Wall clock time and date at job start Mon Mar 30 2020 06:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99596 * 2 1 4 4 H 1.08998 * 112.85165 * 18.80739 * 3 2 1 5 5 C 1.53778 * 113.61416 * 247.49326 * 3 2 1 6 6 C 1.53784 * 87.08274 * 220.02276 * 5 3 2 7 7 C 1.53780 * 113.60841 * 150.00066 * 3 2 1 8 8 H 1.08993 * 113.61653 * 25.43447 * 7 3 2 9 9 N 1.46903 * 113.61494 * 254.53036 * 7 3 2 10 10 C 1.46900 * 111.00103 * 155.00452 * 9 7 3 11 11 H 1.08996 * 109.47080 * 34.99953 * 10 9 7 12 12 C 1.50701 * 109.46575 * 274.99621 * 10 9 7 13 13 H 1.07994 * 120.00522 * 304.77817 * 12 10 9 14 14 C 1.37882 * 119.99412 * 124.78264 * 12 10 9 15 15 N 1.31514 * 119.99739 * 172.94903 * 14 12 10 16 16 Si 1.86796 * 120.00200 * 352.95306 * 14 12 10 17 17 H 1.48495 * 109.47036 * 85.60810 * 16 14 12 18 18 H 1.48503 * 109.47159 * 205.60636 * 16 14 12 19 19 H 1.48497 * 109.47322 * 325.60468 * 16 14 12 20 20 C 1.50698 * 109.46937 * 155.00227 * 10 9 7 21 21 C 1.38235 * 120.00643 * 45.74190 * 20 10 9 22 22 C 1.38238 * 120.00099 * 179.76925 * 21 20 10 23 23 C 1.38234 * 119.99711 * 0.50603 * 22 21 20 24 24 C 1.38236 * 120.00340 * 359.74401 * 23 22 21 25 25 C 1.38235 * 119.99789 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46987 * 59.99671 * 1 2 3 27 27 H 1.09003 * 109.47232 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47239 * 299.99835 * 1 2 3 29 29 H 1.08999 * 113.61655 * 334.57622 * 5 3 2 30 30 H 1.09008 * 113.61136 * 105.47498 * 5 3 2 31 31 H 1.08997 * 113.61176 * 270.88593 * 6 5 3 32 32 H 1.08993 * 113.68739 * 139.99111 * 6 5 3 33 33 H 1.00905 * 110.99708 * 278.95927 * 9 7 3 34 34 H 0.96992 * 120.00241 * 179.97438 * 15 14 12 35 35 H 1.08001 * 119.99183 * 359.97438 * 21 20 10 36 36 H 1.07993 * 119.99745 * 180.23134 * 22 21 20 37 37 H 1.08000 * 119.99320 * 179.73182 * 23 22 21 38 38 H 1.07998 * 120.00161 * 179.97438 * 24 23 22 39 39 H 1.08001 * 119.99648 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3238 5 6 2.7535 1.6489 -1.3017 6 6 3.8227 2.3182 -0.4221 7 6 3.3755 1.3719 0.7045 8 1 3.9088 0.4214 0.7137 9 7 3.3254 2.0122 2.0257 10 6 4.4287 1.5485 2.8776 11 1 5.3138 1.3777 2.2649 12 6 4.0323 0.2632 3.5573 13 1 3.1287 0.2206 4.1472 14 6 4.8234 -0.8584 3.4259 15 7 4.5554 -1.9380 4.1275 16 14 6.2759 -0.8446 2.2514 17 1 7.4634 -0.2777 2.9395 18 1 6.5726 -2.2326 1.8147 19 1 5.9464 -0.0126 1.0664 20 6 4.7328 2.5944 3.9191 21 6 3.7021 3.1932 4.6190 22 6 3.9815 4.1491 5.5777 23 6 5.2910 4.5137 5.8292 24 6 6.3214 3.9186 5.1257 25 6 6.0423 2.9592 4.1703 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1166 0.7741 -1.8410 30 1 2.2140 2.3478 -1.9411 31 1 3.6222 3.3694 -0.2148 32 1 4.8430 2.1409 -0.7620 33 1 3.3322 3.0177 1.9407 34 1 5.1116 -2.7271 4.0349 35 1 2.6787 2.9118 4.4190 36 1 3.1764 4.6143 6.1271 37 1 5.5089 5.2636 6.5752 38 1 7.3444 4.2037 5.3219 39 1 6.8474 2.4946 3.6204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724139988.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:09 Heat of formation + Delta-G solvation = 6.359063 kcal Electronic energy + Delta-G solvation = -19865.595730 eV Core-core repulsion = 16966.935330 eV Total energy + Delta-G solvation = -2898.660400 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.26518 -38.46290 -36.00678 -34.25370 -31.97294 -30.27177 -29.85707 -26.75778 -26.65514 -24.02222 -23.82391 -22.27714 -21.73613 -19.85677 -19.33581 -16.96250 -16.60216 -16.28590 -15.46259 -14.69468 -14.56562 -14.50699 -14.14366 -14.02960 -13.29724 -12.80296 -12.71752 -12.67668 -12.63942 -12.11566 -11.99727 -11.77855 -11.31354 -11.13848 -10.95794 -10.75382 -10.72871 -10.41411 -10.08540 -9.93347 -9.76345 -9.52628 -9.05954 -8.58704 -8.26433 -7.92848 -7.32932 -6.11165 -4.07262 2.05339 2.09663 3.22787 3.27788 3.32407 4.21808 4.35143 4.48390 4.92048 4.96307 5.08211 5.23823 5.36015 5.41013 5.49646 5.56330 5.61266 5.68839 5.69444 5.80876 5.92619 5.96392 5.97977 6.11847 6.18911 6.24468 6.25399 6.48902 6.52495 6.63956 6.69779 6.79303 7.09992 7.14727 7.42267 7.52698 7.71604 7.73090 7.96558 8.29722 8.66171 9.02547 9.51085 11.02005 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.007966 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.707224 B = 3514.091625 C = 4304.467908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.369 6.369 3 C 0.074 3.926 4 H 0.085 0.915 5 C -0.156 4.156 6 C -0.174 4.174 7 C 0.085 3.915 8 H 0.107 0.893 9 N -0.666 5.666 10 C 0.214 3.786 11 H 0.020 0.980 12 C -0.476 4.476 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.889 5.889 16 Si 0.867 3.133 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.043 4.043 21 C -0.102 4.102 22 C -0.126 4.126 23 C -0.147 4.147 24 C -0.124 4.124 25 C -0.131 4.131 26 H 0.031 0.969 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.315 0.685 34 H 0.265 0.735 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.168 10.488 -6.375 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.287 6.287 3 C 0.015 3.985 4 H 0.103 0.897 5 C -0.194 4.194 6 C -0.214 4.214 7 C -0.026 4.026 8 H 0.125 0.875 9 N -0.295 5.295 10 C 0.107 3.893 11 H 0.037 0.963 12 C -0.515 4.515 13 H 0.099 0.901 14 C -0.129 4.129 15 N -0.526 5.526 16 Si 0.695 3.305 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.044 4.044 21 C -0.120 4.120 22 C -0.145 4.145 23 C -0.166 4.166 24 C -0.142 4.142 25 C -0.150 4.150 26 H 0.049 0.951 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.075 0.925 35 H 0.143 0.857 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.450 9.648 -6.047 11.647 hybrid contribution 1.400 0.445 -0.905 1.725 sum -1.050 10.094 -6.952 12.301 Atomic orbital electron populations 1.22691 0.82215 1.02131 0.99224 1.88000 1.18778 1.27562 1.94328 1.24023 0.94825 0.85017 0.94619 0.89738 1.23301 0.98319 1.00615 0.97178 1.23474 0.99063 0.99344 0.99481 1.23219 0.94381 0.98266 0.86756 0.87488 1.60841 1.49104 1.08499 1.11100 1.18773 0.89035 0.92755 0.88731 0.96259 1.20792 1.09574 0.91305 1.29806 0.90122 1.25067 0.96959 0.95588 0.95239 1.69877 1.39420 1.03542 1.39772 0.87055 0.83591 0.77404 0.82449 1.20214 1.21283 1.19030 1.20548 0.92488 0.93125 0.98254 1.20997 0.99775 0.95725 0.95519 1.21072 0.96133 0.98703 0.98546 1.20881 0.93219 1.01483 1.00970 1.20943 0.98335 0.97764 0.97146 1.20994 0.96482 0.98115 0.99366 0.95061 0.90288 0.93979 0.89651 0.91714 0.90189 0.91393 0.86707 0.92516 0.85727 0.87115 0.87337 0.87223 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 101.05 1.10 1.59 16 2 O -0.37 -6.94 10.71 -35.23 -0.38 -7.31 16 3 C 0.07 1.26 4.11 -25.92 -0.11 1.15 16 4 H 0.08 1.32 7.87 -51.93 -0.41 0.91 16 5 C -0.16 -2.24 7.91 -25.92 -0.21 -2.45 16 6 C -0.17 -2.66 7.70 -25.92 -0.20 -2.86 16 7 C 0.09 1.64 3.74 -66.90 -0.25 1.39 16 8 H 0.11 2.45 6.19 -51.93 -0.32 2.13 16 9 N -0.67 -13.43 5.95 -101.33 -0.60 -14.03 16 10 C 0.21 4.89 2.04 -70.02 -0.14 4.75 16 11 H 0.02 0.46 4.17 -51.93 -0.22 0.24 16 12 C -0.48 -13.18 8.91 -34.44 -0.31 -13.49 16 13 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.89 -27.06 13.96 55.43 0.77 -26.28 16 16 Si 0.87 21.28 26.40 -169.99 -4.49 16.79 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.26 -6.14 5.78 56.52 0.33 -5.82 16 20 C -0.04 -0.90 4.65 -104.62 -0.49 -1.39 16 21 C -0.10 -1.97 9.08 -39.58 -0.36 -2.33 16 22 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 23 C -0.15 -2.36 10.05 -39.58 -0.40 -2.76 16 24 C -0.12 -2.10 10.05 -39.58 -0.40 -2.49 16 25 C -0.13 -2.56 9.67 -39.58 -0.38 -2.95 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.08 1.08 7.82 -51.93 -0.41 0.67 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.31 5.60 7.61 -39.29 -0.30 5.30 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.12 2.42 7.90 -52.49 -0.41 2.00 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.11 2.09 7.99 -52.49 -0.42 1.67 16 LS Contribution 320.22 15.07 4.83 4.83 Total: -1.00 -30.57 320.22 -8.43 -39.00 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.92 Total: 9.32 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -2.63 Total: -22.30 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.17 Total: -40.32 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.38 Total: -7.31 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.49 Total: 16.79 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.57 -8.43 -39.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724139988.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.355 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds