Wall clock time and date at job start Mon Mar 30 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29755 * 119.99959 * 2 1 4 4 N 1.40099 * 119.99813 * 359.97438 * 3 2 1 5 5 C 1.46503 * 120.00348 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46548 * 330.00375 * 5 4 3 7 7 C 1.52997 * 109.46936 * 89.99619 * 5 4 3 8 8 C 1.50701 * 109.47218 * 210.00216 * 5 4 3 9 9 H 1.07995 * 120.00268 * 359.97438 * 8 5 4 10 10 C 1.37880 * 119.99660 * 180.02562 * 8 5 4 11 11 N 1.31513 * 119.99851 * 359.97438 * 10 8 5 12 12 Si 1.86793 * 119.99811 * 179.97438 * 10 8 5 13 13 H 1.48497 * 109.47421 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47230 * 119.99700 * 12 10 8 15 15 H 1.48499 * 109.47088 * 239.99626 * 12 10 8 16 16 C 1.47463 * 120.00236 * 179.97438 * 2 1 3 17 17 C 1.39746 * 120.07846 * 114.47082 * 16 2 1 18 18 C 1.37769 * 119.91430 * 179.76840 * 17 16 2 19 19 C 1.39074 * 120.08094 * 0.48481 * 18 17 16 20 20 N 1.39584 * 119.91554 * 179.76762 * 19 18 17 21 21 C 1.39031 * 120.16207 * 359.78749 * 19 18 17 22 22 C 1.37797 * 120.08256 * 359.95721 * 21 19 18 23 23 C 1.50696 * 120.04191 * 179.97438 * 22 21 19 24 24 H 1.08997 * 109.47063 * 269.99683 * 1 2 3 25 25 H 1.09000 * 109.47136 * 30.00115 * 1 2 3 26 26 H 1.09007 * 109.46786 * 149.99883 * 1 2 3 27 27 H 0.97002 * 120.00010 * 359.97438 * 4 3 2 28 28 H 1.09000 * 109.47450 * 300.00702 * 7 5 4 29 29 H 1.09011 * 109.47026 * 60.00640 * 7 5 4 30 30 H 1.09002 * 109.47210 * 179.97438 * 7 5 4 31 31 H 0.97001 * 119.99942 * 180.02562 * 11 10 8 32 32 H 1.07999 * 120.04737 * 359.97438 * 17 16 2 33 33 H 1.08003 * 119.95568 * 180.25399 * 18 17 16 34 34 H 0.97005 * 119.99630 * 180.02562 * 20 19 18 35 35 H 0.97003 * 120.00675 * 0.02562 * 20 19 18 36 36 H 1.08004 * 119.95757 * 179.97438 * 21 19 18 37 37 H 1.09001 * 109.47050 * 264.69187 * 23 22 21 38 38 H 1.08993 * 109.47361 * 24.69312 * 23 22 21 39 39 H 1.09001 * 109.47171 * 144.69416 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1237 0.0000 4 7 1.4552 2.3370 -0.0005 5 6 2.1876 3.6058 0.0000 6 1 3.1396 3.4755 0.5145 7 6 2.4437 4.0474 -1.4423 8 6 1.3725 4.6560 0.7098 9 1 0.4056 4.4037 1.1192 10 6 1.8610 5.9392 0.8357 11 7 3.0384 6.2465 0.3367 12 14 0.8505 7.2411 1.7149 13 1 -0.4276 6.6452 2.1802 14 1 1.6119 7.7542 2.8821 15 1 0.5635 8.3594 0.7808 16 6 2.2444 -1.2770 0.0006 17 6 3.0284 -1.6336 -1.0999 18 6 3.7197 -2.8253 -1.0938 19 6 3.6299 -3.6776 0.0015 20 7 4.3279 -4.8864 0.0020 21 6 2.8464 -3.3288 1.0957 22 6 2.1563 -2.1360 1.0989 23 6 1.3068 -1.7591 2.2852 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 0.4852 2.3369 -0.0013 28 1 3.0332 3.2878 -1.9557 29 1 1.4916 4.1777 -1.9569 30 1 2.9883 4.9917 -1.4419 31 1 3.3822 7.1492 0.4256 32 1 3.0950 -0.9743 -1.9528 33 1 4.3291 -3.0996 -1.9422 34 1 4.2659 -5.4819 0.7652 35 1 4.8750 -5.1309 -0.7608 36 1 2.7787 -3.9933 1.9444 37 1 0.2733 -2.0514 2.0995 38 1 1.6753 -2.2718 3.1736 39 1 1.3573 -0.6814 2.4405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758120019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:07 Heat of formation + Delta-G solvation = 34.774236 kcal Electronic energy + Delta-G solvation = -18913.201168 eV Core-core repulsion = 16048.065693 eV Total energy + Delta-G solvation = -2865.135474 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45327 -38.35760 -36.49173 -35.24602 -33.31545 -33.14229 -30.68010 -28.96845 -28.39236 -27.51271 -27.13943 -23.60083 -22.63697 -21.92023 -20.33402 -18.72452 -17.72203 -17.51250 -17.15430 -16.80917 -16.00756 -15.53057 -15.35311 -14.72941 -14.53548 -14.44416 -14.40389 -13.93228 -13.76480 -13.46260 -13.31388 -13.17599 -12.93268 -12.85982 -12.65309 -12.32366 -12.23247 -12.07080 -11.94904 -11.66125 -11.33230 -11.02223 -10.63842 -10.55639 -9.57306 -8.61866 -8.18276 -8.10697 -6.33472 0.57429 0.62332 1.42437 1.42830 1.55132 1.60144 2.29972 2.54593 3.03147 3.10218 3.12288 3.91815 4.03156 4.11364 4.39804 4.45124 4.58762 4.64558 4.71503 4.76789 4.83562 4.88179 4.98038 5.00438 5.08142 5.14782 5.21617 5.31196 5.36338 5.48093 5.56513 5.73591 5.83258 5.87812 5.95989 6.03561 6.24834 6.48373 6.68628 6.89788 7.10069 7.38588 7.93726 8.89001 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033777 B = 0.003917 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.755517 B = 7145.963188 C = 7474.030449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.066 3.934 3 N -0.255 5.255 4 N -0.648 5.648 5 C 0.309 3.691 6 H -0.005 1.005 7 C -0.135 4.135 8 C -0.545 4.545 9 H 0.060 0.940 10 C 0.017 3.983 11 N -0.916 5.916 12 Si 0.972 3.028 13 H -0.266 1.266 14 H -0.279 1.279 15 H -0.276 1.276 16 C -0.099 4.099 17 C -0.058 4.058 18 C -0.211 4.211 19 C 0.221 3.779 20 N -0.865 5.865 21 C -0.204 4.204 22 C -0.025 4.025 23 C -0.113 4.113 24 H 0.080 0.920 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.371 0.629 28 H 0.015 0.985 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.266 0.734 32 H 0.110 0.890 33 H 0.136 0.864 34 H 0.407 0.593 35 H 0.406 0.594 36 H 0.143 0.857 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 -21.765 0.320 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.127 4.127 3 N -0.064 5.064 4 N -0.386 5.386 5 C 0.204 3.796 6 H 0.013 0.987 7 C -0.194 4.194 8 C -0.584 4.584 9 H 0.078 0.922 10 C -0.183 4.183 11 N -0.554 5.554 12 Si 0.796 3.204 13 H -0.190 1.190 14 H -0.205 1.205 15 H -0.201 1.201 16 C -0.103 4.103 17 C -0.078 4.078 18 C -0.234 4.234 19 C 0.114 3.886 20 N -0.405 5.405 21 C -0.227 4.227 22 C -0.027 4.027 23 C -0.169 4.169 24 H 0.098 0.902 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.210 0.790 28 H 0.034 0.966 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.128 0.872 33 H 0.154 0.846 34 H 0.237 0.763 35 H 0.236 0.764 36 H 0.161 0.839 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.902 -20.983 0.300 21.005 hybrid contribution -1.104 0.650 0.108 1.286 sum -2.005 -20.333 0.408 20.435 Atomic orbital electron populations 1.21091 0.91809 1.02936 1.03100 1.22887 0.94048 0.90674 1.05058 1.74296 1.28952 0.93242 1.09929 1.48443 1.05667 1.00125 1.84374 1.18042 0.91021 0.78220 0.92270 0.98684 1.22015 0.98905 1.00569 0.97928 1.21559 1.04640 0.95194 1.37030 0.92176 1.25738 0.96178 1.00318 0.96059 1.70036 1.18868 1.20775 1.45750 0.85308 0.78633 0.78357 0.78088 1.19032 1.20515 1.20141 1.17941 1.03031 0.92889 0.96426 1.21030 0.94114 0.95700 0.96977 1.20609 1.06770 0.96053 0.99967 1.17887 0.90597 0.86979 0.93098 1.42398 1.54167 1.19369 1.24598 1.20526 1.03575 0.98734 0.99839 1.19848 0.95796 0.92932 0.94119 1.20840 0.99709 1.01080 0.95281 0.90196 0.92936 0.89256 0.79008 0.96628 0.95194 0.91348 0.92453 0.87235 0.84602 0.76288 0.76419 0.83881 0.89406 0.90004 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 8.95 71.24 0.64 -3.16 16 2 C 0.07 2.36 5.33 45.30 0.24 2.60 16 3 N -0.26 -11.42 11.48 -42.84 -0.49 -11.91 16 4 N -0.65 -31.00 5.95 -172.52 -1.03 -32.03 16 5 C 0.31 17.02 3.23 44.24 0.14 17.17 16 6 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 7 C -0.13 -7.13 9.29 71.98 0.67 -6.46 16 8 C -0.55 -30.76 8.74 25.60 0.22 -30.54 16 9 H 0.06 3.29 7.79 -2.91 -0.02 3.27 16 10 C 0.02 0.95 5.30 84.66 0.45 1.40 16 11 N -0.92 -53.34 11.32 21.45 0.24 -53.10 16 12 Si 0.97 43.53 29.54 68.60 2.03 45.55 16 13 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 16 C -0.10 -3.09 5.53 -20.12 -0.11 -3.20 16 17 C -0.06 -1.71 9.78 22.52 0.22 -1.49 16 18 C -0.21 -4.99 9.87 22.36 0.22 -4.76 16 19 C 0.22 4.52 6.76 38.30 0.26 4.78 16 20 N -0.87 -10.71 9.08 -51.25 -0.47 -11.17 16 21 C -0.20 -4.38 9.50 22.36 0.21 -4.17 16 22 C -0.02 -0.65 5.91 -19.61 -0.12 -0.76 16 23 C -0.11 -2.56 8.62 71.23 0.61 -1.95 16 24 H 0.08 2.13 7.47 -2.39 -0.02 2.12 16 25 H 0.05 1.63 6.35 -2.39 -0.02 1.62 16 26 H 0.09 2.16 8.11 -2.38 -0.02 2.14 16 27 H 0.37 16.45 6.36 -213.32 -1.36 15.10 16 28 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 31 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.11 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.41 3.35 8.84 -92.70 -0.82 2.53 16 35 H 0.41 3.63 8.84 -92.71 -0.82 2.81 16 36 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.50 8.05 -2.39 -0.02 1.48 16 39 H 0.05 1.29 7.09 -2.39 -0.02 1.28 16 Total: -1.00 -67.29 325.52 2.03 -65.26 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -1.92 Total: 27.97 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 3.66 Total: -30.56 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -1.74 Total: -108.21 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -67.29 2.03 -65.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758120019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.030 kcal (2) G-P(sol) polarization free energy of solvation -67.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds