Wall clock time and date at job start Mon Mar 30 2020 06:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00291 * 2 1 4 4 H 1.09001 * 112.90497 * 338.25536 * 3 2 1 5 5 C 1.53782 * 113.61236 * 109.50306 * 3 2 1 6 6 C 1.53787 * 87.17240 * 89.15999 * 5 3 2 7 7 C 1.53782 * 87.07793 * 25.39014 * 6 5 3 8 8 H 1.09000 * 113.62192 * 89.12037 * 7 6 5 9 9 N 1.46901 * 113.61200 * 219.93700 * 7 6 5 10 10 C 1.46909 * 110.99911 * 255.49686 * 9 7 6 11 11 C 1.50701 * 109.47068 * 180.02562 * 10 9 7 12 12 C 1.38641 * 119.74678 * 269.72559 * 11 10 9 13 13 C 1.37617 * 120.24829 * 179.72221 * 12 11 10 14 14 C 1.40714 * 119.74149 * 0.52797 * 13 12 11 15 15 C 1.41395 * 120.24338 * 179.72682 * 14 13 12 16 16 H 1.07996 * 120.00562 * 155.30875 * 15 14 13 17 17 C 1.39949 * 119.99676 * 335.30879 * 15 14 13 18 18 N 1.30823 * 120.00144 * 342.22765 * 17 15 14 19 19 Si 1.86806 * 119.99797 * 162.23398 * 17 15 14 20 20 H 1.48508 * 109.46980 * 94.66482 * 19 17 15 21 21 H 1.48497 * 109.46866 * 214.65841 * 19 17 15 22 22 H 1.48499 * 109.47161 * 334.66316 * 19 17 15 23 23 C 1.40719 * 119.51554 * 359.74456 * 14 13 12 24 24 C 1.37612 * 119.74129 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.47151 * 59.99701 * 1 2 3 26 26 H 1.09002 * 109.47484 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46864 * 299.99639 * 1 2 3 28 28 H 1.08996 * 113.61835 * 334.56651 * 5 3 2 29 29 H 1.09008 * 113.61306 * 203.74467 * 5 3 2 30 30 H 1.08999 * 113.61086 * 139.93358 * 6 5 3 31 31 H 1.08995 * 113.61493 * 270.75542 * 6 5 3 32 32 H 1.00892 * 111.00240 * 131.54108 * 9 7 6 33 33 H 1.09004 * 109.46864 * 299.99797 * 10 9 7 34 34 H 1.08993 * 109.47169 * 59.99979 * 10 9 7 35 35 H 1.08001 * 119.87134 * 359.97438 * 12 11 10 36 36 H 1.07996 * 120.12925 * 180.27097 * 13 12 11 37 37 H 0.97000 * 120.00134 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.12559 * 180.02562 * 23 14 13 39 39 H 1.08003 * 119.87314 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3309 2.0723 -0.3720 5 6 2.6906 1.6768 1.3282 6 6 3.9739 1.0495 0.7585 7 6 3.4100 1.3572 -0.6388 8 1 3.6821 2.3446 -1.0118 9 7 3.6525 0.2905 -1.6192 10 6 4.7269 0.6642 -2.5489 11 6 4.9462 -0.4516 -3.5378 12 6 5.8618 -1.4530 -3.2531 13 6 6.0661 -2.4799 -4.1462 14 6 5.3495 -2.5050 -5.3569 15 6 5.5553 -3.5519 -6.2847 16 1 4.7781 -3.8103 -6.9886 17 6 6.7662 -4.2535 -6.2908 18 7 7.8199 -3.7447 -5.7056 19 14 6.8781 -5.9163 -7.1347 20 1 7.3762 -5.7349 -8.5219 21 1 7.8139 -6.7907 -6.3832 22 1 5.5332 -6.5450 -7.1698 23 6 4.4269 -1.4803 -5.6378 24 6 4.2354 -0.4658 -4.7279 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2885 1.1427 2.1891 29 1 2.7665 2.7514 1.4944 30 1 4.8774 1.6102 0.9978 31 1 4.0691 -0.0160 0.9674 32 1 2.8068 0.0589 -2.1182 33 1 4.4459 1.5722 -3.0826 34 1 5.6458 0.8408 -1.9901 35 1 6.4139 -1.4291 -2.3252 36 1 6.7766 -3.2612 -3.9205 37 1 8.6591 -4.2311 -5.7095 38 1 3.8713 -1.4900 -6.5639 39 1 3.5274 0.3215 -4.9411 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724141751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:39 Heat of formation + Delta-G solvation = -24.072479 kcal Electronic energy + Delta-G solvation = -18917.145182 eV Core-core repulsion = 16017.165171 eV Total energy + Delta-G solvation = -2899.980011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.58142 -39.44525 -37.11486 -35.94402 -34.53386 -31.63862 -31.07761 -28.19755 -27.68266 -25.68202 -25.43709 -23.86210 -22.82405 -21.64753 -20.37824 -19.20399 -17.67963 -17.35114 -17.07884 -16.29788 -15.84543 -15.74323 -15.56172 -15.46412 -14.92740 -14.50854 -14.25247 -14.17837 -13.79441 -13.34340 -13.23928 -12.86865 -12.77067 -12.71050 -12.51812 -12.27218 -12.23472 -11.84625 -11.63932 -11.36528 -11.23999 -11.10331 -10.96813 -10.37238 -9.32662 -9.29521 -9.06583 -8.62214 -6.31525 0.97082 1.17093 1.37921 1.49171 1.54751 2.21652 2.68958 2.77667 3.50052 3.70354 3.73873 3.86784 4.02622 4.14827 4.34577 4.35275 4.46186 4.54490 4.58751 4.59247 4.62810 4.71913 4.85761 4.88393 4.97604 5.08072 5.11041 5.17654 5.31814 5.40205 5.43978 5.48820 5.73407 5.96768 6.12226 6.20607 6.28681 6.40835 6.47662 6.62925 6.73187 6.96165 7.06639 8.35177 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033335 B = 0.003781 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.765946 B = 7404.265963 C = 7621.264825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.383 6.383 3 C 0.061 3.939 4 H 0.088 0.912 5 C -0.148 4.148 6 C -0.125 4.125 7 C 0.051 3.949 8 H 0.090 0.910 9 N -0.674 5.674 10 C 0.131 3.869 11 C -0.199 4.199 12 C -0.087 4.087 13 C -0.191 4.191 14 C 0.079 3.921 15 C -0.505 4.505 16 H 0.074 0.926 17 C 0.035 3.965 18 N -0.827 5.827 19 Si 0.982 3.018 20 H -0.261 1.261 21 H -0.266 1.266 22 H -0.259 1.259 23 C -0.243 4.243 24 C -0.085 4.085 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.340 0.660 33 H 0.034 0.966 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.287 0.713 38 H 0.096 0.904 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.763 9.712 10.631 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.301 6.301 3 C 0.002 3.998 4 H 0.105 0.895 5 C -0.186 4.186 6 C -0.164 4.164 7 C -0.059 4.059 8 H 0.108 0.892 9 N -0.306 5.306 10 C 0.003 3.997 11 C -0.200 4.200 12 C -0.106 4.106 13 C -0.211 4.211 14 C 0.077 3.923 15 C -0.534 4.534 16 H 0.092 0.908 17 C -0.180 4.180 18 N -0.453 5.453 19 Si 0.802 3.198 20 H -0.186 1.186 21 H -0.190 1.190 22 H -0.183 1.183 23 C -0.263 4.263 24 C -0.104 4.104 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.159 0.841 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.993 9.166 11.091 16.967 hybrid contribution -0.204 -0.103 -1.083 1.106 sum -9.197 9.063 10.008 16.337 Atomic orbital electron populations 1.22960 0.79920 1.03441 1.00752 1.87971 1.20814 1.26756 1.94555 1.23481 0.93823 0.85384 0.97138 0.89457 1.23303 0.96253 1.02023 0.97025 1.22918 0.97692 1.00709 0.95037 1.23573 0.95519 0.94006 0.92800 0.89238 1.60503 1.10708 1.40480 1.18865 1.20522 0.94896 0.93115 0.91170 1.19364 1.03127 1.00374 0.97175 1.20723 0.97733 0.94708 0.97439 1.21257 1.04509 1.00317 0.95005 1.17960 0.90816 0.91610 0.91918 1.19839 1.00940 1.15715 1.16938 0.90776 1.26766 0.94097 1.02220 0.94882 1.69888 1.01337 1.38050 1.36064 0.85210 0.79322 0.76610 0.78644 1.18578 1.19028 1.18319 1.21154 1.06762 0.97794 1.00576 1.20679 0.98442 0.97427 0.93837 0.93326 0.89335 0.92741 0.90782 0.87186 0.91195 0.91643 0.84100 0.94778 0.91780 0.88375 0.88528 0.90216 0.88587 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.86 113.37 1.23 1.68 16 2 O -0.38 -9.71 9.91 -148.98 -1.48 -11.19 16 3 C 0.06 1.26 4.17 31.18 0.13 1.39 16 4 H 0.09 1.43 7.90 -2.39 -0.02 1.41 16 5 C -0.15 -2.63 7.91 31.12 0.25 -2.39 16 6 C -0.13 -2.94 7.82 31.12 0.24 -2.69 16 7 C 0.05 1.24 4.06 45.50 0.18 1.43 16 8 H 0.09 1.90 7.89 -2.39 -0.02 1.88 16 9 N -0.67 -21.54 6.24 -492.53 -3.07 -24.61 16 10 C 0.13 4.51 5.67 85.56 0.48 4.99 16 11 C -0.20 -8.69 5.41 -19.67 -0.11 -8.80 16 12 C -0.09 -4.29 9.67 22.22 0.21 -4.07 16 13 C -0.19 -10.65 8.70 22.73 0.20 -10.45 16 14 C 0.08 4.48 5.57 -21.29 -0.12 4.37 16 15 C -0.50 -28.44 9.05 23.46 0.21 -28.22 16 16 H 0.07 4.02 7.91 -2.91 -0.02 4.00 16 17 C 0.03 1.83 5.14 85.26 0.44 2.26 16 18 N -0.83 -45.00 10.97 21.83 0.24 -44.76 16 19 Si 0.98 39.54 29.60 68.60 2.03 41.57 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 23 C -0.24 -12.39 9.80 22.73 0.22 -12.17 16 24 C -0.09 -3.80 9.67 22.22 0.21 -3.58 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.34 11.23 8.23 -89.70 -0.74 10.49 16 33 H 0.03 1.06 8.07 -2.38 -0.02 1.04 16 34 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 35 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 36 H 0.10 5.64 6.18 -2.91 -0.02 5.62 16 37 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 38 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -63.18 325.22 1.81 -61.38 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.29 Total: 33.86 kcal Atomic # 6 Polarization: -60.05 SS G_CDS: 3.80 Total: -56.26 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -2.83 Total: -69.37 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -1.48 Total: -11.19 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -63.18 1.81 -61.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724141751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.304 kcal (2) G-P(sol) polarization free energy of solvation -63.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds