Wall clock time and date at job start Mon Mar 30 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29755 * 119.99959 * 2 1 4 4 N 1.40099 * 119.99813 * 359.97438 * 3 2 1 5 5 C 1.46503 * 120.00348 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46548 * 330.00375 * 5 4 3 7 7 C 1.52997 * 109.46936 * 89.99619 * 5 4 3 8 8 C 1.50701 * 109.47218 * 210.00216 * 5 4 3 9 9 H 1.07995 * 120.00268 * 359.97438 * 8 5 4 10 10 C 1.37880 * 119.99660 * 180.02562 * 8 5 4 11 11 N 1.31513 * 119.99851 * 359.97438 * 10 8 5 12 12 Si 1.86793 * 119.99811 * 179.97438 * 10 8 5 13 13 H 1.48497 * 109.47421 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47230 * 119.99700 * 12 10 8 15 15 H 1.48499 * 109.47088 * 239.99626 * 12 10 8 16 16 C 1.47463 * 120.00236 * 179.97438 * 2 1 3 17 17 C 1.39746 * 120.07846 * 114.47082 * 16 2 1 18 18 C 1.37769 * 119.91430 * 179.76840 * 17 16 2 19 19 C 1.39074 * 120.08094 * 0.48481 * 18 17 16 20 20 N 1.39584 * 119.91554 * 179.76762 * 19 18 17 21 21 C 1.39031 * 120.16207 * 359.78749 * 19 18 17 22 22 C 1.37797 * 120.08256 * 359.95721 * 21 19 18 23 23 C 1.50696 * 120.04191 * 179.97438 * 22 21 19 24 24 H 1.08997 * 109.47063 * 269.99683 * 1 2 3 25 25 H 1.09000 * 109.47136 * 30.00115 * 1 2 3 26 26 H 1.09007 * 109.46786 * 149.99883 * 1 2 3 27 27 H 0.97002 * 120.00010 * 359.97438 * 4 3 2 28 28 H 1.09000 * 109.47450 * 300.00702 * 7 5 4 29 29 H 1.09011 * 109.47026 * 60.00640 * 7 5 4 30 30 H 1.09002 * 109.47210 * 179.97438 * 7 5 4 31 31 H 0.97001 * 119.99942 * 180.02562 * 11 10 8 32 32 H 1.07999 * 120.04737 * 359.97438 * 17 16 2 33 33 H 1.08003 * 119.95568 * 180.25399 * 18 17 16 34 34 H 0.97005 * 119.99630 * 180.02562 * 20 19 18 35 35 H 0.97003 * 120.00675 * 0.02562 * 20 19 18 36 36 H 1.08004 * 119.95757 * 179.97438 * 21 19 18 37 37 H 1.09001 * 109.47050 * 264.69187 * 23 22 21 38 38 H 1.08993 * 109.47361 * 24.69312 * 23 22 21 39 39 H 1.09001 * 109.47171 * 144.69416 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1237 0.0000 4 7 1.4552 2.3370 -0.0005 5 6 2.1876 3.6058 0.0000 6 1 3.1396 3.4755 0.5145 7 6 2.4437 4.0474 -1.4423 8 6 1.3725 4.6560 0.7098 9 1 0.4056 4.4037 1.1192 10 6 1.8610 5.9392 0.8357 11 7 3.0384 6.2465 0.3367 12 14 0.8505 7.2411 1.7149 13 1 -0.4276 6.6452 2.1802 14 1 1.6119 7.7542 2.8821 15 1 0.5635 8.3594 0.7808 16 6 2.2444 -1.2770 0.0006 17 6 3.0284 -1.6336 -1.0999 18 6 3.7197 -2.8253 -1.0938 19 6 3.6299 -3.6776 0.0015 20 7 4.3279 -4.8864 0.0020 21 6 2.8464 -3.3288 1.0957 22 6 2.1563 -2.1360 1.0989 23 6 1.3068 -1.7591 2.2852 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 0.4852 2.3369 -0.0013 28 1 3.0332 3.2878 -1.9557 29 1 1.4916 4.1777 -1.9569 30 1 2.9883 4.9917 -1.4419 31 1 3.3822 7.1492 0.4256 32 1 3.0950 -0.9743 -1.9528 33 1 4.3291 -3.0996 -1.9422 34 1 4.2659 -5.4819 0.7652 35 1 4.8750 -5.1309 -0.7608 36 1 2.7787 -3.9933 1.9444 37 1 0.2733 -2.0514 2.0995 38 1 1.6753 -2.2718 3.1736 39 1 1.3573 -0.6814 2.4405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758120019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:07 Heat of formation + Delta-G solvation = 53.979401 kcal Electronic energy + Delta-G solvation = -18912.368369 eV Core-core repulsion = 16048.065693 eV Total energy + Delta-G solvation = -2864.302676 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.39860 -36.86582 -35.02238 -33.77006 -32.14835 -31.50013 -29.17448 -27.84388 -27.11322 -26.04712 -25.11370 -22.45630 -21.36477 -20.26413 -18.87322 -17.01836 -16.87224 -16.42062 -15.54956 -14.99216 -14.62278 -14.47563 -13.82663 -13.60480 -13.26521 -13.08284 -12.89325 -12.60463 -12.43316 -12.32766 -11.87573 -11.76027 -11.30833 -11.11439 -10.97933 -10.84509 -10.71205 -10.34043 -10.26724 -10.16774 -9.94752 -9.28795 -8.90752 -8.55483 -8.46887 -7.40665 -6.68982 -6.09036 -4.16714 1.62240 1.69908 3.01472 3.25805 3.33370 3.36852 3.83676 3.90572 4.18974 4.43778 5.01206 5.10648 5.18979 5.23530 5.42354 5.60870 5.68692 5.71364 5.80138 5.91652 5.96159 6.03896 6.08763 6.33046 6.36059 6.47645 6.72457 6.87404 6.94926 7.03269 7.07720 7.17748 7.24456 7.53574 7.64398 7.71183 7.86362 7.94372 8.24400 8.41378 8.93042 9.49261 9.52676 10.96931 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033777 B = 0.003917 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.755517 B = 7145.963188 C = 7474.030449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.023 3.977 3 N -0.197 5.197 4 N -0.633 5.633 5 C 0.298 3.702 6 H 0.040 0.960 7 C -0.150 4.150 8 C -0.527 4.527 9 H 0.059 0.941 10 C 0.065 3.935 11 N -0.886 5.886 12 Si 0.901 3.099 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.283 1.283 16 C -0.056 4.056 17 C -0.046 4.046 18 C -0.204 4.204 19 C 0.211 3.789 20 N -0.883 5.883 21 C -0.200 4.200 22 C -0.022 4.022 23 C -0.114 4.114 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.368 0.632 28 H 0.012 0.988 29 H 0.024 0.976 30 H 0.088 0.912 31 H 0.263 0.737 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.394 0.606 35 H 0.395 0.605 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.237 -19.351 -0.453 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 N -0.009 5.009 4 N -0.370 5.370 5 C 0.196 3.804 6 H 0.058 0.942 7 C -0.209 4.209 8 C -0.567 4.567 9 H 0.077 0.923 10 C -0.137 4.137 11 N -0.524 5.524 12 Si 0.729 3.271 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.060 4.060 17 C -0.066 4.066 18 C -0.227 4.227 19 C 0.107 3.893 20 N -0.422 5.422 21 C -0.223 4.223 22 C -0.024 4.024 23 C -0.171 4.171 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.205 0.795 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.222 0.778 35 H 0.223 0.777 36 H 0.134 0.866 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.109 -18.515 -0.468 18.521 hybrid contribution -1.427 0.243 0.355 1.490 sum -1.536 -18.272 -0.113 18.337 Atomic orbital electron populations 1.20993 0.93659 1.02146 1.01920 1.22173 0.92356 0.90902 1.11367 1.74246 1.28166 0.92912 1.05540 1.48980 1.05998 1.00352 1.81700 1.18464 0.92697 0.76549 0.92737 0.94235 1.22202 0.99069 1.01678 0.97951 1.21293 1.04443 0.94409 1.36512 0.92253 1.24862 0.95128 0.98240 0.95485 1.69907 1.17431 1.20154 1.44939 0.86395 0.80112 0.81284 0.79318 1.19793 1.20869 1.20899 1.17826 1.00681 0.92985 0.94523 1.21032 0.93543 0.94693 0.97326 1.20428 1.06855 0.96644 0.98749 1.17773 0.91347 0.86310 0.93853 1.42408 1.55432 1.20708 1.23671 1.20254 1.04196 0.99010 0.98836 1.19679 0.95555 0.92702 0.94478 1.20821 0.98662 1.02645 0.94936 0.91704 0.92184 0.91736 0.79503 0.96928 0.95685 0.89313 0.92703 0.86070 0.86583 0.77799 0.77731 0.86576 0.91204 0.92087 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.95 36.01 0.32 -1.59 16 2 C 0.02 0.41 5.33 -79.71 -0.42 -0.01 16 3 N -0.20 -4.23 11.48 35.11 0.40 -3.83 16 4 N -0.63 -14.50 5.95 -5.88 -0.04 -14.54 16 5 C 0.30 7.83 3.23 -69.08 -0.22 7.61 16 6 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 7 C -0.15 -3.79 9.29 37.16 0.35 -3.45 16 8 C -0.53 -14.47 8.74 -34.44 -0.30 -14.77 16 9 H 0.06 1.60 7.79 -52.49 -0.41 1.19 16 10 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 11 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 12 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 C -0.06 -0.89 5.53 -105.02 -0.58 -1.47 16 17 C -0.05 -0.68 9.78 -39.19 -0.38 -1.07 16 18 C -0.20 -2.60 9.87 -39.44 -0.39 -2.98 16 19 C 0.21 2.48 6.76 -83.72 -0.57 1.91 16 20 N -0.88 -7.16 9.08 32.45 0.29 -6.86 16 21 C -0.20 -2.46 9.50 -39.45 -0.37 -2.84 16 22 C -0.02 -0.31 5.91 -104.23 -0.62 -0.92 16 23 C -0.11 -1.41 8.62 36.00 0.31 -1.10 16 24 H 0.06 0.90 7.47 -51.93 -0.39 0.51 16 25 H 0.06 0.94 6.35 -51.93 -0.33 0.61 16 26 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 27 H 0.37 7.86 6.36 -182.60 -1.16 6.70 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.02 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.39 2.46 8.84 -40.82 -0.36 2.10 16 35 H 0.40 2.51 8.84 -40.82 -0.36 2.15 16 36 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.64 8.05 -51.93 -0.42 0.23 16 39 H 0.07 1.05 7.09 -51.93 -0.37 0.68 16 LS Contribution 325.52 15.07 4.91 4.91 Total: -1.00 -30.14 325.52 -8.43 -38.57 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.63 Total: 9.21 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.98 Total: -18.98 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 1.29 Total: -49.75 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.14 -8.43 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758120019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.547 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds