Wall clock time and date at job start Mon Mar 30 2020 06:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99987 * 2 1 4 4 H 1.08998 * 112.85387 * 18.79881 * 3 2 1 5 5 C 1.53783 * 113.61271 * 247.49792 * 3 2 1 6 6 C 1.53958 * 87.10930 * 270.80905 * 5 3 2 7 7 C 1.53781 * 113.61544 * 149.99819 * 3 2 1 8 8 H 1.09004 * 113.61633 * 203.74407 * 7 3 2 9 9 N 1.46900 * 113.61526 * 334.56820 * 7 3 2 10 10 C 1.46896 * 110.99769 * 203.46984 * 9 7 3 11 11 H 1.08998 * 109.48024 * 325.00001 * 10 9 7 12 12 C 1.50700 * 109.47122 * 85.00003 * 10 9 7 13 13 H 1.08002 * 120.00317 * 35.12794 * 12 10 9 14 14 C 1.37883 * 120.00079 * 215.12668 * 12 10 9 15 15 N 1.31510 * 120.00080 * 0.44817 * 14 12 10 16 16 Si 1.86797 * 120.00011 * 180.45238 * 14 12 10 17 17 H 1.48508 * 109.47226 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47389 * 119.99779 * 16 14 12 19 19 H 1.48499 * 109.47013 * 240.00158 * 16 14 12 20 20 C 1.50701 * 109.47060 * 204.99594 * 10 9 7 21 21 C 1.38233 * 119.99982 * 313.61520 * 20 10 9 22 22 C 1.38238 * 119.99913 * 179.74141 * 21 20 10 23 23 C 1.38234 * 119.99733 * 0.52890 * 22 21 20 24 24 C 1.38232 * 120.00247 * 359.74645 * 23 22 21 25 25 C 1.38234 * 119.99820 * 133.88552 * 20 10 9 26 26 H 1.09000 * 109.47002 * 60.00622 * 1 2 3 27 27 H 1.08998 * 109.46435 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47083 * 300.00469 * 1 2 3 29 29 H 1.09001 * 113.61840 * 25.42762 * 5 3 2 30 30 H 1.09002 * 113.61685 * 156.25349 * 5 3 2 31 31 H 1.09000 * 113.66585 * 220.10917 * 6 5 3 32 32 H 1.09000 * 113.61340 * 89.16123 * 6 5 3 33 33 H 1.00901 * 110.99720 * 327.42297 * 9 7 3 34 34 H 0.96996 * 120.00280 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.00374 * 359.97438 * 21 20 10 36 36 H 1.07997 * 120.00251 * 180.29752 * 22 21 20 37 37 H 1.07998 * 120.00100 * 179.76715 * 23 22 21 38 38 H 1.07999 * 120.00245 * 179.97438 * 24 23 22 39 39 H 1.07993 * 120.00402 * 0.02562 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0789 0.3237 5 6 2.7534 1.6488 -1.3018 6 6 4.0085 1.0342 -0.6557 7 6 3.3755 1.3719 0.7046 8 1 3.6305 2.3668 1.0698 9 7 3.5662 0.3259 1.7182 10 6 4.5698 0.7318 2.7111 11 1 5.3461 1.3213 2.2233 12 6 3.9095 1.5599 3.7832 13 1 2.9002 1.3347 4.0947 14 6 4.5939 2.6053 4.3663 15 7 5.8196 2.8852 3.9808 16 14 3.7800 3.6238 5.7041 17 1 2.4094 3.1092 5.9533 18 1 4.5788 3.5305 6.9524 19 1 3.7043 5.0418 5.2696 20 6 5.1864 -0.4949 3.3325 21 6 4.3798 -1.5324 3.7609 22 6 4.9458 -2.6600 4.3260 23 6 6.3177 -2.7452 4.4725 24 6 7.1240 -1.7052 4.0493 25 6 6.5584 -0.5801 3.4790 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 2.3927 1.0962 -2.1694 30 1 2.8377 2.7197 -1.4871 31 1 4.9233 1.5899 -0.8616 32 1 4.1125 -0.0358 -0.8353 33 1 2.6919 0.0901 2.1633 34 1 6.3009 3.6208 4.3908 35 1 3.3076 -1.4639 3.6508 36 1 4.3160 -3.4727 4.6564 37 1 6.7597 -3.6244 4.9174 38 1 8.1958 -1.7715 4.1641 39 1 7.1882 0.2326 3.1486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724139986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:08 Heat of formation + Delta-G solvation = 1.594669 kcal Electronic energy + Delta-G solvation = -19843.203173 eV Core-core repulsion = 16944.336173 eV Total energy + Delta-G solvation = -2898.867000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.17827 -38.15538 -35.71920 -34.19240 -31.83536 -29.91806 -29.60769 -26.64324 -26.17560 -24.32889 -23.68302 -22.32577 -21.39405 -19.70886 -18.95750 -16.73903 -16.29075 -16.10272 -15.20835 -14.95098 -14.68440 -14.16418 -14.00694 -13.68272 -13.27665 -13.23823 -12.57401 -12.37726 -12.31947 -11.78745 -11.60394 -11.38804 -11.25924 -11.04685 -10.98268 -10.59301 -10.40206 -10.26125 -10.14128 -9.82386 -9.63899 -9.40769 -9.07053 -8.59656 -7.92576 -7.63764 -7.18881 -6.11460 -4.23215 2.41421 2.47356 3.20547 3.29671 3.32555 3.98346 4.31461 4.84887 5.03423 5.11265 5.19767 5.28800 5.49913 5.52955 5.57130 5.69351 5.75536 5.77414 5.84404 5.85969 5.95954 6.12590 6.30976 6.41385 6.51340 6.53590 6.68421 6.81736 6.89429 6.95316 7.11885 7.28013 7.42340 7.51800 7.57255 7.71569 7.85332 8.06543 8.11554 8.27935 8.71584 8.92491 9.43823 10.89546 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.008293 C = 0.006144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.021895 B = 3375.635058 C = 4556.070189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.058 3.942 4 H 0.064 0.936 5 C -0.162 4.162 6 C -0.122 4.122 7 C 0.081 3.919 8 H 0.084 0.916 9 N -0.666 5.666 10 C 0.225 3.775 11 H 0.073 0.927 12 C -0.537 4.537 13 H 0.056 0.944 14 C 0.073 3.927 15 N -0.881 5.881 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.284 1.284 20 C -0.007 4.007 21 C -0.110 4.110 22 C -0.133 4.133 23 C -0.156 4.156 24 C -0.130 4.130 25 C -0.115 4.115 26 H 0.034 0.966 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.331 0.669 34 H 0.263 0.737 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.180 -3.986 -6.044 8.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C -0.001 4.001 4 H 0.082 0.918 5 C -0.200 4.200 6 C -0.160 4.160 7 C -0.030 4.030 8 H 0.102 0.898 9 N -0.295 5.295 10 C 0.117 3.883 11 H 0.091 0.909 12 C -0.576 4.576 13 H 0.075 0.925 14 C -0.131 4.131 15 N -0.518 5.518 16 Si 0.716 3.284 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.210 1.210 20 C -0.008 4.008 21 C -0.128 4.128 22 C -0.151 4.151 23 C -0.175 4.175 24 C -0.148 4.148 25 C -0.133 4.133 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.149 0.851 34 H 0.073 0.927 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.469 -4.383 -6.392 8.946 hybrid contribution -1.041 1.559 1.520 2.413 sum -5.510 -2.824 -4.872 7.879 Atomic orbital electron populations 1.22765 0.82197 1.02221 0.99453 1.87965 1.18341 1.26246 1.94396 1.23479 0.95058 0.84723 0.96865 0.91829 1.23334 0.98722 1.00594 0.97356 1.23003 0.95839 1.01191 0.96002 1.23070 0.91930 0.95948 0.92039 0.89830 1.60850 1.13041 1.38803 1.16835 1.18487 0.91872 0.88515 0.89447 0.90903 1.21707 1.00086 1.13500 1.22281 0.92540 1.24977 0.94815 0.96894 0.96450 1.69895 1.10568 1.29558 1.41739 0.86591 0.79741 0.79944 0.82086 1.19744 1.20832 1.20960 1.20446 0.92499 0.94379 0.93509 1.20818 0.99357 0.93540 0.99127 1.20937 0.94760 0.98148 1.01291 1.20763 0.93990 0.98808 1.03908 1.20956 0.98575 0.94747 1.00565 1.21045 0.95311 0.96919 1.00043 0.94741 0.89985 0.94239 0.91405 0.90033 0.92388 0.89595 0.85109 0.92674 0.87324 0.87815 0.87931 0.87740 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.85 101.05 1.10 1.47 16 2 O -0.35 -5.72 9.86 -35.23 -0.35 -6.07 16 3 C 0.06 0.93 4.17 -25.92 -0.11 0.82 16 4 H 0.06 0.96 7.87 -51.93 -0.41 0.55 16 5 C -0.16 -2.33 7.92 -25.82 -0.20 -2.54 16 6 C -0.12 -2.08 7.83 -25.83 -0.20 -2.28 16 7 C 0.08 1.55 3.79 -66.90 -0.25 1.30 16 8 H 0.08 1.78 7.82 -51.93 -0.41 1.37 16 9 N -0.67 -14.08 5.61 -101.32 -0.57 -14.65 16 10 C 0.22 5.39 2.16 -70.02 -0.15 5.24 16 11 H 0.07 1.95 6.80 -51.93 -0.35 1.60 16 12 C -0.54 -13.91 8.11 -34.44 -0.28 -14.19 16 13 H 0.06 1.48 7.75 -52.49 -0.41 1.07 16 14 C 0.07 1.93 5.46 -17.82 -0.10 1.84 16 15 N -0.88 -24.10 12.78 55.43 0.71 -23.39 16 16 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C -0.01 -0.16 4.93 -104.62 -0.52 -0.68 16 21 C -0.11 -2.35 9.26 -39.58 -0.37 -2.71 16 22 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 23 C -0.16 -2.89 10.05 -39.59 -0.40 -3.29 16 24 C -0.13 -2.56 10.05 -39.58 -0.40 -2.96 16 25 C -0.11 -2.57 9.67 -39.58 -0.38 -2.96 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.33 7.02 7.33 -39.29 -0.29 6.73 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.11 2.24 7.48 -52.49 -0.39 1.84 16 36 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.12 2.70 7.99 -52.49 -0.42 2.28 16 LS Contribution 325.94 15.07 4.91 4.91 Total: -1.00 -27.66 325.94 -9.01 -36.68 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.04 Total: 10.67 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -2.66 Total: -23.88 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.14 Total: -38.04 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.35 Total: -6.07 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.66 -9.01 -36.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724139986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.271 kcal (2) G-P(sol) polarization free energy of solvation -27.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds