Wall clock time and date at job start Mon Mar 30 2020 06:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00193 * 2 1 4 4 H 1.09008 * 112.84723 * 21.69694 * 3 2 1 5 5 C 1.53776 * 113.61912 * 250.49715 * 3 2 1 6 6 C 1.53775 * 87.08257 * 220.01811 * 5 3 2 7 7 C 1.53774 * 87.08235 * 25.43304 * 6 5 3 8 8 H 1.09001 * 113.61557 * 89.11753 * 7 6 5 9 9 N 1.46897 * 113.61600 * 220.01721 * 7 6 5 10 10 C 1.46905 * 111.00486 * 255.49289 * 9 7 6 11 11 C 1.50692 * 109.47545 * 179.97438 * 10 9 7 12 12 C 1.38629 * 119.75308 * 269.73016 * 11 10 9 13 13 C 1.37621 * 120.24848 * 179.76100 * 12 11 10 14 14 C 1.40714 * 119.74605 * 0.48970 * 13 12 11 15 15 C 1.41390 * 120.24542 * 179.78807 * 14 13 12 16 16 H 1.08004 * 120.00213 * 330.20938 * 15 14 13 17 17 C 1.39948 * 120.00058 * 150.21427 * 15 14 13 18 18 N 1.30825 * 119.99653 * 161.71978 * 17 15 14 19 19 Si 1.86794 * 119.99970 * 341.71939 * 17 15 14 20 20 H 1.48498 * 109.47451 * 95.41593 * 19 17 15 21 21 H 1.48503 * 109.47370 * 215.41515 * 19 17 15 22 22 H 1.48500 * 109.47066 * 335.41319 * 19 17 15 23 23 C 1.40713 * 119.50922 * 359.76357 * 14 13 12 24 24 C 1.37619 * 119.74801 * 0.02562 * 23 14 13 25 25 H 1.09000 * 109.46889 * 299.99508 * 1 2 3 26 26 H 1.08998 * 109.47133 * 59.99359 * 1 2 3 27 27 H 1.09001 * 109.47099 * 180.02562 * 1 2 3 28 28 H 1.09002 * 113.61147 * 105.46588 * 5 3 2 29 29 H 1.08998 * 113.61337 * 334.57179 * 5 3 2 30 30 H 1.09004 * 113.61292 * 139.97938 * 6 5 3 31 31 H 1.08996 * 113.61499 * 270.88297 * 6 5 3 32 32 H 1.00899 * 111.00064 * 19.45301 * 9 7 6 33 33 H 1.09000 * 109.46991 * 300.00583 * 10 9 7 34 34 H 1.09005 * 109.46446 * 59.99979 * 10 9 7 35 35 H 1.08002 * 119.87707 * 359.97438 * 12 11 10 36 36 H 1.08004 * 120.12509 * 180.23028 * 13 12 11 37 37 H 0.97003 * 119.99585 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.12791 * 180.02562 * 23 14 13 39 39 H 1.08000 * 119.87670 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3297 2.0718 0.3714 5 6 2.6905 1.6769 -1.3281 6 6 3.8009 2.3278 -0.4866 7 6 3.4077 1.3576 0.6397 8 1 3.9404 0.4073 0.6032 9 7 3.4212 1.9696 1.9751 10 6 4.6021 1.5432 2.7378 11 6 4.5818 2.1902 4.0986 12 6 5.1965 3.4186 4.2855 13 6 5.1799 4.0210 5.5228 14 6 4.5446 3.3805 6.6027 15 6 4.5251 3.9877 7.8794 16 1 5.3337 4.6371 8.1810 17 6 3.4580 3.7473 8.7524 18 7 3.5894 3.9962 10.0300 19 14 1.8463 3.0711 8.0934 20 1 1.8297 1.5941 8.2465 21 1 0.7146 3.6602 8.8533 22 1 1.7133 3.4213 6.6564 23 6 3.9285 2.1314 6.4025 24 6 3.9537 1.5496 5.1556 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.1215 2.3889 -1.9259 29 1 3.0270 0.8140 -1.9027 30 1 4.8033 2.1574 -0.8796 31 1 3.6111 3.3742 -0.2476 32 1 3.3751 2.9755 1.9122 33 1 4.5900 0.4591 2.8503 34 1 5.5054 1.8433 2.2066 35 1 5.6874 3.9063 3.4563 36 1 5.6563 4.9798 5.6653 37 1 2.8496 3.8299 10.6350 38 1 3.4377 1.6310 7.2242 39 1 3.4818 0.5907 4.9996 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724141759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:43 Heat of formation + Delta-G solvation = -29.138329 kcal Electronic energy + Delta-G solvation = -18926.688376 eV Core-core repulsion = 16026.488694 eV Total energy + Delta-G solvation = -2900.199682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.58534 -39.66345 -37.41298 -35.91748 -34.67531 -32.03853 -31.47548 -28.22586 -27.89372 -25.32678 -25.28306 -23.91354 -23.18635 -21.83075 -20.70888 -19.34730 -17.93601 -17.56320 -17.13821 -16.08706 -16.02390 -15.76678 -15.68624 -15.60456 -15.18792 -14.64257 -14.09116 -14.07801 -13.83568 -13.80512 -13.44750 -13.00801 -12.81415 -12.66203 -12.61816 -12.51524 -12.12798 -11.98060 -11.94166 -11.63714 -11.39147 -11.24354 -10.98772 -10.39648 -9.48297 -9.41051 -9.14744 -8.90541 -6.49018 0.76507 0.89795 1.25797 1.38887 1.48175 2.12060 2.55176 2.88540 3.40658 3.58914 3.70128 3.79475 3.96554 4.01534 4.20952 4.30604 4.41896 4.45495 4.56876 4.59500 4.62183 4.69643 4.74308 4.83807 4.85152 4.90650 5.02258 5.07275 5.10082 5.17352 5.29437 5.34490 5.63246 5.77080 5.92393 6.07756 6.18103 6.27408 6.37801 6.43561 6.55670 6.75706 6.85807 8.18354 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026717 B = 0.004433 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.782029 B = 6314.382465 C = 7033.213038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.064 3.936 4 H 0.087 0.913 5 C -0.145 4.145 6 C -0.159 4.159 7 C 0.066 3.934 8 H 0.096 0.904 9 N -0.687 5.687 10 C 0.131 3.869 11 C -0.192 4.192 12 C -0.071 4.071 13 C -0.222 4.222 14 C 0.073 3.927 15 C -0.489 4.489 16 H 0.056 0.944 17 C 0.050 3.950 18 N -0.852 5.852 19 Si 0.965 3.035 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.255 1.255 23 C -0.251 4.251 24 C -0.065 4.065 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.345 0.655 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.128 0.872 36 H 0.101 0.899 37 H 0.293 0.707 38 H 0.091 0.909 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.614 -5.071 -21.312 22.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C 0.006 3.994 4 H 0.105 0.895 5 C -0.183 4.183 6 C -0.198 4.198 7 C -0.045 4.045 8 H 0.114 0.886 9 N -0.317 5.317 10 C 0.003 3.997 11 C -0.193 4.193 12 C -0.089 4.089 13 C -0.241 4.241 14 C 0.070 3.930 15 C -0.519 4.519 16 H 0.074 0.926 17 C -0.164 4.164 18 N -0.479 5.479 19 Si 0.789 3.211 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.179 1.179 23 C -0.271 4.271 24 C -0.083 4.083 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.165 0.835 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.146 0.854 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.965 -5.679 -20.731 22.061 hybrid contribution -0.015 0.691 0.354 0.776 sum -4.980 -4.988 -20.377 21.562 Atomic orbital electron populations 1.22885 0.80237 1.03431 1.00344 1.87872 1.20940 1.28450 1.94702 1.24157 0.94193 0.84852 0.96240 0.89529 1.23247 0.97648 1.01110 0.96332 1.23376 0.99925 0.99222 0.97283 1.23437 0.95935 0.98449 0.86640 0.88567 1.60349 1.42176 1.13888 1.15316 1.20506 0.90949 0.98676 0.89578 1.19471 1.06867 0.97637 0.95314 1.20847 0.97531 0.94454 0.96097 1.21210 1.08951 1.00612 0.93346 1.17878 0.91179 0.91238 0.92684 1.19501 1.07220 1.27102 0.98091 0.92578 1.26760 1.03429 0.92327 0.93916 1.69729 1.34608 1.39153 1.04390 0.85490 0.76804 0.78858 0.79922 1.18808 1.20344 1.17899 1.21113 1.10702 0.97489 0.97751 1.20749 0.96782 0.98634 0.92171 0.94338 0.92875 0.88863 0.89781 0.89234 0.89849 0.89075 0.83529 0.91396 0.93848 0.85438 0.88035 0.89675 0.89071 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.86 113.37 1.23 1.72 16 2 O -0.40 -9.58 10.71 -148.98 -1.60 -11.18 16 3 C 0.06 1.35 4.09 31.12 0.13 1.47 16 4 H 0.09 1.82 7.89 -2.38 -0.02 1.80 16 5 C -0.15 -2.30 7.91 31.12 0.25 -2.06 16 6 C -0.16 -2.58 7.71 31.12 0.24 -2.34 16 7 C 0.07 1.44 3.98 45.44 0.18 1.62 16 8 H 0.10 2.23 7.90 -2.39 -0.02 2.21 16 9 N -0.69 -18.26 6.60 -492.86 -3.25 -21.51 16 10 C 0.13 3.77 5.67 85.55 0.48 4.26 16 11 C -0.19 -7.12 5.41 -19.68 -0.11 -7.22 16 12 C -0.07 -2.70 9.67 22.22 0.21 -2.49 16 13 C -0.22 -10.20 9.80 22.73 0.22 -9.97 16 14 C 0.07 3.79 5.10 -21.29 -0.11 3.68 16 15 C -0.49 -28.19 9.57 23.46 0.22 -27.96 16 16 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 17 C 0.05 2.75 5.40 85.26 0.46 3.21 16 18 N -0.85 -47.95 13.93 21.83 0.30 -47.65 16 19 Si 0.97 44.61 24.52 68.60 1.68 46.29 16 20 H -0.26 -11.62 6.71 99.48 0.67 -10.95 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.26 -12.12 6.86 99.48 0.68 -11.44 16 23 C -0.25 -12.25 7.18 22.73 0.16 -12.09 16 24 C -0.06 -2.72 9.67 22.22 0.21 -2.51 16 25 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.39 7.83 -2.39 -0.02 1.37 16 32 H 0.35 8.79 8.21 -89.69 -0.74 8.05 16 33 H 0.07 1.96 8.07 -2.39 -0.02 1.94 16 34 H 0.04 1.11 8.08 -2.38 -0.02 1.09 16 35 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 36 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.29 14.81 8.30 -92.71 -0.77 14.04 16 38 H 0.09 4.51 4.73 -2.91 -0.01 4.50 16 39 H 0.11 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -61.97 320.55 1.17 -60.80 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.23 Total: 23.93 kcal Atomic # 6 Polarization: -54.48 SS G_CDS: 3.80 Total: -50.68 kcal Atomic # 7 Polarization: -66.21 SS G_CDS: -2.95 Total: -69.16 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -1.60 Total: -11.18 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.68 Total: 46.29 kcal Total: -61.97 1.17 -60.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724141759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.663 kcal (2) G-P(sol) polarization free energy of solvation -61.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds