Wall clock time and date at job start Mon Mar 30 2020 06:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00005 * 2 1 4 4 H 1.08999 * 112.84929 * 18.80615 * 3 2 1 5 5 C 1.53779 * 113.61877 * 247.49636 * 3 2 1 6 6 C 1.53780 * 87.08099 * 270.88782 * 5 3 2 7 7 C 1.53778 * 87.08260 * 334.56346 * 6 5 3 8 8 H 1.08998 * 113.69246 * 270.87837 * 7 6 5 9 9 N 1.46901 * 113.61719 * 139.98157 * 7 6 5 10 10 C 1.46902 * 111.00032 * 107.50581 * 9 7 6 11 11 H 1.08992 * 109.46945 * 35.20688 * 10 9 7 12 12 C 1.50706 * 109.46789 * 275.20956 * 10 9 7 13 13 H 1.08001 * 119.99821 * 304.11395 * 12 10 9 14 14 C 1.37880 * 119.99712 * 124.11818 * 12 10 9 15 15 N 1.31514 * 119.99540 * 187.94232 * 14 12 10 16 16 Si 1.86799 * 120.00221 * 7.94058 * 14 12 10 17 17 H 1.48496 * 109.46983 * 268.70931 * 16 14 12 18 18 H 1.48504 * 109.46891 * 28.70816 * 16 14 12 19 19 H 1.48499 * 109.47241 * 148.70853 * 16 14 12 20 20 C 1.50690 * 109.47169 * 155.21185 * 10 9 7 21 21 C 1.38234 * 120.00296 * 45.89740 * 20 10 9 22 22 C 1.38235 * 120.00228 * 179.76766 * 21 20 10 23 23 C 1.38237 * 119.99712 * 0.50849 * 22 21 20 24 24 C 1.38233 * 120.00058 * 359.74729 * 23 22 21 25 25 C 1.38237 * 119.99781 * 226.17356 * 20 10 9 26 26 H 1.09005 * 109.46975 * 59.99388 * 1 2 3 27 27 H 1.08996 * 109.47112 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47043 * 300.00172 * 1 2 3 29 29 H 1.09001 * 113.61149 * 25.43472 * 5 3 2 30 30 H 1.08998 * 113.61883 * 156.33539 * 5 3 2 31 31 H 1.09009 * 113.61169 * 220.01652 * 6 5 3 32 32 H 1.08993 * 113.62016 * 89.11248 * 6 5 3 33 33 H 1.00903 * 110.99778 * 343.55052 * 9 7 6 34 34 H 0.97005 * 119.99864 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.00114 * 359.97438 * 21 20 10 36 36 H 1.07998 * 120.00611 * 180.23110 * 22 21 20 37 37 H 1.08002 * 120.00246 * 179.72483 * 23 22 21 38 38 H 1.08010 * 119.99992 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.00396 * 0.02562 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3138 2.0789 0.3238 5 6 2.7535 1.6490 -1.3017 6 6 4.0061 1.0331 -0.6565 7 6 3.3756 1.3719 0.7046 8 1 3.6305 2.3667 1.0698 9 7 3.5662 0.3258 1.7182 10 6 4.5431 0.7464 2.7315 11 1 4.4454 1.8175 2.9079 12 6 5.9360 0.4429 2.2427 13 1 6.1986 -0.5633 1.9510 14 6 6.8751 1.4497 2.1680 15 7 8.0382 1.2230 1.5976 16 14 6.4952 3.1357 2.8769 17 1 5.8962 3.9925 1.8224 18 1 5.5378 2.9947 4.0033 19 1 7.7497 3.7600 3.3686 20 6 4.2877 0.0004 4.0156 21 6 4.0668 -1.3640 3.9902 22 6 3.8373 -2.0491 5.1687 23 6 3.8183 -1.3682 6.3715 24 6 4.0340 -0.0030 6.3964 25 6 4.2687 0.6813 5.2185 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.3927 1.0965 -2.1693 30 1 2.8390 2.7198 -1.4862 31 1 4.9215 1.5875 -0.8637 32 1 4.1085 -0.0371 -0.8359 33 1 3.8409 -0.5460 1.2909 34 1 8.6990 1.9312 1.5454 35 1 4.0768 -1.8952 3.0499 36 1 3.6683 -3.1156 5.1492 37 1 3.6345 -1.9027 7.2918 38 1 4.0187 0.5291 7.3362 39 1 4.4365 1.7480 5.2379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724139984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:05 Heat of formation + Delta-G solvation = -11.565630 kcal Electronic energy + Delta-G solvation = -19962.275451 eV Core-core repulsion = 17062.837778 eV Total energy + Delta-G solvation = -2899.437673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.64272 -39.82413 -37.20987 -35.79404 -33.96387 -31.65612 -31.25782 -28.48275 -27.59459 -25.61142 -25.23929 -23.96651 -23.10480 -21.39333 -20.56795 -19.10824 -17.71625 -17.51697 -16.73873 -16.65114 -15.99213 -15.79332 -15.60619 -15.11322 -14.83098 -14.60421 -14.23843 -14.14334 -13.86249 -13.62479 -13.48980 -13.18162 -12.95044 -12.75484 -12.50617 -12.14941 -11.98392 -11.82520 -11.79771 -11.49933 -11.24766 -11.12904 -10.72902 -10.25262 -9.61902 -9.37880 -8.88895 -8.34689 -6.36905 0.69965 0.77060 1.25235 1.30052 1.38352 2.26915 2.90138 2.97480 3.19752 3.55635 3.76275 3.92056 4.06022 4.18423 4.26449 4.31398 4.40518 4.47092 4.59459 4.62100 4.65166 4.68796 4.72225 4.91654 4.92976 4.94074 4.97379 5.12588 5.28023 5.32847 5.36008 5.41590 5.47701 5.76706 5.81926 6.00879 6.09359 6.34092 6.41695 6.57571 6.69618 6.80520 7.29010 8.81638 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.009346 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.263486 B = 2995.103978 C = 4448.921570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.083 3.917 4 H 0.084 0.916 5 C -0.146 4.146 6 C -0.153 4.153 7 C 0.066 3.934 8 H 0.083 0.917 9 N -0.653 5.653 10 C 0.212 3.788 11 H 0.044 0.956 12 C -0.520 4.520 13 H 0.033 0.967 14 C 0.026 3.974 15 N -0.938 5.938 16 Si 0.922 3.078 17 H -0.264 1.264 18 H -0.241 1.241 19 H -0.288 1.288 20 C -0.047 4.047 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.143 4.143 24 C -0.122 4.122 25 C -0.156 4.156 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.334 0.666 34 H 0.265 0.735 35 H 0.104 0.896 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.425 0.558 1.710 14.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C 0.023 3.977 4 H 0.102 0.898 5 C -0.184 4.184 6 C -0.192 4.192 7 C -0.046 4.046 8 H 0.101 0.899 9 N -0.281 5.281 10 C 0.103 3.897 11 H 0.062 0.938 12 C -0.560 4.560 13 H 0.051 0.949 14 C -0.173 4.173 15 N -0.578 5.578 16 Si 0.746 3.254 17 H -0.189 1.189 18 H -0.165 1.165 19 H -0.214 1.214 20 C -0.049 4.049 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.161 4.161 24 C -0.140 4.140 25 C -0.175 4.175 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.152 0.848 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.156 0.844 37 H 0.165 0.835 38 H 0.159 0.841 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.712 0.649 2.049 14.868 hybrid contribution 1.515 0.822 -0.566 1.814 sum -13.197 1.471 1.483 13.362 Atomic orbital electron populations 1.22919 0.80133 1.03365 1.00326 1.87890 1.20726 1.26442 1.94462 1.23346 0.93791 0.85443 0.95086 0.89828 1.23292 0.95752 1.01687 0.97636 1.23356 0.97383 1.00329 0.98119 1.23284 0.95363 0.95556 0.90390 0.89941 1.60820 1.47875 1.04940 1.14427 1.18587 0.88937 0.94201 0.87979 0.93846 1.21614 0.96524 0.95501 1.42323 0.94907 1.25814 0.94674 1.02388 0.94444 1.70059 1.08035 1.35093 1.44574 0.86140 0.78314 0.80272 0.80636 1.18881 1.16466 1.21427 1.20314 0.94078 0.94930 0.95529 1.20904 1.00744 0.93963 0.98309 1.21377 1.00057 1.00478 0.92418 1.21309 1.02060 0.94330 0.98386 1.21312 0.99803 0.95209 0.97663 1.21183 1.03316 0.99793 0.93197 0.93006 0.88925 0.93934 0.90032 0.88023 0.93876 0.91349 0.84815 0.92608 0.87737 0.84403 0.83519 0.84128 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.85 113.37 1.23 1.87 16 2 O -0.38 -11.72 10.19 -148.98 -1.52 -13.24 16 3 C 0.08 2.49 4.31 31.12 0.13 2.63 16 4 H 0.08 2.17 7.87 -2.39 -0.02 2.15 16 5 C -0.15 -4.08 7.91 31.12 0.25 -3.84 16 6 C -0.15 -5.67 7.63 31.12 0.24 -5.44 16 7 C 0.07 2.49 4.00 45.44 0.18 2.67 16 8 H 0.08 3.22 7.48 -2.39 -0.02 3.21 16 9 N -0.65 -27.49 5.53 -474.48 -2.62 -30.11 16 10 C 0.21 9.87 2.10 43.42 0.09 9.96 16 11 H 0.04 2.04 3.88 -2.39 -0.01 2.03 16 12 C -0.52 -28.83 8.69 25.60 0.22 -28.61 16 13 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 14 C 0.03 1.48 5.47 84.66 0.46 1.94 16 15 N -0.94 -57.53 13.96 21.45 0.30 -57.23 16 16 Si 0.92 42.99 27.08 68.60 1.86 44.85 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.24 -10.42 5.40 99.48 0.54 -9.88 16 19 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 20 C -0.05 -2.07 4.93 -19.87 -0.10 -2.17 16 21 C -0.12 -4.86 9.27 22.27 0.21 -4.65 16 22 C -0.13 -4.14 10.05 22.27 0.22 -3.91 16 23 C -0.14 -4.27 10.05 22.27 0.22 -4.04 16 24 C -0.12 -3.95 10.05 22.27 0.22 -3.73 16 25 C -0.16 -6.20 9.67 22.27 0.22 -5.99 16 26 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.07 2.70 7.82 -2.39 -0.02 2.68 16 33 H 0.33 14.82 7.37 -89.69 -0.66 14.16 16 34 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 35 H 0.10 4.28 7.45 -2.91 -0.02 4.26 16 36 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 37 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 39 H 0.11 4.21 6.76 -2.91 -0.02 4.19 16 Total: -1.00 -65.20 319.37 2.02 -63.18 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.20 Total: 35.86 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 3.80 Total: -43.30 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -2.32 Total: -87.34 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -1.52 Total: -13.24 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.86 Total: 44.85 kcal Total: -65.20 2.02 -63.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724139984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.611 kcal (2) G-P(sol) polarization free energy of solvation -65.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds