Wall clock time and date at job start Mon Mar 30 2020 06:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99987 * 2 1 4 4 H 1.08998 * 112.85387 * 18.79881 * 3 2 1 5 5 C 1.53783 * 113.61271 * 247.49792 * 3 2 1 6 6 C 1.53958 * 87.10930 * 270.80905 * 5 3 2 7 7 C 1.53781 * 113.61544 * 149.99819 * 3 2 1 8 8 H 1.09004 * 113.61633 * 203.74407 * 7 3 2 9 9 N 1.46900 * 113.61526 * 334.56820 * 7 3 2 10 10 C 1.46896 * 110.99769 * 203.46984 * 9 7 3 11 11 H 1.08998 * 109.48024 * 325.00001 * 10 9 7 12 12 C 1.50700 * 109.47122 * 85.00003 * 10 9 7 13 13 H 1.08002 * 120.00317 * 35.12794 * 12 10 9 14 14 C 1.37883 * 120.00079 * 215.12668 * 12 10 9 15 15 N 1.31510 * 120.00080 * 0.44817 * 14 12 10 16 16 Si 1.86797 * 120.00011 * 180.45238 * 14 12 10 17 17 H 1.48508 * 109.47226 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47389 * 119.99779 * 16 14 12 19 19 H 1.48499 * 109.47013 * 240.00158 * 16 14 12 20 20 C 1.50701 * 109.47060 * 204.99594 * 10 9 7 21 21 C 1.38233 * 119.99982 * 313.61520 * 20 10 9 22 22 C 1.38238 * 119.99913 * 179.74141 * 21 20 10 23 23 C 1.38234 * 119.99733 * 0.52890 * 22 21 20 24 24 C 1.38232 * 120.00247 * 359.74645 * 23 22 21 25 25 C 1.38234 * 119.99820 * 133.88552 * 20 10 9 26 26 H 1.09000 * 109.47002 * 60.00622 * 1 2 3 27 27 H 1.08998 * 109.46435 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47083 * 300.00469 * 1 2 3 29 29 H 1.09001 * 113.61840 * 25.42762 * 5 3 2 30 30 H 1.09002 * 113.61685 * 156.25349 * 5 3 2 31 31 H 1.09000 * 113.66585 * 220.10917 * 6 5 3 32 32 H 1.09000 * 113.61340 * 89.16123 * 6 5 3 33 33 H 1.00901 * 110.99720 * 327.42297 * 9 7 3 34 34 H 0.96996 * 120.00280 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.00374 * 359.97438 * 21 20 10 36 36 H 1.07997 * 120.00251 * 180.29752 * 22 21 20 37 37 H 1.07998 * 120.00100 * 179.76715 * 23 22 21 38 38 H 1.07999 * 120.00245 * 179.97438 * 24 23 22 39 39 H 1.07993 * 120.00402 * 0.02562 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0789 0.3237 5 6 2.7534 1.6488 -1.3018 6 6 4.0085 1.0342 -0.6557 7 6 3.3755 1.3719 0.7046 8 1 3.6305 2.3668 1.0698 9 7 3.5662 0.3259 1.7182 10 6 4.5698 0.7318 2.7111 11 1 5.3461 1.3213 2.2233 12 6 3.9095 1.5599 3.7832 13 1 2.9002 1.3347 4.0947 14 6 4.5939 2.6053 4.3663 15 7 5.8196 2.8852 3.9808 16 14 3.7800 3.6238 5.7041 17 1 2.4094 3.1092 5.9533 18 1 4.5788 3.5305 6.9524 19 1 3.7043 5.0418 5.2696 20 6 5.1864 -0.4949 3.3325 21 6 4.3798 -1.5324 3.7609 22 6 4.9458 -2.6600 4.3260 23 6 6.3177 -2.7452 4.4725 24 6 7.1240 -1.7052 4.0493 25 6 6.5584 -0.5801 3.4790 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 2.3927 1.0962 -2.1694 30 1 2.8377 2.7197 -1.4871 31 1 4.9233 1.5899 -0.8616 32 1 4.1125 -0.0358 -0.8353 33 1 2.6919 0.0901 2.1633 34 1 6.3009 3.6208 4.3908 35 1 3.3076 -1.4639 3.6508 36 1 4.3160 -3.4727 4.6564 37 1 6.7597 -3.6244 4.9174 38 1 8.1958 -1.7715 4.1641 39 1 7.1882 0.2326 3.1486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724139986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:07 Heat of formation + Delta-G solvation = -14.247572 kcal Electronic energy + Delta-G solvation = -19843.890144 eV Core-core repulsion = 16944.336173 eV Total energy + Delta-G solvation = -2899.553971 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.56483 -39.73013 -37.09762 -35.84799 -33.74741 -31.52372 -31.19596 -28.09824 -27.64231 -25.63461 -25.33502 -23.92787 -22.98244 -21.42815 -20.31923 -18.71316 -17.66808 -17.56056 -16.70366 -16.64907 -16.03406 -15.70288 -15.55977 -15.12436 -14.97849 -14.46582 -14.07487 -13.94766 -13.91351 -13.43803 -13.22926 -12.98055 -12.89834 -12.64558 -12.47676 -12.11422 -12.01802 -11.80952 -11.70761 -11.42228 -11.28398 -11.01959 -10.64909 -10.28777 -9.53432 -9.28472 -8.96435 -8.10001 -6.30776 0.79220 0.86859 1.33590 1.36792 1.46173 2.36071 2.80094 3.08559 3.28918 3.71645 3.79163 3.90901 4.12201 4.23032 4.29765 4.34942 4.47921 4.56197 4.61600 4.63228 4.74253 4.81482 4.89275 4.93569 4.96021 5.07937 5.13077 5.19778 5.40776 5.43701 5.49199 5.52426 5.64715 5.83553 5.93234 6.04167 6.21715 6.34068 6.44999 6.53656 6.93215 6.99032 7.38902 8.87120 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.008293 C = 0.006144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.021895 B = 3375.635058 C = 4556.070189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.375 6.375 3 C 0.067 3.933 4 H 0.075 0.925 5 C -0.141 4.141 6 C -0.121 4.121 7 C 0.061 3.939 8 H 0.054 0.946 9 N -0.659 5.659 10 C 0.236 3.764 11 H 0.033 0.967 12 C -0.542 4.542 13 H 0.050 0.950 14 C 0.026 3.974 15 N -0.910 5.910 16 Si 0.947 3.053 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.278 1.278 20 C -0.036 4.036 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.148 4.148 24 C -0.130 4.130 25 C -0.142 4.142 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.328 0.672 34 H 0.263 0.737 35 H 0.109 0.891 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 -5.458 -5.841 10.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.293 6.293 3 C 0.008 3.992 4 H 0.093 0.907 5 C -0.179 4.179 6 C -0.160 4.160 7 C -0.050 4.050 8 H 0.071 0.929 9 N -0.288 5.288 10 C 0.127 3.873 11 H 0.051 0.949 12 C -0.581 4.581 13 H 0.068 0.932 14 C -0.175 4.175 15 N -0.548 5.548 16 Si 0.773 3.227 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.204 1.204 20 C -0.037 4.037 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.166 4.166 24 C -0.148 4.148 25 C -0.160 4.160 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.146 0.854 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.149 0.851 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.694 -5.860 -6.202 10.257 hybrid contribution -0.655 1.919 1.444 2.489 sum -6.349 -3.941 -4.758 8.859 Atomic orbital electron populations 1.22982 0.80008 1.03671 1.00461 1.87924 1.20743 1.26145 1.94515 1.23342 0.93739 0.85277 0.96807 0.90721 1.23255 0.95926 1.01674 0.97024 1.22939 0.97121 1.00730 0.95167 1.23194 0.95546 0.93973 0.92296 0.92858 1.60866 1.12302 1.39418 1.16216 1.18173 0.91302 0.88627 0.89155 0.94858 1.21899 0.99804 1.13932 1.22425 0.93166 1.25663 0.95342 0.98089 0.98447 1.70024 1.11725 1.30130 1.42905 0.85680 0.78887 0.78689 0.79452 1.19213 1.20989 1.20415 1.20452 0.93219 0.95027 0.95045 1.20918 0.99306 0.94103 0.99934 1.21350 0.95706 0.97925 0.99639 1.21234 0.93687 0.99404 1.02283 1.21269 1.00293 0.93872 0.99387 1.21036 0.95091 0.97874 1.02044 0.92806 0.88403 0.94102 0.89612 0.88236 0.92782 0.90619 0.85411 0.92822 0.87287 0.84223 0.83774 0.85085 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.85 113.37 1.23 1.79 16 2 O -0.38 -11.77 9.86 -148.98 -1.47 -13.23 16 3 C 0.07 2.12 4.17 31.12 0.13 2.25 16 4 H 0.07 2.16 7.87 -2.39 -0.02 2.14 16 5 C -0.14 -3.86 7.92 31.18 0.25 -3.61 16 6 C -0.12 -4.21 7.83 31.18 0.24 -3.96 16 7 C 0.06 2.42 3.79 45.44 0.17 2.59 16 8 H 0.05 2.42 7.82 -2.39 -0.02 2.40 16 9 N -0.66 -29.05 5.61 -474.48 -2.66 -31.71 16 10 C 0.24 11.95 2.16 43.42 0.09 12.04 16 11 H 0.03 1.93 6.80 -2.39 -0.02 1.91 16 12 C -0.54 -29.13 8.11 25.60 0.21 -28.92 16 13 H 0.05 2.70 7.75 -2.91 -0.02 2.68 16 14 C 0.03 1.40 5.46 84.66 0.46 1.87 16 15 N -0.91 -52.01 12.78 21.45 0.27 -51.73 16 16 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 C -0.04 -1.74 4.93 -19.87 -0.10 -1.84 16 21 C -0.12 -5.26 9.26 22.27 0.21 -5.05 16 22 C -0.13 -4.54 10.05 22.27 0.22 -4.32 16 23 C -0.15 -4.99 10.05 22.27 0.22 -4.77 16 24 C -0.13 -4.95 10.05 22.27 0.22 -4.73 16 25 C -0.14 -6.57 9.67 22.27 0.22 -6.36 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.33 14.37 7.33 -89.69 -0.66 13.72 16 34 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.11 4.49 7.48 -2.91 -0.02 4.47 16 36 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 37 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.09 4.62 7.99 -2.91 -0.02 4.60 16 Total: -1.00 -61.92 325.94 2.32 -59.60 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.37 Total: 34.68 kcal Atomic # 6 Polarization: -46.80 SS G_CDS: 3.78 Total: -43.02 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -2.39 Total: -83.44 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -1.47 Total: -13.23 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -61.92 2.32 -59.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724139986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.355 kcal (2) G-P(sol) polarization free energy of solvation -61.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds