -3.99 10.05 22.27 0.22 -3.77 16 25 C -0.16 -6.35 9.67 22.27 0.22 -6.13 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.09 3.01 7.83 -2.39 -0.02 2.99 16 32 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.34 13.41 7.42 -89.70 -0.67 12.74 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.11 4.22 7.46 -2.91 -0.02 4.20 16 36 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 37 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 39 H 0.10 4.14 7.54 -2.91 -0.02 4.12 16 Total: -1.00 -64.70 321.67 1.83 -62.87 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.28 Total: 32.72 kcal Atomic # 6 Polarization: -45.08 SS G_CDS: 3.80 Total: -41.29 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -2.50 Total: -86.07 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -1.60 Total: -14.42 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.85 Total: 46.19 kcal Total: -64.70 1.83 -62.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724139982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.889 kcal (2) G-P(sol) polarization free energy of solvation -64.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds