Wall clock time and date at job start Mon Mar 30 2020 06:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00045 * 2 1 4 4 H 1.09000 * 112.85073 * 21.69170 * 3 2 1 5 5 C 1.53785 * 113.61297 * 250.49449 * 3 2 1 6 6 C 1.53783 * 87.08106 * 270.88471 * 5 3 2 7 7 C 1.53778 * 87.08034 * 334.56735 * 6 5 3 8 8 H 1.09004 * 113.61650 * 270.88200 * 7 6 5 9 9 N 1.46899 * 113.61277 * 139.98236 * 7 6 5 10 10 C 1.46904 * 111.00159 * 107.50043 * 9 7 6 11 11 C 1.50695 * 109.47072 * 179.97438 * 10 9 7 12 12 C 1.38631 * 119.75159 * 269.72417 * 11 10 9 13 13 C 1.37627 * 120.25173 * 179.76381 * 12 11 10 14 14 C 1.40718 * 119.74086 * 0.49211 * 13 12 11 15 15 C 1.41388 * 120.24319 * 179.78767 * 14 13 12 16 16 H 1.07998 * 120.00164 * 24.37566 * 15 14 13 17 17 C 1.39953 * 120.00159 * 204.37369 * 15 14 13 18 18 N 1.30823 * 119.99571 * 17.85770 * 17 15 14 19 19 Si 1.86793 * 120.00031 * 197.86459 * 17 15 14 20 20 H 1.48496 * 109.47531 * 89.99687 * 19 17 15 21 21 H 1.48504 * 109.47000 * 210.00099 * 19 17 15 22 22 H 1.48504 * 109.47192 * 329.99454 * 19 17 15 23 23 C 1.40714 * 119.51094 * 359.76332 * 14 13 12 24 24 C 1.37615 * 119.74836 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.46895 * 60.00110 * 1 2 3 26 26 H 1.09005 * 109.46876 * 299.99949 * 1 2 3 27 27 H 1.08998 * 109.47370 * 180.02562 * 1 2 3 28 28 H 1.09002 * 113.61621 * 25.43469 * 5 3 2 29 29 H 1.09001 * 113.61133 * 156.25356 * 5 3 2 30 30 H 1.09001 * 113.61606 * 89.12016 * 6 5 3 31 31 H 1.09006 * 113.61424 * 219.93340 * 6 5 3 32 32 H 1.00893 * 111.00079 * 231.45668 * 9 7 6 33 33 H 1.08996 * 109.47298 * 300.00159 * 10 9 7 34 34 H 1.08994 * 109.47061 * 60.00169 * 10 9 7 35 35 H 1.08003 * 119.87330 * 0.02562 * 12 11 10 36 36 H 1.07996 * 120.12900 * 180.23240 * 13 12 11 37 37 H 0.96997 * 119.99737 * 179.97438 * 18 17 15 38 38 H 1.08008 * 120.12737 * 179.97438 * 23 14 13 39 39 H 1.08001 * 119.88061 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3298 2.0717 0.3713 5 6 2.6906 1.6768 -1.3282 6 6 3.9724 1.0480 -0.7568 7 6 3.4077 1.3575 0.6397 8 1 3.6809 2.3448 1.0122 9 7 3.6461 0.2903 1.6206 10 6 4.6706 0.6897 2.5947 11 6 4.8870 -0.4274 3.5827 12 6 4.1347 -0.4721 4.7462 13 6 4.3204 -1.4903 5.6533 14 6 5.2855 -2.4827 5.4008 15 6 5.4883 -3.5311 6.3276 16 1 4.6946 -3.8167 7.0020 17 6 6.7175 -4.1988 6.3710 18 7 7.7765 -3.6553 5.8282 19 14 6.8459 -5.8659 7.2038 20 1 6.5808 -6.9373 6.2103 21 1 8.2111 -6.0360 7.7629 22 1 5.8480 -5.9496 8.3004 23 6 6.0470 -2.4243 4.2190 24 6 5.8413 -1.3993 3.3241 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.2885 1.1427 -2.1891 29 1 2.7665 2.7514 -1.4944 30 1 4.0655 -0.0182 -0.9637 31 1 4.8773 1.6063 -0.9970 32 1 2.7894 0.0274 2.0841 33 1 5.6046 0.9006 2.0738 34 1 4.3400 1.5833 3.1239 35 1 3.3971 0.2928 4.9396 36 1 3.7306 -1.5252 6.5574 37 1 8.6285 -4.1179 5.8586 38 1 6.7908 -3.1806 4.0154 39 1 6.4248 -1.3522 2.4165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724141755.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:41 Heat of formation + Delta-G solvation = -24.037220 kcal Electronic energy + Delta-G solvation = -18920.237644 eV Core-core repulsion = 16020.259162 eV Total energy + Delta-G solvation = -2899.978482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.59976 -39.44606 -37.11225 -35.94992 -34.53779 -31.63901 -31.07629 -28.19793 -27.68551 -25.67692 -25.44156 -23.86407 -22.82506 -21.65329 -20.38450 -19.20483 -17.67452 -17.36552 -17.09007 -16.29560 -15.84829 -15.72756 -15.56880 -15.46536 -14.90447 -14.51326 -14.25371 -14.17991 -13.79506 -13.33743 -13.24026 -12.86900 -12.78654 -12.73230 -12.52063 -12.27891 -12.21476 -11.83707 -11.63546 -11.36470 -11.23823 -11.11059 -10.98064 -10.37658 -9.32767 -9.29491 -9.06761 -8.62292 -6.31752 0.96858 1.17082 1.37894 1.51371 1.52525 2.21521 2.68314 2.77195 3.51078 3.70150 3.73747 3.86803 4.03095 4.14572 4.34620 4.35151 4.46137 4.54328 4.58528 4.59195 4.62811 4.71918 4.85737 4.88200 4.97723 5.08106 5.11300 5.17562 5.31634 5.40324 5.43981 5.48867 5.73259 5.96757 6.12210 6.20416 6.28557 6.40705 6.47704 6.62791 6.73187 6.96050 7.06599 8.34953 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033486 B = 0.003782 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.966079 B = 7401.261395 C = 7625.691281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.383 6.383 3 C 0.059 3.941 4 H 0.087 0.913 5 C -0.148 4.148 6 C -0.125 4.125 7 C 0.051 3.949 8 H 0.092 0.908 9 N -0.674 5.674 10 C 0.131 3.869 11 C -0.199 4.199 12 C -0.085 4.085 13 C -0.243 4.243 14 C 0.079 3.921 15 C -0.504 4.504 16 H 0.074 0.926 17 C 0.035 3.965 18 N -0.827 5.827 19 Si 0.983 3.017 20 H -0.263 1.263 21 H -0.267 1.267 22 H -0.258 1.258 23 C -0.192 4.192 24 C -0.087 4.087 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.340 0.660 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.287 0.713 38 H 0.097 0.903 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.685 9.580 -10.810 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.301 6.301 3 C 0.000 4.000 4 H 0.105 0.895 5 C -0.186 4.186 6 C -0.164 4.164 7 C -0.059 4.059 8 H 0.109 0.891 9 N -0.306 5.306 10 C 0.003 3.997 11 C -0.201 4.201 12 C -0.104 4.104 13 C -0.263 4.263 14 C 0.077 3.923 15 C -0.534 4.534 16 H 0.092 0.908 17 C -0.180 4.180 18 N -0.453 5.453 19 Si 0.803 3.197 20 H -0.188 1.188 21 H -0.191 1.191 22 H -0.181 1.181 23 C -0.211 4.211 24 C -0.106 4.106 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.160 0.840 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.885 9.062 -11.239 16.952 hybrid contribution -0.253 -0.123 1.061 1.098 sum -9.138 8.938 -10.177 16.339 Atomic orbital electron populations 1.22962 0.79881 1.03461 1.00761 1.87963 1.20853 1.26775 1.94553 1.23474 0.93919 0.85377 0.97215 0.89501 1.23304 0.96278 1.02020 0.97003 1.22930 0.97690 1.00701 0.95043 1.23545 0.95441 0.94096 0.92790 0.89067 1.60494 1.12804 1.39053 1.18258 1.20530 0.95446 0.93035 0.90720 1.19363 1.02230 1.00782 0.97695 1.20682 0.98347 0.97343 0.94010 1.21150 1.05881 0.98219 1.01048 1.17961 0.90960 0.91591 0.91807 1.19846 0.99373 1.16065 1.18112 0.90784 1.26769 0.94215 1.02166 0.94842 1.69888 1.00782 1.37978 1.36642 0.85199 0.78674 0.76829 0.78951 1.18798 1.19114 1.18150 1.21271 1.04036 1.00531 0.95302 1.20724 0.97603 0.94859 0.97409 0.92719 0.93338 0.89305 0.90782 0.87180 0.91648 0.91189 0.84039 0.91757 0.94769 0.86707 0.88602 0.90209 0.88471 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.86 113.37 1.23 1.68 16 2 O -0.38 -9.69 9.83 -148.98 -1.46 -11.16 16 3 C 0.06 1.22 4.15 31.12 0.13 1.35 16 4 H 0.09 1.42 7.89 -2.39 -0.02 1.40 16 5 C -0.15 -2.63 7.91 31.12 0.25 -2.38 16 6 C -0.13 -2.93 7.81 31.12 0.24 -2.69 16 7 C 0.05 1.25 4.09 45.44 0.19 1.44 16 8 H 0.09 1.93 7.87 -2.38 -0.02 1.91 16 9 N -0.67 -21.58 6.27 -492.87 -3.09 -24.67 16 10 C 0.13 4.50 5.65 85.55 0.48 4.98 16 11 C -0.20 -8.70 5.41 -19.68 -0.11 -8.81 16 12 C -0.09 -3.80 9.67 22.22 0.21 -3.58 16 13 C -0.24 -12.40 9.80 22.73 0.22 -12.18 16 14 C 0.08 4.48 5.57 -21.29 -0.12 4.36 16 15 C -0.50 -28.41 9.05 23.46 0.21 -28.19 16 16 H 0.07 4.02 7.91 -2.91 -0.02 4.00 16 17 C 0.03 1.81 5.14 85.26 0.44 2.25 16 18 N -0.83 -44.95 10.95 21.83 0.24 -44.71 16 19 Si 0.98 39.58 29.59 68.60 2.03 41.61 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 23 C -0.19 -10.67 8.70 22.73 0.20 -10.48 16 24 C -0.09 -4.28 9.67 22.22 0.21 -4.07 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.34 11.29 8.10 -89.70 -0.73 10.56 16 33 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 34 H 0.03 1.06 8.07 -2.39 -0.02 1.04 16 35 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.10 4.62 8.06 -2.91 -0.02 4.59 16 37 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 38 H 0.10 5.67 6.15 -2.91 -0.02 5.66 16 39 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -63.08 325.00 1.81 -61.27 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: 0.30 Total: 33.97 kcal Atomic # 6 Polarization: -60.12 SS G_CDS: 3.79 Total: -56.32 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -2.85 Total: -69.38 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -1.46 Total: -11.16 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -63.08 1.81 -61.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724141755.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.236 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds