Wall clock time and date at job start Mon Mar 30 2020 06:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99596 * 2 1 4 4 H 1.08998 * 112.85165 * 18.80739 * 3 2 1 5 5 C 1.53778 * 113.61416 * 247.49326 * 3 2 1 6 6 C 1.53784 * 87.08274 * 220.02276 * 5 3 2 7 7 C 1.53780 * 113.60841 * 150.00066 * 3 2 1 8 8 H 1.08993 * 113.61653 * 25.43447 * 7 3 2 9 9 N 1.46903 * 113.61494 * 254.53036 * 7 3 2 10 10 C 1.46900 * 111.00103 * 155.00452 * 9 7 3 11 11 H 1.08996 * 109.47080 * 34.99953 * 10 9 7 12 12 C 1.50701 * 109.46575 * 274.99621 * 10 9 7 13 13 H 1.07994 * 120.00522 * 304.77817 * 12 10 9 14 14 C 1.37882 * 119.99412 * 124.78264 * 12 10 9 15 15 N 1.31514 * 119.99739 * 172.94903 * 14 12 10 16 16 Si 1.86796 * 120.00200 * 352.95306 * 14 12 10 17 17 H 1.48495 * 109.47036 * 85.60810 * 16 14 12 18 18 H 1.48503 * 109.47159 * 205.60636 * 16 14 12 19 19 H 1.48497 * 109.47322 * 325.60468 * 16 14 12 20 20 C 1.50698 * 109.46937 * 155.00227 * 10 9 7 21 21 C 1.38235 * 120.00643 * 45.74190 * 20 10 9 22 22 C 1.38238 * 120.00099 * 179.76925 * 21 20 10 23 23 C 1.38234 * 119.99711 * 0.50603 * 22 21 20 24 24 C 1.38236 * 120.00340 * 359.74401 * 23 22 21 25 25 C 1.38235 * 119.99789 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46987 * 59.99671 * 1 2 3 27 27 H 1.09003 * 109.47232 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47239 * 299.99835 * 1 2 3 29 29 H 1.08999 * 113.61655 * 334.57622 * 5 3 2 30 30 H 1.09008 * 113.61136 * 105.47498 * 5 3 2 31 31 H 1.08997 * 113.61176 * 270.88593 * 6 5 3 32 32 H 1.08993 * 113.68739 * 139.99111 * 6 5 3 33 33 H 1.00905 * 110.99708 * 278.95927 * 9 7 3 34 34 H 0.96992 * 120.00241 * 179.97438 * 15 14 12 35 35 H 1.08001 * 119.99183 * 359.97438 * 21 20 10 36 36 H 1.07993 * 119.99745 * 180.23134 * 22 21 20 37 37 H 1.08000 * 119.99320 * 179.73182 * 23 22 21 38 38 H 1.07998 * 120.00161 * 179.97438 * 24 23 22 39 39 H 1.08001 * 119.99648 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3238 5 6 2.7535 1.6489 -1.3017 6 6 3.8227 2.3182 -0.4221 7 6 3.3755 1.3719 0.7045 8 1 3.9088 0.4214 0.7137 9 7 3.3254 2.0122 2.0257 10 6 4.4287 1.5485 2.8776 11 1 5.3138 1.3777 2.2649 12 6 4.0323 0.2632 3.5573 13 1 3.1287 0.2206 4.1472 14 6 4.8234 -0.8584 3.4259 15 7 4.5554 -1.9380 4.1275 16 14 6.2759 -0.8446 2.2514 17 1 7.4634 -0.2777 2.9395 18 1 6.5726 -2.2326 1.8147 19 1 5.9464 -0.0126 1.0664 20 6 4.7328 2.5944 3.9191 21 6 3.7021 3.1932 4.6190 22 6 3.9815 4.1491 5.5777 23 6 5.2910 4.5137 5.8292 24 6 6.3214 3.9186 5.1257 25 6 6.0423 2.9592 4.1703 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1166 0.7741 -1.8410 30 1 2.2140 2.3478 -1.9411 31 1 3.6222 3.3694 -0.2148 32 1 4.8430 2.1409 -0.7620 33 1 3.3322 3.0177 1.9407 34 1 5.1116 -2.7271 4.0349 35 1 2.6787 2.9118 4.4190 36 1 3.1764 4.6143 6.1271 37 1 5.5089 5.2636 6.5752 38 1 7.3444 4.2037 5.3219 39 1 6.8474 2.4946 3.6204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724139988.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:09 Heat of formation + Delta-G solvation = -14.299857 kcal Electronic energy + Delta-G solvation = -19866.491568 eV Core-core repulsion = 16966.935330 eV Total energy + Delta-G solvation = -2899.556238 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.66938 -39.85939 -37.42448 -35.87599 -34.01355 -31.68074 -31.29264 -28.64401 -27.85112 -25.40441 -25.27358 -23.81329 -23.14063 -21.52719 -20.67855 -19.05852 -17.95917 -17.71487 -16.82129 -16.37058 -16.05489 -15.97480 -15.67149 -15.39503 -14.90411 -14.59208 -14.26807 -14.10598 -13.92651 -13.62222 -13.40929 -13.21463 -12.88660 -12.59139 -12.54892 -12.26750 -12.05181 -11.89472 -11.83977 -11.51052 -11.44009 -11.25892 -10.79161 -10.32391 -9.66534 -9.40273 -8.95556 -8.31219 -6.30977 0.63727 0.68072 1.23485 1.27078 1.34406 2.27230 2.87066 3.03375 3.18117 3.61654 3.67895 3.77732 4.01295 4.08258 4.18105 4.25852 4.34323 4.42969 4.45179 4.58557 4.61996 4.68418 4.75598 4.83535 4.85887 4.89281 4.92750 4.98421 5.16479 5.25827 5.31612 5.35421 5.54182 5.71858 5.75077 5.94097 6.10965 6.29348 6.45967 6.51608 6.71117 6.97216 7.32087 8.86516 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.007966 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.707224 B = 3514.091625 C = 4304.467908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.408 6.408 3 C 0.071 3.929 4 H 0.099 0.901 5 C -0.139 4.139 6 C -0.158 4.158 7 C 0.060 3.940 8 H 0.064 0.936 9 N -0.670 5.670 10 C 0.224 3.776 11 H 0.013 0.987 12 C -0.473 4.473 13 H 0.029 0.971 14 C 0.015 3.985 15 N -0.944 5.944 16 Si 0.928 3.072 17 H -0.263 1.263 18 H -0.289 1.289 19 H -0.248 1.248 20 C -0.073 4.073 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.136 4.136 24 C -0.121 4.121 25 C -0.149 4.149 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.332 0.668 34 H 0.264 0.736 35 H 0.111 0.889 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 13.812 -7.279 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C 0.013 3.987 4 H 0.116 0.884 5 C -0.177 4.177 6 C -0.197 4.197 7 C -0.051 4.051 8 H 0.082 0.918 9 N -0.301 5.301 10 C 0.116 3.884 11 H 0.030 0.970 12 C -0.512 4.512 13 H 0.048 0.952 14 C -0.182 4.182 15 N -0.585 5.585 16 Si 0.753 3.247 17 H -0.188 1.188 18 H -0.216 1.216 19 H -0.172 1.172 20 C -0.074 4.074 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.154 4.154 24 C -0.139 4.139 25 C -0.168 4.168 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.699 13.011 -6.970 14.858 hybrid contribution 1.043 -0.479 -0.514 1.258 sum -0.656 12.532 -7.484 14.612 Atomic orbital electron populations 1.22872 0.80214 1.03123 1.00471 1.87947 1.21196 1.28959 1.94623 1.24152 0.94001 0.84785 0.95793 0.88351 1.23199 0.97363 1.00885 0.96249 1.23419 0.99508 0.99695 0.97124 1.23364 0.96579 0.97582 0.87550 0.91813 1.60570 1.48059 1.09595 1.11840 1.18468 0.89139 0.91496 0.89261 0.96951 1.20939 1.07500 0.93962 1.28801 0.95238 1.25853 1.00218 0.95154 0.97008 1.70038 1.41505 1.04522 1.42436 0.86056 0.80304 0.77424 0.80899 1.18780 1.21586 1.17248 1.20422 0.93904 0.94354 0.98727 1.21004 0.98833 0.96973 0.96736 1.21420 0.97851 0.97458 0.97434 1.21373 0.92318 1.01131 1.00582 1.21327 1.00435 0.96370 0.95778 1.21143 0.95634 0.99366 1.00626 0.92059 0.89607 0.94340 0.90241 0.88252 0.87773 0.91260 0.84909 0.92683 0.87056 0.84103 0.83303 0.83990 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.85 113.37 1.23 2.06 16 2 O -0.41 -15.50 10.71 -148.98 -1.60 -17.10 16 3 C 0.07 2.36 4.11 31.12 0.13 2.48 16 4 H 0.10 2.91 7.87 -2.39 -0.02 2.89 16 5 C -0.14 -3.64 7.91 31.12 0.25 -3.40 16 6 C -0.16 -4.48 7.70 31.12 0.24 -4.24 16 7 C 0.06 2.33 3.74 45.44 0.17 2.50 16 8 H 0.06 3.02 6.19 -2.39 -0.01 3.01 16 9 N -0.67 -27.47 5.95 -474.49 -2.83 -30.29 16 10 C 0.22 10.54 2.04 43.42 0.09 10.63 16 11 H 0.01 0.61 4.17 -2.39 -0.01 0.60 16 12 C -0.47 -27.74 8.91 25.60 0.23 -27.51 16 13 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 14 C 0.02 0.92 5.47 84.66 0.46 1.38 16 15 N -0.94 -60.92 13.96 21.45 0.30 -60.62 16 16 Si 0.93 45.58 26.40 68.60 1.81 47.39 16 17 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 19 H -0.25 -11.36 5.78 99.48 0.57 -10.78 16 20 C -0.07 -3.08 4.65 -19.87 -0.09 -3.17 16 21 C -0.12 -4.49 9.08 22.27 0.20 -4.29 16 22 C -0.12 -3.81 10.05 22.27 0.22 -3.59 16 23 C -0.14 -3.79 10.05 22.27 0.22 -3.56 16 24 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 25 C -0.15 -5.65 9.67 22.27 0.22 -5.44 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.10 2.45 7.82 -2.39 -0.02 2.43 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.33 11.62 7.61 -89.69 -0.68 10.94 16 34 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 35 H 0.11 4.46 7.90 -2.91 -0.02 4.43 16 36 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 39 H 0.11 3.98 7.99 -2.91 -0.02 3.96 16 Total: -1.00 -71.85 320.22 1.70 -70.15 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.22 Total: 30.07 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 3.79 Total: -39.61 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -2.53 Total: -90.91 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -1.60 Total: -17.10 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.81 Total: 47.39 kcal Total: -71.85 1.70 -70.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724139988.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.850 kcal (2) G-P(sol) polarization free energy of solvation -71.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds