Wall clock time and date at job start Mon Mar 30 2020 06:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00193 * 2 1 4 4 H 1.09008 * 112.84723 * 21.69694 * 3 2 1 5 5 C 1.53776 * 113.61912 * 250.49715 * 3 2 1 6 6 C 1.53775 * 87.08257 * 220.01811 * 5 3 2 7 7 C 1.53774 * 87.08235 * 25.43304 * 6 5 3 8 8 H 1.09001 * 113.61557 * 89.11753 * 7 6 5 9 9 N 1.46897 * 113.61600 * 220.01721 * 7 6 5 10 10 C 1.46905 * 111.00486 * 255.49289 * 9 7 6 11 11 C 1.50692 * 109.47545 * 179.97438 * 10 9 7 12 12 C 1.38629 * 119.75308 * 269.73016 * 11 10 9 13 13 C 1.37621 * 120.24848 * 179.76100 * 12 11 10 14 14 C 1.40714 * 119.74605 * 0.48970 * 13 12 11 15 15 C 1.41390 * 120.24542 * 179.78807 * 14 13 12 16 16 H 1.08004 * 120.00213 * 330.20938 * 15 14 13 17 17 C 1.39948 * 120.00058 * 150.21427 * 15 14 13 18 18 N 1.30825 * 119.99653 * 161.71978 * 17 15 14 19 19 Si 1.86794 * 119.99970 * 341.71939 * 17 15 14 20 20 H 1.48498 * 109.47451 * 95.41593 * 19 17 15 21 21 H 1.48503 * 109.47370 * 215.41515 * 19 17 15 22 22 H 1.48500 * 109.47066 * 335.41319 * 19 17 15 23 23 C 1.40713 * 119.50922 * 359.76357 * 14 13 12 24 24 C 1.37619 * 119.74801 * 0.02562 * 23 14 13 25 25 H 1.09000 * 109.46889 * 299.99508 * 1 2 3 26 26 H 1.08998 * 109.47133 * 59.99359 * 1 2 3 27 27 H 1.09001 * 109.47099 * 180.02562 * 1 2 3 28 28 H 1.09002 * 113.61147 * 105.46588 * 5 3 2 29 29 H 1.08998 * 113.61337 * 334.57179 * 5 3 2 30 30 H 1.09004 * 113.61292 * 139.97938 * 6 5 3 31 31 H 1.08996 * 113.61499 * 270.88297 * 6 5 3 32 32 H 1.00899 * 111.00064 * 19.45301 * 9 7 6 33 33 H 1.09000 * 109.46991 * 300.00583 * 10 9 7 34 34 H 1.09005 * 109.46446 * 59.99979 * 10 9 7 35 35 H 1.08002 * 119.87707 * 359.97438 * 12 11 10 36 36 H 1.08004 * 120.12509 * 180.23028 * 13 12 11 37 37 H 0.97003 * 119.99585 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.12791 * 180.02562 * 23 14 13 39 39 H 1.08000 * 119.87670 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3297 2.0718 0.3714 5 6 2.6905 1.6769 -1.3281 6 6 3.8009 2.3278 -0.4866 7 6 3.4077 1.3576 0.6397 8 1 3.9404 0.4073 0.6032 9 7 3.4212 1.9696 1.9751 10 6 4.6021 1.5432 2.7378 11 6 4.5818 2.1902 4.0986 12 6 5.1965 3.4186 4.2855 13 6 5.1799 4.0210 5.5228 14 6 4.5446 3.3805 6.6027 15 6 4.5251 3.9877 7.8794 16 1 5.3337 4.6371 8.1810 17 6 3.4580 3.7473 8.7524 18 7 3.5894 3.9962 10.0300 19 14 1.8463 3.0711 8.0934 20 1 1.8297 1.5941 8.2465 21 1 0.7146 3.6602 8.8533 22 1 1.7133 3.4213 6.6564 23 6 3.9285 2.1314 6.4025 24 6 3.9537 1.5496 5.1556 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.1215 2.3889 -1.9259 29 1 3.0270 0.8140 -1.9027 30 1 4.8033 2.1574 -0.8796 31 1 3.6111 3.3742 -0.2476 32 1 3.3751 2.9755 1.9122 33 1 4.5900 0.4591 2.8503 34 1 5.5054 1.8433 2.2066 35 1 5.6874 3.9063 3.4563 36 1 5.6563 4.9798 5.6653 37 1 2.8496 3.8299 10.6350 38 1 3.4377 1.6310 7.2242 39 1 3.4818 0.5907 4.9996 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724141759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:43 Heat of formation + Delta-G solvation = -11.227370 kcal Electronic energy + Delta-G solvation = -18925.911699 eV Core-core repulsion = 16026.488694 eV Total energy + Delta-G solvation = -2899.423005 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.65647 -37.94620 -36.42010 -34.33336 -33.09015 -30.36630 -29.67356 -27.11529 -26.64449 -24.46735 -23.96051 -22.57472 -21.42077 -20.24886 -19.65974 -17.40177 -17.03513 -16.27548 -15.53642 -15.15203 -14.78634 -14.66437 -14.10475 -13.90848 -13.61874 -13.22774 -13.01728 -12.67216 -12.46013 -12.28056 -11.96770 -11.89843 -11.64015 -11.39737 -11.15295 -11.11843 -10.76479 -10.61340 -10.43037 -10.21417 -9.83235 -9.51980 -9.46875 -9.10927 -8.10658 -7.68049 -7.49556 -6.93524 -4.46505 2.57193 2.72404 3.14413 3.24342 3.36117 3.71835 4.01737 4.35525 4.48064 4.53264 4.70861 4.84251 4.93747 5.19865 5.30025 5.39215 5.43641 5.55221 5.57149 5.62883 5.70358 5.73116 5.79762 6.00094 6.05161 6.13278 6.17348 6.24067 6.59168 6.87480 6.92322 7.17048 7.20542 7.32117 7.45669 7.58695 7.67762 7.86170 7.91956 8.15410 8.37814 8.68435 8.82724 10.08940 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026717 B = 0.004433 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.782029 B = 6314.382465 C = 7033.213038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.071 3.929 4 H 0.089 0.911 5 C -0.156 4.156 6 C -0.170 4.170 7 C 0.073 3.927 8 H 0.102 0.898 9 N -0.675 5.675 10 C 0.125 3.875 11 C -0.217 4.217 12 C -0.075 4.075 13 C -0.211 4.211 14 C 0.096 3.904 15 C -0.450 4.450 16 H 0.089 0.911 17 C 0.085 3.915 18 N -0.810 5.810 19 Si 0.912 3.088 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.243 1.243 23 C -0.240 4.240 24 C -0.053 4.053 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.342 0.658 33 H 0.064 0.936 34 H 0.023 0.977 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.285 0.715 38 H 0.099 0.901 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.000 -4.192 -17.791 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C 0.012 3.988 4 H 0.107 0.893 5 C -0.195 4.195 6 C -0.210 4.210 7 C -0.038 4.038 8 H 0.120 0.880 9 N -0.305 5.305 10 C -0.002 4.002 11 C -0.218 4.218 12 C -0.094 4.094 13 C -0.231 4.231 14 C 0.093 3.907 15 C -0.478 4.478 16 H 0.107 0.893 17 C -0.134 4.134 18 N -0.434 5.434 19 Si 0.739 3.261 20 H -0.197 1.197 21 H -0.220 1.220 22 H -0.166 1.166 23 C -0.259 4.259 24 C -0.072 4.072 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.162 0.838 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.352 -4.799 -17.200 18.379 hybrid contribution -0.288 0.491 -0.478 0.744 sum -4.640 -4.307 -17.678 18.777 Atomic orbital electron populations 1.22743 0.81529 1.02404 0.99824 1.87911 1.19401 1.27679 1.94492 1.24048 0.94571 0.85197 0.94951 0.89322 1.23319 0.98147 1.00829 0.97180 1.23434 0.99235 0.99522 0.98760 1.23335 0.95017 0.98141 0.87319 0.88000 1.60449 1.42956 1.13500 1.13627 1.20575 0.89315 0.98822 0.91515 1.18939 1.10468 0.98556 0.93861 1.20483 0.98249 0.94455 0.96218 1.20980 1.09261 1.00166 0.92664 1.17736 0.89829 0.90503 0.92681 1.19512 1.06779 1.25391 0.96145 0.89262 1.26158 1.01285 0.92075 0.93882 1.69704 1.33353 1.36811 1.03558 0.86302 0.79592 0.78965 0.81283 1.19690 1.21968 1.16626 1.21031 1.10465 0.97702 0.96708 1.20438 0.96424 0.97687 0.92617 0.93800 0.94484 0.90022 0.91308 0.89433 0.90854 0.89752 0.83850 0.91719 0.95914 0.89270 0.88351 0.90499 0.88342 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.86 101.05 1.10 1.41 16 2 O -0.38 -4.93 10.71 -35.23 -0.38 -5.31 16 3 C 0.07 0.85 4.09 -25.92 -0.11 0.74 16 4 H 0.09 1.05 7.89 -51.92 -0.41 0.64 16 5 C -0.16 -1.52 7.91 -25.92 -0.21 -1.72 16 6 C -0.17 -1.72 7.71 -25.93 -0.20 -1.92 16 7 C 0.07 0.92 3.98 -66.90 -0.27 0.65 16 8 H 0.10 1.33 7.90 -51.93 -0.41 0.92 16 9 N -0.68 -10.17 6.60 -107.13 -0.71 -10.87 16 10 C 0.13 2.06 5.67 -4.98 -0.03 2.03 16 11 C -0.22 -4.37 5.41 -104.33 -0.56 -4.94 16 12 C -0.08 -1.55 9.67 -39.66 -0.38 -1.93 16 13 C -0.21 -4.91 9.80 -38.87 -0.38 -5.29 16 14 C 0.10 2.45 5.10 -106.83 -0.55 1.90 16 15 C -0.45 -12.32 9.57 -37.74 -0.36 -12.68 16 16 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 17 C 0.08 2.25 5.40 -17.34 -0.09 2.16 16 18 N -0.81 -21.86 13.93 55.55 0.77 -21.09 16 19 Si 0.91 21.29 24.52 -169.99 -4.17 17.12 16 20 H -0.27 -6.17 6.71 56.52 0.38 -5.79 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.24 -5.86 6.86 56.52 0.39 -5.47 16 23 C -0.24 -5.88 7.18 -38.87 -0.28 -6.16 16 24 C -0.05 -1.17 9.67 -39.66 -0.38 -1.55 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.82 7.83 -51.93 -0.41 0.41 16 32 H 0.34 5.00 8.21 -39.29 -0.32 4.68 16 33 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 34 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 37 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 38 H 0.10 2.43 4.73 -52.48 -0.25 2.18 16 39 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -28.09 320.55 -8.38 -36.47 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.03 Total: 6.13 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -2.70 Total: -27.30 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.07 Total: -31.96 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.38 Total: -5.31 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.17 Total: 17.12 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.09 -8.38 -36.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724141759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.247 kcal (2) G-P(sol) polarization free energy of solvation -28.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds